Cla023190 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023190
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Topoisomerase (DNA) II binding protein 1 (AHRD V1 **-- F4I701_ARATH); contains Interpro domain(s) IPR001357 BRCT
Location	Chr11 : 18336236 .. 18339448 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGGTAACTTCATGATTCTGTTGCTCTTCAATTATATATGTTCATATACATGCATGTTCTGATAGAAACATAGAACCCATTCTATTATCTTTTTTTCTCTTAGATATGGAGTGATATTGTTTGAATACAAAATTTTCAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCAATTCTGCTGTCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCTGCAATTGAGGACTTGTTGGAGCAGACAACTAAGGTAGAATCTGGGTAGAGCTTTAATTCCATTACTTCATTCCGTTTTTATTTTCTTTTCCTCAAATCCTTTTGTTCCTTTTTCTTTTTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTGTATCCTTCTATTGAGATTGATGCTTTTTATGTTTAAACTTTTGGTTTCGTTTGCATTTGGTTTAATCCTTAATGGTACCAGACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGGTAAATTTTGACATTTTCTCCTTGATCTTCTTATGGAAAGACCATGCTGAATTGGAGTACTTAACAAGAACCGTTGCTGAATTGAAATTTTGTGAGACCATCTGACAAAGTCATTATGAAAGTCAGTTTATTTTCACCTTTATTTTTTATAAATATTTTTTAAAATTAAAAAAAATATATACATATTTGTATATCTTCTTAGTCTTCACTCATGAATTGTTTCCTAGAACAATAAAGTTCATACTTCTTTCAAAATAGGTTCTTTTTGAGTAATAATATTAAGGGTAAATTATAAAAAATGCCCTTGAATTTTGTACTTTGCGTCAAAAATACCCCTAAATTTCTAAAGTTACAAAAATACTCTTGAACTTAAAAAAGTTCACAAATACCCTTACTGTTAATATGAATAGAAACTGTTAATACCTCGTTGCAAAAATAACTCTAAAATTAAAAAGAAAAAAAATGTTTAAAAATGCTCATACCCTTAGTATAGTGATCAATTAATGGTTTCTATTCATATACTAACACTGGTGAACCTTTTGAAAGTTTAGGGGTATTTTTTATACAAAACATGTGTTTCCATCCAAAATTAACGGTAAAGGTATTTTTGAGCTATGCTATCCTTGAGTAGTTTTATTTTGTTTTGTTTTGTTTTTTTTGTTTTTTTAAAGGAAACACAACTTTTCATTGATAAAATGAAAAGTCTTTTGCTCAAAATACAAGGATACAAAATAAAGAGCCAAAAAACATAAGAAGTATAACCCAAGAGGACCTGTCATGAGAAAAAAGGCTATAAAAAAACTAGTTTTGGAATTAAAAGCAGTAGGTTATTTTTTGAACTAACTATTAAACATCCCTGTAGTTTAAGGTGCTTTTAGCAGGTTGAAAACTTAGTGTCTTTTTACATATTTTTAAGCCTTCATTGATATTATTTCCTAGAACAATAAAGGTTTTACATTCATTCAAAATAGGTTCTTTTGAGTTATAATTTTAATGCAAAACTAAAATCATCCCGAATGCTATTCTTAAAAACTAGCATTCGTGTTCTTGAGTAGTTTTGGAAATAAAGGCAGTAGGTTTTTTTTTTTTAAACTAGCTATTAAACATCCCTGTATTTTAAGGTTGTTTTAGTTAATGAAAACTTTCCACTAAGTATATTGATTAAAAGAGCATTTCACTTGAAAACTCAGCCCTAAAAAAACTACATTGAAATTACTCTGAACTGTTAAGTACGGACACATTTTAGTTTTGCCTTTGTATACTCAGATTCTGAGATTTTTGTGTCTTCAATATTCTCAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTGTGTGCGCATTAATTTTTGTCAATTATAACTCTATAGCAATTATAGTGATGGAATTTTTAAAATTTATTACCCTTTTTGTCGACGTGATTTCAAGAGAACTAAATAAACTACAACTCATAAGACTTTAGAATATCATTGAAGTTGAAACTCATTACTTTTTACTTTTACCTTTTTGTTTTAACAATCTAGCTAACTTTTTTACTTAAGAAAGATAACCTTGATAGACTTAATTTTCAAAAACTAAAAACAAAAAACTAAGGTCCCATTTGGTAACCATTTCGGCTTGTGTTTTTGGTTTTTTAAAATTTAGCCTATTTTCTCTCCTTTTCTTACAATGGTTTACATATTTTTTAAGTAGTTGAATTCTTAGCCAAATTTAAAAAACAGAAACAAGTTTTTGAAAACTTATTTTTTTGGTTTCAAATTTTGGTTTAATTTTTGAAAACATTAATAAAAGGTAGATAACAAAAGCAAAAAATTTAAACGTATAAGAGGTGTTCATAGGCTTAATTTTTTAATACTAAGAGCAAAAAACTAAATGGTTACCAAACGGGGCCTTAGTTATTGGTTCTAGCCTGTTAACAACTCAATCTTTGTAGGTTGTGGGTTATGAAGAGGATTTGTCCGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA

mRNA sequence

ATGAAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCAATTCTGCTGTCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCTGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCCGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA

Coding sequence (CDS)

ATGAAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCAATTCTGCTGTCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCTGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCCGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA

Protein sequence

MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT

Homology

[Close]

BLAST of Cla023190 vs. Swiss-Prot
Match: TOB1A_XENLA (DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 7.6e-10
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 1


Query: 6   LWDTNGHILYSPLPCCVPLSGFEKIRFCV---SQYDDKDRVLLRNLCFVLGAKFVEKLTK 65
           L D + + L++P+P    L G   +R CV   SQ+   +R  L  L  +LGAK  E   +
Sbjct: 613 LLDPHSNALFTPVPF---LEGSTPLRECVLSVSQFMGAERDSLVYLAGLLGAKVQEFFVR 672

Query: 66  KV---------THLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEV 125
           K          THL+ K ++G+KYEAA KW + +VT  W+ +C R  +    D Y    V
Sbjct: 673 KANPKKGMFASTHLVLKDAEGSKYEAAKKWNLPAVTMNWLLQCARTGRKADEDSYLVDNV 732

Query: 126 TAQDRAAGICTVSQFPTQAVQM 136
             +D+     + +  P QA+++
Sbjct: 733 PEEDKDESFISQTYKP-QAIRL 750

HSP 2 Score: 47.4 bits (111), Expect = 3.6e-04
Identity = 32/145 (22.07%), Postives = 61/145 (42.07%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLT-KKVTHLICKFSDGTKYEAACKWGI 86
           F     CV+     DR  ++ L  + G ++  +L   + THLI + + G KYE A KW +
Sbjct: 199 FRGCTICVTGLSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWNV 258

Query: 87  HSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFP 146
           H ++ +W ++ + +       +Y+ +  +         T+   P                
Sbjct: 259 HCISVQWFFDSIEKGFCQDETMYKIEPAS---------TIKSVP---------------- 317

Query: 147 INSAVPRDQSAGTNSSTIGEVEQIS 171
            +++ P   ++  NS T+ +V QIS
Sbjct: 319 -DTSTPTGGNSKPNSRTLYDVSQIS 317

[Close]

BLAST of Cla023190 vs. Swiss-Prot
Match: TOB1B_XENLA (DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis GN=topbp1-B PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-09
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 1


Query: 6   LWDTNGHILYSPLPCCVPLSGFEKIRFCV---SQYDDKDRVLLRNLCFVLGAKFVEKLTK 65
           L D + + L++P+P    L G   +R CV   SQ+   +R  L  L  +LGAK  E   +
Sbjct: 613 LLDPHSNALFTPVPF---LEGSTPLRECVLSVSQFMGAERDSLVYLAGLLGAKVQEFFVR 672

Query: 66  KV---------THLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEV 125
           K          +HL  K ++G+KYEAA KW + +VT  W+ +C R  K    D Y    V
Sbjct: 673 KANPKKGMFARSHLDLKDAEGSKYEAAKKWNLPAVTMNWLLQCARTGKKADEDSYLVDNV 732

Query: 126 TAQDRAAGICTVSQFPTQAVQM 136
             +D+       +  P QA+++
Sbjct: 733 PEEDKDESFINQTYKP-QAIRL 750

HSP 2 Score: 45.8 bits (107), Expect = 1.1e-03
Identity = 32/145 (22.07%), Postives = 61/145 (42.07%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLT-KKVTHLICKFSDGTKYEAACKWGI 86
           F     CV+     DR  ++ L  + G ++  +L   + THLI + + G KYE A KW +
Sbjct: 199 FRGCTICVTGLSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWIV 258

Query: 87  HSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFP 146
           H ++ +W ++ + +       +Y+ +  +         T+   P                
Sbjct: 259 HCISVQWFFDSIEKGFCQDETMYKIEPAS---------TIKSVP---------------- 317

Query: 147 INSAVPRDQSAGTNSSTIGEVEQIS 171
            +++ P   ++  NS T+ +V QIS
Sbjct: 319 -DTSTPTGGNSKPNSRTLYDVSQIS 317

[Close]

BLAST of Cla023190 vs. Swiss-Prot
Match: RAD4_SCHPO (S-M checkpoint control protein rad4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad4 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-07
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 1


Query: 29  KIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSV 88
           K R C++     +R  + N     G  F   LT+ VTHLI   S G KYE A KW I+ V
Sbjct: 104 KCRVCLTNIGQPERSRIENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVV 163

Query: 89  TAEWIYECVRQSKIV 104
             EW+++ ++++ ++
Sbjct: 164 CVEWLWQSIQRNAVL 178

[Close]

BLAST of Cla023190 vs. Swiss-Prot
Match: TOPB1_HUMAN (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-06
Identity = 36/123 (29.27%), Postives = 54/123 (43.90%), Query Frame = 1


Query: 6   LWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV- 65
           L+D   + L++P+P    ++  E      SQ    ++  L  L  +LGA   E   +K  
Sbjct: 625 LFDPKSNPLFTPVPVMTGMTPLEDCVISFSQCAGAEKESLTFLANLLGASVQEYFVRKSN 684

Query: 66  --------THLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQ 120
                   THLI K   G+KYEAA KW + +VT  W+ E  R  K      +  +  T +
Sbjct: 685 AKKGMFASTHLILKERGGSKYEAAKKWNLPAVTIAWLLETARTGKRADESHFLIENSTKE 744

HSP 2 Score: 46.2 bits (108), Expect = 8.1e-04
Identity = 33/139 (23.74%), Postives = 56/139 (40.29%), Query Frame = 1


Query: 33  CVSQYDDKDRVLLRNLCFVLGAKFVEKLT-KKVTHLICKFSDGTKYEAACKWGIHSVTAE 92
           CV+     DR  ++ L    G +++ +L   + THLI +   G KYE A +W +H VT +
Sbjct: 206 CVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQ 265

Query: 93  WIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPINSAVP 152
           W ++ + +                     G C       +++       E++   NS+ P
Sbjct: 266 WFFDSIEK---------------------GFC-----QDESIYKTEPRPEAKTMPNSSTP 318

Query: 153 RDQSAGTNSSTIGEVEQIS 171
             Q    +S T+ +V  IS
Sbjct: 326 TSQINTIDSRTLSDVSNIS 318

[Close]

BLAST of Cla023190 vs. TrEMBL
Match: F6H0I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g01810 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 3.9e-106
Identity = 197/338 (58.28%), Postives = 244/338 (72.19%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCL D + HILYSPLPC +PL GFEK+RFCVSQY++KDR+LLRNLCFVLGAKFVEKL
Sbjct: 599 LEDGCLLDVSSHILYSPLPCQIPLPGFEKLRFCVSQYEEKDRLLLRNLCFVLGAKFVEKL 658

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHL+CKF+ G KYEAACKWGI +VT+EWIYEC++Q+ +V +D + PKE+TA DR A
Sbjct: 659 TKKVTHLLCKFTGGPKYEAACKWGIKAVTSEWIYECIKQNGVVYVDSFCPKEITAHDRQA 718

Query: 121 GICTVSQFPTQAVQMIASESESQFPINS----AVPRDQSAGTNSSTIGEVEQISFTKKKR 180
           G+C +SQ+PTQA QMI+++  SQ P  S     +P       +     E    S   K+ 
Sbjct: 719 GLCIMSQYPTQAAQMISADKGSQLPTQSHDLGDIPTQSICNRSDRFNEEARHSSVHAKRA 778

Query: 181 KFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSH-VPDVAAAIEDLLEQTTKI 240
           + L++  QK     G     F   +NS+  T +  +  TSH VPDVAAAIEDLLEQT+KI
Sbjct: 779 RLLEDESQKTVPPSGAQDMDFISKMNSSGTTITAVTEETSHVVPDVAAAIEDLLEQTSKI 838

Query: 241 HDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSV 300
           HD KSPG+TGC+K  F  DCS +GQ+H+++     LS  W  R E+K+DI NP  GD   
Sbjct: 839 HDLKSPGRTGCEKHLFSSDCSPLGQDHADSHSSFDLSKHWLNRIEKKDDICNP-PGDVKA 898

Query: 301 GIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSM 334
             YDGFSETQT+SQVVGYEEDLSGRQM+IDRVRTRSSM
Sbjct: 899 STYDGFSETQTESQVVGYEEDLSGRQMIIDRVRTRSSM 935

[Close]

BLAST of Cla023190 vs. TrEMBL
Match: U5GIX9_POPTR (BRCT domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20500g PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 8.7e-106
Identity = 198/339 (58.41%), Postives = 247/339 (72.86%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++ GCL D   HI+YSPLPC +PL GFEK RFC+SQY++KDR+LLRNLCFVLGAKFVEKL
Sbjct: 626 LEGGCLLDIGSHIIYSPLPCRIPLPGFEKFRFCISQYEEKDRLLLRNLCFVLGAKFVEKL 685

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           T+KVTHL+CKF+ G KYEAACKW I  +T+EWIYECVRQ+++V++D +RPKE+T+QD  A
Sbjct: 686 TRKVTHLLCKFTSGPKYEAACKWDICLITSEWIYECVRQNEVVAVDQFRPKEITSQDEEA 745

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIG----EVEQISFTKKKR 180
           G+CT SQFPTQ VQM++ E+ SQF       R+ SA    S I     E +Q     KK 
Sbjct: 746 GLCTESQFPTQDVQMMSGENASQFITQPQGLRNSSAQNGGSLINSFMEEAQQSIDICKKA 805

Query: 181 KFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSH-VPDVAAAIEDLLEQTTKI 240
           K   +  QK  L      S    N+NST+   +K +  +SH +PDVAAAIEDLLEQT+KI
Sbjct: 806 KIFKDNDQKSLLSSRVHLSDSTLNMNSTEGDNAKDNGESSHDIPDVAAAIEDLLEQTSKI 865

Query: 241 HDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSV 300
            DQKSPG++GCDKS F  DCS++G+ H  +P + GL   W  R  R++++S+P   +G  
Sbjct: 866 QDQKSPGRSGCDKSLFSSDCSMLGEGHGGSPSVIGLPKHWLSRTGRRDELSSPKEANG-- 925

Query: 301 GIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 335
           G YD FSETQTDSQVVGYEEDL+GRQMLIDRVRTRSSMT
Sbjct: 926 GPYDSFSETQTDSQVVGYEEDLTGRQMLIDRVRTRSSMT 962

[Close]

BLAST of Cla023190 vs. TrEMBL
Match: A0A061FPG8_THECC (Topbp1, putative isoform 1 OS=Theobroma cacao GN=TCM_035208 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.6e-104
Identity = 203/338 (60.06%), Postives = 247/338 (73.08%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCL D   HILYSPLPC +P  GF+  RFCVSQY++KDR+LLRNLCF+LGAKFVEKL
Sbjct: 642 LEDGCLLDVGCHILYSPLPCQIPFPGFKSFRFCVSQYEEKDRLLLRNLCFILGAKFVEKL 701

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHL+CKF+ G KYEAACKWGI+SVTAEWIYECV Q+K+VSLD + PKEVTAQDR A
Sbjct: 702 TKKVTHLLCKFTSGPKYEAACKWGIYSVTAEWIYECVSQNKVVSLDPFFPKEVTAQDREA 761

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTI----GEVEQISFTKKKR 180
           G+CTVSQFPTQAVQM++ +  SQF   S   R Q+ G    +I     E EQ +   K+ 
Sbjct: 762 GLCTVSQFPTQAVQMMSVDIPSQFMTQSQDLRTQTLGGKIESIIGGRDEAEQSNVHLKRA 821

Query: 181 KFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHV-PDVAAAIEDLLEQTTKI 240
           + ++E  Q   L           N NST+   SK     + V PDVAAAIEDLLEQT+KI
Sbjct: 822 RCMEEDDQNGLLASVVHLCEPVLNENSTENNKSKIVGEAAQVLPDVAAAIEDLLEQTSKI 881

Query: 241 HDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSV 300
           HDQKSP + GCDKS F  D + + Q+H+++  + GLS  W  R  +K++  +  +GDG+ 
Sbjct: 882 HDQKSPERNGCDKSIFSSDRTGLCQDHTDSHSVIGLSRHWLNRTVKKDETCS-YSGDGNA 941

Query: 301 GIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSM 334
           G+YDGFSETQT+SQVVGYEEDLSGRQMLIDRVRTRSSM
Sbjct: 942 GLYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 978

[Close]

BLAST of Cla023190 vs. TrEMBL
Match: A0A061FPG8_THECC (Topbp1, putative isoform 1 OS=Theobroma cacao GN=TCM_035208 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWG-I 86
           F  +  CV++    +R  +  L    G K+  +LTKK THLIC   +G KY+ A +WG +
Sbjct: 189 FSGLTICVTRIPADERKEIEKLIIQNGGKYSAELTKKCTHLICDAPEGDKYKVARRWGHV 248

Query: 87  HSVTAEWIYECVRQSKIVSLDLY 109
           H V  +W  + + +   ++ + Y
Sbjct: 249 HIVVRKWFDQSIARRACLNEESY 271

HSP 2 Score: 382.9 bits (982), Expect = 4.1e-103
Identity = 203/339 (59.88%), Postives = 247/339 (72.86%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCL D   HILYSPLPC +P  GF+  RFCVSQY++KDR+LLRNLCF+LGAKFVEKL
Sbjct: 642 LEDGCLLDVGCHILYSPLPCQIPFPGFKSFRFCVSQYEEKDRLLLRNLCFILGAKFVEKL 701

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHL+CKF+ G KYEAACKWGI+SVTAEWIYECV Q+K+VSLD + PKEVTAQDR A
Sbjct: 702 TKKVTHLLCKFTSGPKYEAACKWGIYSVTAEWIYECVSQNKVVSLDPFFPKEVTAQDREA 761

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTI----GEVEQISFTKKKR 180
           G+CTVSQFPTQAVQM++ +  SQF   S   R Q+ G    +I     E EQ +   K+ 
Sbjct: 762 GLCTVSQFPTQAVQMMSVDIPSQFMTQSQDLRTQTLGGKIESIIGGRDEAEQSNVHLKRA 821

Query: 181 KFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHV-PDVAAAIEDLLEQTTKI 240
           + ++E  Q   L           N NST+   SK     + V PDVAAAIEDLLEQT+KI
Sbjct: 822 RCMEEDDQNGLLASVVHLCEPVLNENSTENNKSKIVGEAAQVLPDVAAAIEDLLEQTSKI 881

Query: 241 HDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSV 300
           HDQKSP + GCDKS F  D + + Q+H+++  + GLS  W  R  +K++  +  +GDG+ 
Sbjct: 882 HDQKSPERNGCDKSIFSSDRTGLCQDHTDSHSVIGLSRHWLNRTVKKDETCS-YSGDGNA 941

Query: 301 GIYDGFSETQTDSQ-VVGYEEDLSGRQMLIDRVRTRSSM 334
           G+YDGFSETQT+SQ VVGYEEDLSGRQMLIDRVRTRSSM
Sbjct: 942 GLYDGFSETQTESQVVVGYEEDLSGRQMLIDRVRTRSSM 979

[Close]

BLAST of Cla023190 vs. TrEMBL
Match: A0A061FGG9_THECC (Topbp1, putative isoform 2 OS=Theobroma cacao GN=TCM_035208 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWG-I 86
           F  +  CV++    +R  +  L    G K+  +LTKK THLIC   +G KY+ A +WG +
Sbjct: 189 FSGLTICVTRIPADERKEIEKLIIQNGGKYSAELTKKCTHLICDAPEGDKYKVARRWGHV 248

Query: 87  HSVTAEWIYECVRQSKIVSLDLY 109
           H V  +W  + + +   ++ + Y
Sbjct: 249 HIVVRKWFDQSIARRACLNEESY 271

HSP 2 Score: 382.1 bits (980), Expect = 6.9e-103
Identity = 196/338 (57.99%), Postives = 249/338 (73.67%), Query Frame = 1


Query: 1    MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
            ++DGCL D + HILY+PLPC +PL GFE  RFCVSQY++KDR+LLRNLCFVLGAKF EKL
Sbjct: 684  LEDGCLLDVSSHILYAPLPCRIPLPGFENFRFCVSQYEEKDRLLLRNLCFVLGAKFGEKL 743

Query: 61   TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
            TKKVTHL+CKF++G KY+AAC  GIH +TAEW+YECV+++K+V+LD + PK+VTA+DR A
Sbjct: 744  TKKVTHLLCKFTNGPKYQAACIKGIHPITAEWVYECVKKNKVVALDQFYPKKVTAEDREA 803

Query: 121  GICTVSQFPTQAVQMIASESESQFPINSAVPRDQS----AGTNSSTIGEVEQISFTKKKR 180
            G+CT+SQ+PTQAVQMI++ + S+ P  S   R  S       N S   E  + SF  KK 
Sbjct: 804  GLCTMSQYPTQAVQMISAGNSSECPSQSQDLRTSSGENIGSRNDSLREEASEPSFCNKKA 863

Query: 181  KFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSH-VPDVAAAIEDLLEQTTKI 240
            +  ++  +K  L   +S  H      +T +   KSS   S  VPDVA+AIEDLLEQT+KI
Sbjct: 864  RVSEDDGEKGLL---SSGVHLRIPACTTGDRKVKSSGEVSQVVPDVASAIEDLLEQTSKI 923

Query: 241  HDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSV 300
            HDQKSPG++ CD S F P+CS + Q+HS+A  + GLS  W  RA +K+DI  P+  +   
Sbjct: 924  HDQKSPGRSLCDSSIFSPECSALRQDHSDAHSVIGLSRHWLNRAGKKDDIHYPSE-EQKA 983

Query: 301  GIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSM 334
            G+YDGFSETQT+SQVVGYEEDLSGRQMLIDRVRTRSS+
Sbjct: 984  GLYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSL 1017

[Close]

BLAST of Cla023190 vs. NCBI nr
Match: gi|659086957|ref|XP_008444199.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 592.8 bits (1527), Expect = 3.7e-166
Identity = 285/334 (85.33%), Postives = 310/334 (92.81%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCLW TNGHILYSPLPCCVPLSGFE IRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL
Sbjct: 637 LEDGCLWATNGHILYSPLPCCVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 696

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHLICKF+DGTKYEAACKWGI  +TAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA
Sbjct: 697 TKKVTHLICKFTDGTKYEAACKWGIQCITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 756

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLD 180
           G+CTVSQFPTQA  MIA+ES SQFPI+S +PRDQSAGTN+S+I  VEQIS TKKKRK  D
Sbjct: 757 GLCTVSQFPTQAAPMIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFD 816

Query: 181 EAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKS 240
           EA+QKR LF+GNSS+  DCNLNSTK+TTSKSSV+T+HVPDVA+AIEDLLEQTTKI DQKS
Sbjct: 817 EAIQKRPLFLGNSSTQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKS 876

Query: 241 PGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDG 300
           PGKTGCDKS FPPDCS+VGQ+HSE   IGG+SNQWSKRAERKED+SN T  DG+VGIYDG
Sbjct: 877 PGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDG 936

Query: 301 FSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 335
           FSETQT+SQVVGYEEDLSGRQML+D+VRTRSSMT
Sbjct: 937 FSETQTESQVVGYEEDLSGRQMLLDKVRTRSSMT 970

[Close]

BLAST of Cla023190 vs. NCBI nr
Match: gi|659086957|ref|XP_008444199.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-03
Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWG-I 86
           F  +   VS+    +R  +  L    G ++   LT+K THLIC   +G KY+ A  WG I
Sbjct: 187 FSGLNISVSRIPAGERKEMEKLILQNGGRYSADLTRKCTHLICDAPEGDKYKVARTWGRI 246

Query: 87  HSVTAEWIYECVRQSKIVSLDLY 109
           + VT +W  + + +   +S +LY
Sbjct: 247 NIVTRKWFDQSIARKACLSEELY 269

HSP 2 Score: 550.4 bits (1417), Expect = 2.1e-153
Identity = 263/312 (84.29%), Postives = 287/312 (91.99%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCLW TNGHILYSPLPCCVPLSGFE IRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL
Sbjct: 637 LEDGCLWATNGHILYSPLPCCVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 696

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHLICKF+DGTKYEAACKWGI  +TAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA
Sbjct: 697 TKKVTHLICKFTDGTKYEAACKWGIQCITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 756

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLD 180
           G+CTVSQFPTQA  MIA+ES SQFPI+S +PRDQSAGTN+S+I  VEQIS TKKKRK  D
Sbjct: 757 GLCTVSQFPTQAAPMIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFD 816

Query: 181 EAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKS 240
           EA+QKR LF+GNSS+  DCNLNSTK+TTSKSSV+T+HVPDVA+AIEDLLEQTTKI DQKS
Sbjct: 817 EAIQKRPLFLGNSSTQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKS 876

Query: 241 PGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDG 300
           PGKTGCDKS FPPDCS+VGQ+HSE   IGG+SNQWSKRAERKED+SN T  DG+VGIYDG
Sbjct: 877 PGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDG 936

Query: 301 FSETQTDSQVVG 313
           FSETQT+SQ +G
Sbjct: 937 FSETQTESQQIG 948

[Close]

BLAST of Cla023190 vs. NCBI nr
Match: gi|659086960|ref|XP_008444200.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo])

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-03
Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWG-I 86
           F  +   VS+    +R  +  L    G ++   LT+K THLIC   +G KY+ A  WG I
Sbjct: 187 FSGLNISVSRIPAGERKEMEKLILQNGGRYSADLTRKCTHLICDAPEGDKYKVARTWGRI 246

Query: 87  HSVTAEWIYECVRQSKIVSLDLY 109
           + VT +W  + + +   +S +LY
Sbjct: 247 NIVTRKWFDQSIARKACLSEELY 269

HSP 2 Score: 548.1 bits (1411), Expect = 1.0e-152
Identity = 262/310 (84.52%), Postives = 286/310 (92.26%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCLW TNGHILYSPLPCCVPLSGFE IRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL
Sbjct: 585 LEDGCLWATNGHILYSPLPCCVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 644

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHLICKF+DGTKYEAACKWGI  +TAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA
Sbjct: 645 TKKVTHLICKFTDGTKYEAACKWGIQCITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 704

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLD 180
           G+CTVSQFPTQA  MIA+ES SQFPI+S +PRDQSAGTN+S+I  VEQIS TKKKRK  D
Sbjct: 705 GLCTVSQFPTQAAPMIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFD 764

Query: 181 EAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKS 240
           EA+QKR LF+GNSS+  DCNLNSTK+TTSKSSV+T+HVPDVA+AIEDLLEQTTKI DQKS
Sbjct: 765 EAIQKRPLFLGNSSTQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKS 824

Query: 241 PGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDG 300
           PGKTGCDKS FPPDCS+VGQ+HSE   IGG+SNQWSKRAERKED+SN T  DG+VGIYDG
Sbjct: 825 PGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDG 884

Query: 301 FSETQTDSQV 311
           FSETQT+SQ+
Sbjct: 885 FSETQTESQL 894

[Close]

BLAST of Cla023190 vs. NCBI nr
Match: gi|659086964|ref|XP_008444202.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X5 [Cucumis melo])

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-03
Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWG-I 86
           F  +   VS+    +R  +  L    G ++   LT+K THLIC   +G KY+ A  WG I
Sbjct: 135 FSGLNISVSRIPAGERKEMEKLILQNGGRYSADLTRKCTHLICDAPEGDKYKVARTWGRI 194

Query: 87  HSVTAEWIYECVRQSKIVSLDLY 109
           + VT +W  + + +   +S +LY
Sbjct: 195 NIVTRKWFDQSIARKACLSEELY 217

HSP 2 Score: 548.1 bits (1411), Expect = 1.0e-152
Identity = 262/310 (84.52%), Postives = 286/310 (92.26%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCLW TNGHILYSPLPCCVPLSGFE IRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL
Sbjct: 637 LEDGCLWATNGHILYSPLPCCVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 696

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHLICKF+DGTKYEAACKWGI  +TAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA
Sbjct: 697 TKKVTHLICKFTDGTKYEAACKWGIQCITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 756

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLD 180
           G+CTVSQFPTQA  MIA+ES SQFPI+S +PRDQSAGTN+S+I  VEQIS TKKKRK  D
Sbjct: 757 GLCTVSQFPTQAAPMIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFD 816

Query: 181 EAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKS 240
           EA+QKR LF+GNSS+  DCNLNSTK+TTSKSSV+T+HVPDVA+AIEDLLEQTTKI DQKS
Sbjct: 817 EAIQKRPLFLGNSSTQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKS 876

Query: 241 PGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDG 300
           PGKTGCDKS FPPDCS+VGQ+HSE   IGG+SNQWSKRAERKED+SN T  DG+VGIYDG
Sbjct: 877 PGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDG 936

Query: 301 FSETQTDSQV 311
           FSETQT+SQ+
Sbjct: 937 FSETQTESQL 946

[Close]

BLAST of Cla023190 vs. NCBI nr
Match: gi|659086954|ref|XP_008444198.1| (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-03
Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 27  FEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWG-I 86
           F  +   VS+    +R  +  L    G ++   LT+K THLIC   +G KY+ A  WG I
Sbjct: 187 FSGLNISVSRIPAGERKEMEKLILQNGGRYSADLTRKCTHLICDAPEGDKYKVARTWGRI 246

Query: 87  HSVTAEWIYECVRQSKIVSLDLY 109
           + VT +W  + + +   +S +LY
Sbjct: 247 NIVTRKWFDQSIARKACLSEELY 269

HSP 2 Score: 547.7 bits (1410), Expect = 1.4e-152
Identity = 262/309 (84.79%), Postives = 285/309 (92.23%), Query Frame = 1


Query: 1   MKDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 60
           ++DGCLW TNGHILYSPLPCCVPLSGFE IRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL
Sbjct: 637 LEDGCLWATNGHILYSPLPCCVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL 696

Query: 61  TKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 120
           TKKVTHLICKF+DGTKYEAACKWGI  +TAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA
Sbjct: 697 TKKVTHLICKFTDGTKYEAACKWGIQCITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAA 756

Query: 121 GICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLD 180
           G+CTVSQFPTQA  MIA+ES SQFPI+S +PRDQSAGTN+S+I  VEQIS TKKKRK  D
Sbjct: 757 GLCTVSQFPTQAAPMIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFD 816

Query: 181 EAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKS 240
           EA+QKR LF+GNSS+  DCNLNSTK+TTSKSSV+T+HVPDVA+AIEDLLEQTTKI DQKS
Sbjct: 817 EAIQKRPLFLGNSSTQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKS 876

Query: 241 PGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDG 300
           PGKTGCDKS FPPDCS+VGQ+HSE   IGG+SNQWSKRAERKED+SN T  DG+VGIYDG
Sbjct: 877 PGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDG 936

Query: 301 FSETQTDSQ 310
           FSETQT+SQ
Sbjct: 937 FSETQTESQ 945

The following BLAST results are available for this feature:

BLAST of Cla023190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOB1A_XENLA	7.6e-10	31.69	DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A PE=1 SV=2	[more]
TOB1B_XENLA	6.4e-09	31.69	DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis GN=topbp1-B PE=2 SV=1	[more]
RAD4_SCHPO	4.6e-07	34.67	S-M checkpoint control protein rad4 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
TOPB1_HUMAN	2.3e-06	29.27	DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3	[more]

BLAST of Cla023190 vs. TrEMBL


Match Name	E-value	Identity	Description
F6H0I2_VITVI	3.9e-106	58.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g01810 PE=4 SV=...	[more]
U5GIX9_POPTR	8.7e-106	58.41	BRCT domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20500...	[more]
A0A061FPG8_THECC	1.6e-104	60.06	Topbp1, putative isoform 1 OS=Theobroma cacao GN=TCM_035208 PE=4 SV=1	[more]
A0A061FPG8_THECC	3.3e-04	31.33	Topbp1, putative isoform 1 OS=Theobroma cacao GN=TCM_035208 PE=4 SV=1	[more]
A0A061FGG9_THECC	3.3e-04	31.33	Topbp1, putative isoform 2 OS=Theobroma cacao GN=TCM_035208 PE=4 SV=1	[more]

BLAST of Cla023190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086957\|ref\|XP_008444199.1\|	3.7e-166	85.33	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo]	[more]
gi\|659086957\|ref\|XP_008444199.1\|	5.2e-03	32.53	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo]	[more]
gi\|659086960\|ref\|XP_008444200.1\|	5.2e-03	32.53	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo]	[more]
gi\|659086964\|ref\|XP_008444202.1\|	5.2e-03	32.53	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X5 [Cucumis melo]	[more]
gi\|659086954\|ref\|XP_008444198.1\|	5.2e-03	32.53	PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001357	BRCT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0033314	mitotic DNA replication checkpoint
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla023190	Cla023190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	GENE3D	G3DSA:3.40.50.10190		coord: 27..117 score: 2.4
IPR001357	BRCT domain	PFAM	PF12738	PTCB-BRCT	coord: 30..92 score: 3.1
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 24..100 score: 3.1
IPR001357	BRCT domain	PROFILE	PS50172	BRCT	coord: 27..110 score: 15
IPR001357	BRCT domain	unknown	SSF52113	BRCT domain	coord: 24..111 score: 2.36
None	No IPR available	PANTHER	PTHR13561	DNA REPLICATION REGULATOR DPB11-RELATED	coord: 1..333 score: 5.1
None	No IPR available	PANTHER	PTHR13561:SF20	MUTAGEN-SENSITIVE 101	coord: 1..333 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla023190	Cla97C11G221960	Watermelon (97103) v2	wmwmbB358
Cla023190	Csa4G360270	Cucumber (Chinese Long) v2	cuwmB354
Cla023190	MELO3C010509	Melon (DHL92) v3.5.1	mewmB544
Cla023190	ClCG11G015970	Watermelon (Charleston Gray)	wcgwmB103
Cla023190	CSPI04G17580	Wild cucumber (PI 183967)	cpiwmB360
Cla023190	CmaCh09G007700	Cucurbita maxima (Rimu)	cmawmB038
Cla023190	CmoCh09G007620	Cucurbita moschata (Rifu)	cmowmB030
Cla023190	Lsi04G024160	Bottle gourd (USVL1VR-Ls)	lsiwmB334
Cla023190	Cp4.1LG06g06060	Cucurbita pepo (Zucchini)	cpewmB776
Cla023190	CsGy4G016750	Cucumber (Gy14) v2	cgybwmB330
Cla023190	MELO3C010511.2	Melon (DHL92) v3.6.1	medwmB529
Cla023190	Carg00314	Silver-seed gourd	carwmB0672
Cla023190	Carg20087	Silver-seed gourd	carwmB1046
Cla023190	CsaV3_4G028030	Cucumber (Chinese Long) v3	cucwmB371
Cla023190	Bhi09G002273	Wax gourd	wgowmB637

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla023190	Cucumber (Chinese Long) v3	cucwmB370
Cla023190	Watermelon (97103) v2	wmwmbB383
Cla023190	Watermelon (97103) v1	wmwmB075
Cla023190	Cucurbita maxima (Rimu)	cmawmB288
Cla023190	Cucurbita maxima (Rimu)	cmawmB462
Cla023190	Cucurbita moschata (Rifu)	cmowmB279
Cla023190	Cucurbita moschata (Rifu)	cmowmB456
Cla023190	Wild cucumber (PI 183967)	cpiwmB277
Cla023190	Watermelon (Charleston Gray)	wcgwmB424
Cla023190	Cucumber (Chinese Long) v2	cuwmB352
Cla023190	Cucurbita pepo (Zucchini)	cpewmB193
Cla023190	Cucurbita pepo (Zucchini)	cpewmB581
Cla023190	Bottle gourd (USVL1VR-Ls)	lsiwmB495
Cla023190	Cucumber (Gy14) v2	cgybwmB329
Cla023190	Cucumber (Gy14) v2	cgybwmB500
Cla023190	Silver-seed gourd	carwmB0833