Cla023280 (gene) Watermelon (97103) v1

NameCla023280
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR018892 Retro-transposon transporting, conserved site
LocationChr11 : 19216635 .. 19217273 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCAGTATTGGCAAGATGACGGGGAGAAGGAGAGACTGATCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCAGATAACTCCGCCTTCGATTTTGATTACTCTCAGAGCACCATCTGGTCTCCTTTGGTCCCTCGGCCTTACCATTCCATGGATTTGGATGTAATTACTCCCATCAAGCTTCCTTCTGATTTGGAAATGGCGACGGAGACGGCTGAGAAGAACAGCTTGAAAAAAGCAACCTCCAACCTCAAGAAGAAGCTTCTTTCCAATGGCTTCAGCATCGGTTTCGGCATTTCGAAAAGCAACAGGAAGATGAAGAGGATGAAGAACAAGAAATTGGCGTCTGATTTCTCCCCCACTCCTCTGCAAGGTGGTGCTTGCTATCCAAGTAACAAAAAGGTCAGTCGGGAATGTTCATTGATTCCACTTTTTTAGCTTTTGAAAGCTGCAAGATCTGTATAATGTTGTTCTTGCTGTTCTTCGCTGCATTTTAACTTATACTCCATGAATGTTTAGGGATGGAGCAAGTTACTCAAAGCAGCCACCAAGCATTTCAAAAAGAAGAAGAAGAAGGATCCCACTTCTCAAATGAAACTCTATTTCTAA

mRNA sequence

ATGAATTTGCAGTATTGGCAAGATGACGGGGAGAAGGAGAGACTGATCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCAGATAACTCCGCCTTCGATTTTGATTACTCTCAGAGCACCATCTGGTCTCCTTTGGTCCCTCGGCCTTACCATTCCATGGATTTGGATGTAATTACTCCCATCAAGCTTCCTTCTGATTTGGAAATGGCGACGGAGACGGCTGAGAAGAACAGCTTGAAAAAAGCAACCTCCAACCTCAAGAAGAAGCTTCTTTCCAATGGCTTCAGCATCGGTTTCGGCATTTCGAAAAGCAACAGGAAGATGAAGAGGATGAAGAACAAGAAATTGGCGTCTGATTTCTCCCCCACTCCTCTGCAAGGTGGTGCTTGCTATCCAAGTAACAAAAAGGGATGGAGCAAGTTACTCAAAGCAGCCACCAAGCATTTCAAAAAGAAGAAGAAGAAGGATCCCACTTCTCAAATGAAACTCTATTTCTAA

Coding sequence (CDS)

ATGAATTTGCAGTATTGGCAAGATGACGGGGAGAAGGAGAGACTGATCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCAGATAACTCCGCCTTCGATTTTGATTACTCTCAGAGCACCATCTGGTCTCCTTTGGTCCCTCGGCCTTACCATTCCATGGATTTGGATGTAATTACTCCCATCAAGCTTCCTTCTGATTTGGAAATGGCGACGGAGACGGCTGAGAAGAACAGCTTGAAAAAAGCAACCTCCAACCTCAAGAAGAAGCTTCTTTCCAATGGCTTCAGCATCGGTTTCGGCATTTCGAAAAGCAACAGGAAGATGAAGAGGATGAAGAACAAGAAATTGGCGTCTGATTTCTCCCCCACTCCTCTGCAAGGTGGTGCTTGCTATCCAAGTAACAAAAAGGGATGGAGCAAGTTACTCAAAGCAGCCACCAAGCATTTCAAAAAGAAGAAGAAGAAGGATCCCACTTCTCAAATGAAACTCTATTTCTAA

Protein sequence

MNLQYWQDDGEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKLYF
BLAST of Cla023280 vs. TrEMBL
Match: A0A0A0L354_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620590 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.2e-76
Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 1

Query: 1   MNLQYWQDDGEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHS 60
           MNLQ W+DD E+ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY+S
Sbjct: 1   MNLQSWEDD-EEERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYNS 60

Query: 61  MDLDVITPIKLPSDLEMA--TETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKMKR 120
           MDLDVITPIKLPSD E A  T  A KNS KKATSNL+KK L NGFS+ FGISKS RK   
Sbjct: 61  MDLDVITPIKLPSDFENAPVTAMAGKNSFKKATSNLRKKFLYNGFSVCFGISKSYRK--- 120

Query: 121 MKNKKLASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKLYF 174
           MKNKKL SDFSPTP+QGGACYP+NKKGWSKLL+AATKHFKKKKKKDPTSQMKLYF
Sbjct: 121 MKNKKLVSDFSPTPIQGGACYPNNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF 171

BLAST of Cla023280 vs. TrEMBL
Match: M5X853_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024004mg PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-39
Identity = 95/180 (52.78%), Postives = 127/180 (70.56%), Query Frame = 1

Query: 4   QYWQDDGEKERLI------KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRP 63
           Q  +++ E+ER I      KVVEYL+P+MSKELLCKFPDNSAFDFDY+QS+IWSPLVPR 
Sbjct: 15  QEQEEEEERERFIVLSSTCKVVEYLQPVMSKELLCKFPDNSAFDFDYTQSSIWSPLVPRA 74

Query: 64  YHSMDLDV----ITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSN 123
           +  MDLD+    +TP KL  + EM  E   ++S+KK +S++KKK+ + GF+I     K+ 
Sbjct: 75  HAPMDLDLDFDFMTPRKL--NFEMGLELESQSSIKKVSSSIKKKISTAGFNISRSALKNK 134

Query: 124 RKMKRMKNKK--LASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKL 172
           +K K+ K  K  LASDFSPTP++   C P   K W+K+LKAA+KHF KKKK+DP   ++L
Sbjct: 135 KKKKKKKKSKMALASDFSPTPVK-VHCNPLASKVWNKVLKAASKHF-KKKKRDPMDHVRL 190

BLAST of Cla023280 vs. TrEMBL
Match: A9PI78_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00980g PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-38
Identity = 92/174 (52.87%), Postives = 124/174 (71.26%), Query Frame = 1

Query: 7   QDDGEKERLI--KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLD 66
           +++ E  RLI  KVVEYLEP+MSKELL KFPDNSAFDFDY+QS+IWSPLVPR Y  MDLD
Sbjct: 12  EEEEETARLISCKVVEYLEPVMSKELLFKFPDNSAFDFDYAQSSIWSPLVPRNYSPMDLD 71

Query: 67  VITPIKLPSDL--EMATETAEKNSLKKATSNL--KKKLLSNGFSI---GFGISKSNRKMK 126
           ++TP K+      E+  + + ++  KK +S++  KKK++    +I    F +S S  K+K
Sbjct: 72  LVTPTKIAFGFGSELDNKNSSRSGSKKLSSSIKKKKKMMMKKMAISTTAFNVSLS--KLK 131

Query: 127 RMKNKKLASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKL 172
             K+K   S+FSPT ++  +C P   KGW+K+LKAATKHFKK+KKKDPT+ +KL
Sbjct: 132 IRKHKVKVSEFSPTSIK-TSCVPFPTKGWNKVLKAATKHFKKRKKKDPTAHVKL 182

BLAST of Cla023280 vs. TrEMBL
Match: C6SZU2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G004200 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 92/167 (55.09%), Postives = 113/167 (67.66%), Query Frame = 1

Query: 11  EKERLI----KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVI 70
           E+E L+    KVVEYL P MS ELLCKFPDNSA+DFDYSQSTIWSPL+PRPY  MDLD+I
Sbjct: 10  EEEALVLKTTKVVEYLVPKMSIELLCKFPDNSAYDFDYSQSTIWSPLLPRPYSPMDLDLI 69

Query: 71  TPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKMKRMKNKKLAS 130
           TP KL  D+ +      K S+KK  S L+KK  ++ F++     K N K    KNKKL S
Sbjct: 70  TPKKLSYDMGLGA----KCSVKKVGSKLRKKFTASAFNLNLDFIKKNSK---SKNKKLPS 129

Query: 131 DFSPTPLQGGACYPSNKKGWSKLLKAATKHFK--KKKKKDPTSQMKL 172
           DFSPTP + GAC P   K W++ LKAA+K FK  K K++DP + + L
Sbjct: 130 DFSPTPFK-GACNPILNKRWARALKAASKQFKKWKVKRRDPIAHVML 168

BLAST of Cla023280 vs. TrEMBL
Match: K7LYA3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 92/167 (55.09%), Postives = 113/167 (67.66%), Query Frame = 1

Query: 11  EKERLI----KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVI 70
           E+E L+    KVVEYL P MS ELLCKFPDNSA+DFDYSQSTIWSPL+PRPY  MDLD+I
Sbjct: 91  EEEALVLKTTKVVEYLVPKMSIELLCKFPDNSAYDFDYSQSTIWSPLLPRPYSPMDLDLI 150

Query: 71  TPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKMKRMKNKKLAS 130
           TP KL  D+ +      K S+KK  S L+KK  ++ F++     K N K    KNKKL S
Sbjct: 151 TPKKLSYDMGLGA----KCSVKKVGSKLRKKFTASAFNLNLDFIKKNSK---SKNKKLPS 210

Query: 131 DFSPTPLQGGACYPSNKKGWSKLLKAATKHFK--KKKKKDPTSQMKL 172
           DFSPTP + GAC P   K W++ LKAA+K FK  K K++DP + + L
Sbjct: 211 DFSPTPFK-GACNPILNKRWARALKAASKQFKKWKVKRRDPIAHVML 249

BLAST of Cla023280 vs. NCBI nr
Match: gi|449456524|ref|XP_004145999.1| (PREDICTED: uncharacterized protein LOC101221004 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 3.1e-76
Identity = 149/175 (85.14%), Postives = 157/175 (89.71%), Query Frame = 1

Query: 1   MNLQYWQDDGEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHS 60
           MNLQ W+DD E+ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY+S
Sbjct: 1   MNLQSWEDD-EEERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYNS 60

Query: 61  MDLDVITPIKLPSDLEMA--TETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKMKR 120
           MDLDVITPIKLPSD E A  T  A KNS KKATSNL+KK L NGFS+ FGISKS RK   
Sbjct: 61  MDLDVITPIKLPSDFENAPVTAMAGKNSFKKATSNLRKKFLYNGFSVCFGISKSYRK--- 120

Query: 121 MKNKKLASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKLYF 174
           MKNKKL SDFSPTP+QGGACYP+NKKGWSKLL+AATKHFKKKKKKDPTSQMKLYF
Sbjct: 121 MKNKKLVSDFSPTPIQGGACYPNNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF 171

BLAST of Cla023280 vs. NCBI nr
Match: gi|659129334|ref|XP_008464634.1| (PREDICTED: uncharacterized protein LOC103502470 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-75
Identity = 147/173 (84.97%), Postives = 155/173 (89.60%), Query Frame = 1

Query: 1   MNLQYWQDDGEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHS 60
           MNLQ W+DD E+ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY+S
Sbjct: 1   MNLQSWEDD-EEERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYNS 60

Query: 61  MDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKMKRMK 120
           MDLDVITPIKLPSD    T  AEKNS KKATSNLKKKLLSN F IGFGISKS RK   MK
Sbjct: 61  MDLDVITPIKLPSDF---TRMAEKNSFKKATSNLKKKLLSNRFGIGFGISKSYRK---MK 120

Query: 121 NKKLASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKLYF 174
           N KL SDFSP+P++GGACYP+NKKGWSKLL+AATKHFKKKKKKDPTS MKLYF
Sbjct: 121 NNKLVSDFSPSPIRGGACYPNNKKGWSKLLRAATKHFKKKKKKDPTSHMKLYF 166

BLAST of Cla023280 vs. NCBI nr
Match: gi|595953295|ref|XP_007216499.1| (hypothetical protein PRUPE_ppa024004mg [Prunus persica])

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-39
Identity = 95/180 (52.78%), Postives = 127/180 (70.56%), Query Frame = 1

Query: 4   QYWQDDGEKERLI------KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRP 63
           Q  +++ E+ER I      KVVEYL+P+MSKELLCKFPDNSAFDFDY+QS+IWSPLVPR 
Sbjct: 15  QEQEEEEERERFIVLSSTCKVVEYLQPVMSKELLCKFPDNSAFDFDYTQSSIWSPLVPRA 74

Query: 64  YHSMDLDV----ITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSN 123
           +  MDLD+    +TP KL  + EM  E   ++S+KK +S++KKK+ + GF+I     K+ 
Sbjct: 75  HAPMDLDLDFDFMTPRKL--NFEMGLELESQSSIKKVSSSIKKKISTAGFNISRSALKNK 134

Query: 124 RKMKRMKNKK--LASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKL 172
           +K K+ K  K  LASDFSPTP++   C P   K W+K+LKAA+KHF KKKK+DP   ++L
Sbjct: 135 KKKKKKKKSKMALASDFSPTPVK-VHCNPLASKVWNKVLKAASKHF-KKKKRDPMDHVRL 190

BLAST of Cla023280 vs. NCBI nr
Match: gi|224089603|ref|XP_002308774.1| (hypothetical protein POPTR_0006s00980g [Populus trichocarpa])

HSP 1 Score: 165.6 bits (418), Expect = 7.6e-38
Identity = 92/174 (52.87%), Postives = 124/174 (71.26%), Query Frame = 1

Query: 7   QDDGEKERLI--KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLD 66
           +++ E  RLI  KVVEYLEP+MSKELL KFPDNSAFDFDY+QS+IWSPLVPR Y  MDLD
Sbjct: 12  EEEEETARLISCKVVEYLEPVMSKELLFKFPDNSAFDFDYAQSSIWSPLVPRNYSPMDLD 71

Query: 67  VITPIKLPSDL--EMATETAEKNSLKKATSNL--KKKLLSNGFSI---GFGISKSNRKMK 126
           ++TP K+      E+  + + ++  KK +S++  KKK++    +I    F +S S  K+K
Sbjct: 72  LVTPTKIAFGFGSELDNKNSSRSGSKKLSSSIKKKKKMMMKKMAISTTAFNVSLS--KLK 131

Query: 127 RMKNKKLASDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKL 172
             K+K   S+FSPT ++  +C P   KGW+K+LKAATKHFKK+KKKDPT+ +KL
Sbjct: 132 IRKHKVKVSEFSPTSIK-TSCVPFPTKGWNKVLKAATKHFKKRKKKDPTAHVKL 182

BLAST of Cla023280 vs. NCBI nr
Match: gi|645247014|ref|XP_008229631.1| (PREDICTED: uncharacterized protein LOC103328981 [Prunus mume])

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 92/177 (51.98%), Postives = 124/177 (70.06%), Query Frame = 1

Query: 7   QDDGEKERLI------KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHS 66
           +++ E+ER I      KVVEYL+P+MSKELLCKFPDNSAFDFDY+QS+IWSPLVPR +  
Sbjct: 19  EEEEERERFIVLSSTCKVVEYLQPVMSKELLCKFPDNSAFDFDYTQSSIWSPLVPRAHAP 78

Query: 67  MDLDV----ITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKM 126
           MDLD+    +TP KL  + EM  E   ++S+KK +S++KKK+ + GF+I     K+    
Sbjct: 79  MDLDLDFDFMTPRKL--NFEMGLELESQSSIKKVSSSIKKKISTAGFNISRSALKNKMMK 138

Query: 127 KRMKNKKLA--SDFSPTPLQGGACYPSNKKGWSKLLKAATKHFKKKKKKDPTSQMKL 172
           K+ K  K+A  SDFSPTP++   C P   K W+K+LKAA+KHF KKKK+DP   ++L
Sbjct: 139 KKKKKSKMALTSDFSPTPVK-VHCNPLASKVWNKVLKAASKHF-KKKKRDPMDHVRL 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L354_CUCSA2.2e-7685.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620590 PE=4 SV=1[more]
M5X853_PRUPE3.7e-3952.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024004mg PE=4 SV=1[more]
A9PI78_POPTR5.3e-3852.87Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00980g PE=2 SV=1[more]
C6SZU2_SOYBN1.5e-3755.09Uncharacterized protein OS=Glycine max GN=GLYMA_13G004200 PE=2 SV=1[more]
K7LYA3_SOYBN1.5e-3755.09Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449456524|ref|XP_004145999.1|3.1e-7685.14PREDICTED: uncharacterized protein LOC101221004 [Cucumis sativus][more]
gi|659129334|ref|XP_008464634.1|2.0e-7584.97PREDICTED: uncharacterized protein LOC103502470 [Cucumis melo][more]
gi|595953295|ref|XP_007216499.1|5.2e-3952.78hypothetical protein PRUPE_ppa024004mg [Prunus persica][more]
gi|224089603|ref|XP_002308774.1|7.6e-3852.87hypothetical protein POPTR_0006s00980g [Populus trichocarpa][more]
gi|645247014|ref|XP_008229631.1|1.3e-3751.98PREDICTED: uncharacterized protein LOC103328981 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla023280Cla023280.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34287FAMILY NOT NAMEDcoord: 16..171
score: 6.2
NoneNo IPR availablePANTHERPTHR34287:SF4SUBFAMILY NOT NAMEDcoord: 16..171
score: 6.2