Bhi12G000220 (gene) Wax gourd

Overview
NameBhi12G000220
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr12 : 7192598 .. 7193624 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGCTGGCTTTCTTCCTTAATAAAAAGACACTTCCCATTTTCCCATTTTCCATTTTCTATTTTCCATTTTCCTTCACTTTCTTCCAATTATTCTTTCTCAAAAAACCTCTCCATCTCTCTCTCCTCCATTGAAACACCTTTTAAAAAAAATCTCTCTCAAATAAAATGGCTTCTCAAAACCCCATTCCCCCTTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTCACTACCACCTCTCTCTCCGCCGCCCCACAACAACCGGAAAATGACTCTCTCCACCCCCACACCACCTCAACATTTTCATTCACACAGCCGCCCGCCGCCGTGGAAGACCAAAACTACGCCGTTTCGCTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAATCAAATCCAGCCTCCGATCTCGAAAGAAAAAATTATCCAATGAAGTTGTCTCGTAACAATTCTTCCATATAGGTTCGTAACACAATTTTCGAATTCTCTTACCACATCTAGTGTAAAATCCTCAGTCACATTATTCTAGTTTTTGAATAATTTTTTTCCACCGATCTTTTTTTGCAGTCACCTATAGCGCCAATAGGGTTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTCCCTTTTTTCATTTTTCTTTATACAGAAATATTGTGTAGAGCAATAAATATGTATGTGATGAAGATATATAAAAAAAAAACGACAGTGTTTGTTTATTTATTTATTTTGTTCATTGAAATTTGATTGATTTTTGTGAAGAAATTATATTATATAGAAAATTATAAGATCGAGAATTCCGCCGTGGTTGTATGTGAAAATTGAATGTTCTTAAGACTACAAGGAGATGGTGGGTTCAAGTTCCACAGTTCTTTTGAAATTTTGAGTCAAAATATTAATAATAATTAACGTTGAATTAAAAATTCATTTATTTGTCTTCTAATGATTTTTTTTAAACAGACAAATAAATATTTAATGCGATTGCCATTTGGTGGTAATAACAGCATTAAATTAATTAAT

mRNA sequence

GTTGCTGGCTTTCTTCCTTAATAAAAAGACACTTCCCATTTTCCCATTTTCCATTTTCTATTTTCCATTTTCCTTCACTTTCTTCCAATTATTCTTTCTCAAAAAACCTCTCCATCTCTCTCTCCTCCATTGAAACACCTTTTAAAAAAAATCTCTCTCAAATAAAATGGCTTCTCAAAACCCCATTCCCCCTTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTCACTACCACCTCTCTCTCCGCCGCCCCACAACAACCGGAAAATGACTCTCTCCACCCCCACACCACCTCAACATTTTCATTCACACAGCCGCCCGCCGCCGTGGAAGACCAAAACTACGCCGTTTCGCTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAATCAAATCCAGCCTCCGATCTCGAAAGAAAAAATTATCCAATGAAGTTGTCTCGTAACAATTCTTCCATATAGGTTCGTAACACAATTTTCGAATTCTCTTACCACATCTAGTGTAAAATCCTCAGTCACATTATTCTAGTTTTTGAATAATTTTTTTCCACCGATCTTTTTTTGCAGTCACCTATAGCGCCAATAGGGTTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTCCCTTTTTTCATTTTTCTTTATACAGAAATATTGTGTAGAGCAATAAATATGTATGTGATGAAGATATATAAAAAAAAAACGACAGTGTTTGTTTATTTATTTATTTTGTTCATTGAAATTTGATTGATTTTTGTGAAGAAATTATATTATATAGAAAATTATAAGATCGAGAATTCCGCCGTGGTTGTATGTGAAAATTGAATGTTCTTAAGACTACAAGGAGATGGTGGGTTCAAGTTCCACAGTTCTTTTGAAATTTTGAGTCAAAATATTAATAATAATTAACGTTGAATTAAAAATTCATTTATTTGTCTTCTAATGATTTTTTTTAAACAGACAAATAAATATTTAATGCGATTGCCATTTGGTGGTAATAACAGCATTAAATTAATTAAT

Coding sequence (CDS)

ATGGCTTCTCAAAACCCCATTCCCCCTTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTCACTACCACCTCTCTCTCCGCCGCCCCACAACAACCGGAAAATGACTCTCTCCACCCCCACACCACCTCAACATTTTCATTCACACAGCCGCCCGCCGCCGTGGAAGACCAAAACTACGCCGTTTCGCTCCGCAAAGTCCCCGCCGGTCCCAACCCACTTCATAACTAA

Protein sequence

MASQNPIPPSLFLFLFIILLTTTSLSAAPQQPENDSLHPHTTSTFSFTQPPAAVEDQNYAVSLRKVPAGPNPLHN
Homology
[Close]
BLAST of Bhi12G000220 vs. TrEMBL
Match: tr|A0A0A0KKA9|A0A0A0KKA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.2e-09
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 41 TTSTFSFTQPPAAVEDQ----NYAVSLRKVPAGPNPLHN 76
          TTSTFSFTQPPAAVEDQ    NY VSLRKVPAGPNPLHN
Sbjct: 51 TTSTFSFTQPPAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

[Close]
BLAST of Bhi12G000220 vs. NCBI nr
Match: KGN50125.1 (hypothetical protein Csa_5G154870 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 41 TTSTFSFTQPPAAVEDQ----NYAVSLRKVPAGPNPLHN 76
          TTSTFSFTQPPAAVEDQ    NY VSLRKVPAGPNPLHN
Sbjct: 51 TTSTFSFTQPPAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

The following BLAST results are available for this feature:
BLAST of Bhi12G000220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G000220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G000220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKA9|A0A0A0KKA9_CUCSA9.2e-0987.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1[more]
BLAST of Bhi12G000220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50125.11.4e-0887.18hypothetical protein Csa_5G154870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
biological_process GO:0030154 cell differentiation
biological_process GO:0007275 multicellular organism development
cellular_component GO:0005575 cellular_component
cellular_component GO:0048046 apoplast
cellular_component GO:0005576 extracellular region
cellular_component GO:0005615 extracellular space
molecular_function GO:0003674 molecular_function
molecular_function GO:0033612 receptor serine/threonine kinase binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000220Bhi12M000220mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..49

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi12G000220MELO3C005649Melon (DHL92) v3.5.1mewgoB003
Bhi12G000220ClCG01G002960Watermelon (Charleston Gray)wcgwgoB198
Bhi12G000220CmaCh15G012120Cucurbita maxima (Rimu)cmawgoB0365
Bhi12G000220CmaCh02G014740Cucurbita maxima (Rimu)cmawgoB0719
Bhi12G000220CmoCh02G015100Cucurbita moschata (Rifu)cmowgoB0712
Bhi12G000220CmoCh15G012760Cucurbita moschata (Rifu)cmowgoB0358
Bhi12G000220Lsi09G002870Bottle gourd (USVL1VR-Ls)lsiwgoB022
Bhi12G000220MELO3C005649.2Melon (DHL92) v3.6.1medwgoB001
Bhi12G000220Cla011472Watermelon (97103) v1wgowmB084
Bhi12G000220Cla97C01G003050Watermelon (97103) v2wgowmbB061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G000220Cucurbita moschata (Rifu)cmowgoB0425
Bhi12G000220Cucurbita moschata (Rifu)cmowgoB0500
Bhi12G000220Cucurbita pepo (Zucchini)cpewgoB0005
Bhi12G000220Cucurbita pepo (Zucchini)cpewgoB0226
Bhi12G000220Cucurbita pepo (Zucchini)cpewgoB0910
Bhi12G000220Wild cucumber (PI 183967)cpiwgoB254
Bhi12G000220Wild cucumber (PI 183967)cpiwgoB454
Bhi12G000220Cucumber (Chinese Long) v3cucwgoB256
Bhi12G000220Cucumber (Chinese Long) v3cucwgoB462
Bhi12G000220Cucumber (Chinese Long) v2cuwgoB254
Bhi12G000220Cucumber (Chinese Long) v2cuwgoB451
Bhi12G000220Bottle gourd (USVL1VR-Ls)lsiwgoB426
Bhi12G000220Melon (DHL92) v3.6.1medwgoB518
Bhi12G000220Melon (DHL92) v3.5.1mewgoB518
Bhi12G000220Watermelon (Charleston Gray)wcgwgoB414
Bhi12G000220Watermelon (97103) v2wgowmbB075
Bhi12G000220Watermelon (97103) v1wgowmB065
Bhi12G000220Silver-seed gourdcarwgoB1059
Bhi12G000220Silver-seed gourdcarwgoB1081
Bhi12G000220Wax gourdwgowgoB030
Bhi12G000220Cucumber (Gy14) v1cgywgoB602
Bhi12G000220Cucumber (Gy14) v2cgybwgoB241
Bhi12G000220Cucumber (Gy14) v2cgybwgoB427
Bhi12G000220Cucurbita maxima (Rimu)cmawgoB0429