Cla97C01G003050 (gene) Watermelon (97103) v2

Overview
NameCla97C01G003050
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr01 : 2848534 .. 2848770 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCAAAACCCCATTCCCCCTTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTCACCACCACCCCTCTCTCCGCCGCCCGCCGCCTCTCCTCCTCCCCACAACAACTGGAAAATGATTCTCCCCACCCACCCACCACCCCAACATTTTCATTGGCACAGCAGCCGGCCGCCGTGAACTACGCCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

mRNA sequence

ATGGCTTCTCAAAACCCCATTCCCCCTTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTCACCACCACCCCTCTCTCCGCCGCCCGCCGCCTCTCCTCCTCCCCACAACAACTGGAAAATGATTCTCCCCACCCACCCACCACCCCAACATTTTCATTGGCACAGCAGCCGGCCGCCGTGAACTACGCCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

Coding sequence (CDS)

ATGGCTTCTCAAAACCCCATTCCCCCTTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTCACCACCACCCCTCTCTCCGCCGCCCGCCGCCTCTCCTCCTCCCCACAACAACTGGAAAATGATTCTCCCCACCCACCCACCACCCCAACATTTTCATTGGCACAGCAGCCGGCCGCCGTGAACTACGCCGTTTCACTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

Protein sequence

MASQNPIPPSLFLFLFIILLTTTPLSAARRLSSSPQQLENDSPHPPTTPTFSLAQQPAAVNYAVSLRKVPAGPNPLHN
Homology
[Close]
BLAST of Cla97C01G003050 vs. NCBI nr
Match: KGN50125.1 (hypothetical protein Csa_5G154870 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 59/89 (66.29%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 1  MASQNPIPP-SLF-LXXXXXXXXXXXXXXXXXXXXXXXQLEND--SPHPPTTPTFSLAQQ 60
          MASQN IPP SLF  XXXXXXXXXXXXX          Q END  S HPPTT TFS  Q 
Sbjct: 1  MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PAAV-------NYAVSLRKVPAGPNPLHN 79
          PAAV       NY VSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

[Close]
BLAST of Cla97C01G003050 vs. TrEMBL
Match: tr|A0A0A0KKA9|A0A0A0KKA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-08
Identity = 59/89 (66.29%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 1  MASQNPIPP-SLF-LXXXXXXXXXXXXXXXXXXXXXXXQLEND--SPHPPTTPTFSLAQQ 60
          MASQN IPP SLF  XXXXXXXXXXXXX          Q END  S HPPTT TFS  Q 
Sbjct: 1  MASQNSIPPNSLFXXXXXXXXXXXXXXXAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PAAV-------NYAVSLRKVPAGPNPLHN 79
          PAAV       NY VSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

The following BLAST results are available for this feature:
BLAST of Cla97C01G003050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50125.11.2e-0766.29hypothetical protein Csa_5G154870 [Cucumis sativus][more]
BLAST of Cla97C01G003050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKA9|A0A0A0KKA9_CUCSA8.1e-0866.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1[more]
BLAST of Cla97C01G003050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G003050 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
biological_process GO:0030154 cell differentiation
biological_process GO:0007275 multicellular organism development
cellular_component GO:0005575 cellular_component
cellular_component GO:0048046 apoplast
cellular_component GO:0005576 extracellular region
cellular_component GO:0005615 extracellular space
molecular_function GO:0003674 molecular_function
molecular_function GO:0033612 receptor serine/threonine kinase binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G003050.1Cla97C01G003050.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..52

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G003050Cla011472Watermelon (97103) v1wmwmbB235
Cla97C01G003050MELO3C005649Melon (DHL92) v3.5.1mewmbB008
Cla97C01G003050ClCG01G002960Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G003050CmaCh02G014740Cucurbita maxima (Rimu)cmawmbB600
Cla97C01G003050CmaCh15G012120Cucurbita maxima (Rimu)cmawmbB288
Cla97C01G003050CmoCh15G012760Cucurbita moschata (Rifu)cmowmbB270
Cla97C01G003050Lsi09G002870Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G003050MELO3C005649.2Melon (DHL92) v3.6.1medwmbB006
Cla97C01G003050Bhi12G000220Wax gourdwgowmbB061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G003050Wax gourdwgowmbB165
Cla97C01G003050Watermelon (97103) v2wmbwmbB023
Cla97C01G003050Silver-seed gourdcarwmbB0963
Cla97C01G003050Silver-seed gourdcarwmbB0980
Cla97C01G003050Cucumber (Gy14) v2cgybwmbB172
Cla97C01G003050Cucumber (Gy14) v2cgybwmbB319
Cla97C01G003050Cucumber (Gy14) v1cgywmbB520
Cla97C01G003050Cucurbita maxima (Rimu)cmawmbB330
Cla97C01G003050Cucurbita maxima (Rimu)cmawmbB403
Cla97C01G003050Cucurbita moschata (Rifu)cmowmbB313
Cla97C01G003050Cucurbita moschata (Rifu)cmowmbB387
Cla97C01G003050Cucurbita moschata (Rifu)cmowmbB575
Cla97C01G003050Wild cucumber (PI 183967)cpiwmbB181
Cla97C01G003050Wild cucumber (PI 183967)cpiwmbB349
Cla97C01G003050Cucumber (Chinese Long) v3cucwmbB179
Cla97C01G003050Cucumber (Chinese Long) v3cucwmbB351
Cla97C01G003050Cucumber (Chinese Long) v2cuwmbB179
Cla97C01G003050Cucumber (Chinese Long) v2cuwmbB336
Cla97C01G003050Bottle gourd (USVL1VR-Ls)lsiwmbB315
Cla97C01G003050Melon (DHL92) v3.6.1medwmbB412
Cla97C01G003050Melon (DHL92) v3.5.1mewmbB424
Cla97C01G003050Watermelon (Charleston Gray)wcgwmbB214
Cla97C01G003050Watermelon (97103) v1wmwmbB193