Carg00314 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00314
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dna topoisomerase 2-binding protein 1-a
Location	Cucurbita_argyrosperma_scaffold_001 : 1721627 .. 1722674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTGCTTCGACAAAGGTGTGTCCTTTTATTGGGATCAATGCCTTTTATGTTTAAATATTTGATTTCTTTTGCACTTGGGTTAATCCTATAAGGTACCAGATTTTCCCGCCTGATTGTTCCGTCATTGGTCTGGTGAATCGTTTCCTAGAACAAAAAAGATTGTACTTTCTTTGAGTAGTCATTTTATTTGCAAAATTCAATCATCCCGAATGCTATTCTTAAAACTAGCTTGCAAATAAAATGCAGTAGACTATTTTTCAAACTTGATATTAATCAATACTGTACCCTTTACGTGATTTTGGCATTATGAAAACTTTTCTGCTCTGTTTGGTTTTTAAAAATTTTGTTTGATTTTTCATTATTGCTCTATAATAAGTTTCATCTTTCTTAGGAAAATATTTCGCTAAAAATATTGGTTAAAAGATCATTTCACTAAAGAACTCAACCCTGTAAAGCTATACTGAAATCACTCTTAGACTAATAAGTACAAACACATTTCAGTTTTGTCTTTGTAACTCAGTTAATGAGACTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGTGTGTGCATGTGTTTTCTTTGTCATTTATACCTCTATTGCAATTATGTGTGATAAATATTTGAAAATTGTATCCCTCTCTGTCGACAAGATTTTGGAAGAACTGAATAGATTACAACTCATAAGATTTTAGAATCATCAATGAAGTTGAAATTGATACTAGGAACAAACTAATTACTTGGCTATTAGTTCCAGCCTGTTAACAGTTCAATGTTTGTAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAA

mRNA sequence

ATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTGCTTCGACAAAGTTAATGAGACTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAA

Coding sequence (CDS)

ATGGATAGAGCTTTAATTCCATTACTTCATTTCAATATATTGTTCTCTCGGATCCTTCTGTTCCACTTTCTTTTTAAGATTCATGATCGGAAGTCACCTGGAAAGACTTGCTTCGACAAAGTTAATGAGACTTTTATTTTGCATGATCTCAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAATGCAAATACTTATAGACAGAGTTCGAACCTGGAGTAGCATGACTTAA

Protein sequence

MDRALIPLLHFNILFSRILLFHFLFKIHDRKSPGKTCFDKVNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT

Homology

[Close]

BLAST of Carg00314 vs. NCBI nr
Match: XP_022976695.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 57/103 (55.34%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDKVNETFILHDL----------------------RAERKEDVRILIL 85
           KIHD+KSPGKT  DK   +  L D                       RAERKEDV     
Sbjct: 873 KIHDQKSPGKTGCDK---SIFLPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTT 932

Query: 86  GDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
           GDG  G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 933 GDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 972

[Close]

BLAST of Carg00314 vs. NCBI nr
Match: XP_022976696.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita maxima])

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 57/103 (55.34%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDKVNETFILHDL----------------------RAERKEDVRILIL 85
           KIHD+KSPGKT  DK   +  L D                       RAERKEDV     
Sbjct: 870 KIHDQKSPGKTGCDK---SIFLPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTT 929

Query: 86  GDGSGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
           GDG  G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 930 GDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 969

[Close]

BLAST of Carg00314 vs. NCBI nr
Match: XP_022936988.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 56/100 (56.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDG 85
           KIHD+KSPGKT  DK                   V  +      RAERKEDV     GDG
Sbjct: 870 KIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTTGDG 929

Query: 86  SGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
             G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 930 CAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 969

[Close]

BLAST of Carg00314 vs. NCBI nr
Match: XP_022936987.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 56/100 (56.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDG 85
           KIHD+KSPGKT  DK                   V  +      RAERKEDV     GDG
Sbjct: 873 KIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTTGDG 932

Query: 86  SGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
             G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 933 CAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 972

[Close]

BLAST of Carg00314 vs. NCBI nr
Match: XP_023535949.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 56/100 (56.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDK-------------------VNETFILHDLRAERKEDVRILILGDG 85
           KIHD+KSPGKT  DK                   V  +      RAERKEDV     GDG
Sbjct: 870 KIHDQKSPGKTGCDKSIFPPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTTGDG 929

Query: 86  SGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
             G Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 930 CAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 969

[Close]

BLAST of Carg00314 vs. TAIR10
Match: AT1G77320.1 (transcription coactivators)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-14
Identity = 46/95 (48.42%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 26  KIHDRKSPG----KTCFDKVNE---------TFILHDLRAERKEDVRILILGDGSGGIYG 85
           KI D+KSPG    KT F    +             H +    K D      GD +   YG
Sbjct: 878 KIQDQKSPGRILEKTHFSTSEQYNTGNHSVTGLSRHWINRVHKNDDMGSPPGDATTDTYG 937

Query: 86  GFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT 108
            F ETQTESQVVGYEEDLSG Q+LIDRVRT SS+T
Sbjct: 938 NFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSLT 972

[Close]

BLAST of Carg00314 vs. TrEMBL
Match: tr|A0A1S4DV59|A0A1S4DV59_CUCME (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16
Identity = 55/101 (54.46%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDKV-------------NETFILHDL------RAERKEDVRILILGDG 85
           KI D+KSPGKT  DK              +ET  +  +      RAERKEDV      DG
Sbjct: 870 KIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDG 929

Query: 86  SGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSMT 108
           + GIY GF ETQTESQVVGYEEDLSG Q+L+D+VRT SSMT
Sbjct: 930 TVGIYDGFSETQTESQVVGYEEDLSGRQMLLDKVRTRSSMT 970

[Close]

BLAST of Carg00314 vs. TrEMBL
Match: tr|A0A0B0N3F4|A0A0B0N3F4_GOSAR (DNA topoisomerase 2-binding 1 OS=Gossypium arboreum OX=29729 GN=F383_32625 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.4e-15
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 24  LFKIHDRKSPGKTCFDKVNETFILHDLRAERKEDVRILILGDGSGGIYGGFCETQTESQV 83
           LFKIHD+KSP +   D+     +  D  +    DV +       G +YGGF ETQTESQV
Sbjct: 702 LFKIHDQKSPERNGCDRSVSLNVRKDEISSHSRDVNV-------GSLYGGFSETQTESQV 761

Query: 84  VGYEEDLSGMQILIDRVRTWSSMT 108
           VGYEEDLSG Q+LIDRVRT SSMT
Sbjct: 762 VGYEEDLSGRQMLIDRVRTRSSMT 778

[Close]

BLAST of Carg00314 vs. TrEMBL
Match: tr|A0A2P5F185|A0A2P5F185_9ROSA (BRCT domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_125930 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 26  KIHDRKSPGKT----------CFDKVNETFILHDL---------RAERKEDVRILILGDG 85
           KIHD+KSPG+T          C   V +    H +         R  +K+DV     GDG
Sbjct: 604 KIHDQKSPGRTGCDESLFSSNCSTLVQDHSDTHSIVGLSKHWLNRTGKKDDV-YNSSGDG 663

Query: 86  SGGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
           + G+Y GF ETQT+SQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 664 NMGMYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSM 702

[Close]

BLAST of Carg00314 vs. TrEMBL
Match: tr|A0A061FPG8|A0A061FPG8_THECC (Topbp1, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_035208 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 48/99 (48.48%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 26  KIHDRKSPGKT--------------CFDKVNETFIL----HDLRAERKEDVRILILGDGS 85
           KIHD+KSP +               C D  +   ++    H L    K+D      GDG+
Sbjct: 880 KIHDQKSPERNGCDKSIFSSDRTGLCQDHTDSHSVIGLSRHWLNRTVKKDETCSYSGDGN 939

Query: 86  GGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
            G+Y GF ETQTESQVVGYEEDLSG Q+LIDRVRT SSM
Sbjct: 940 AGLYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSM 978

[Close]

BLAST of Carg00314 vs. TrEMBL
Match: tr|A0A2N9IUX5|A0A2N9IUX5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55713 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.1e-13
Identity = 51/99 (51.52%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 26  KIHDRKSPGKTCFDK---VNETFIL---------------HDLRAERKEDVRILILGDGS 85
           KIHD+ SPG+T  DK    ++  IL               H L    K D      G GS
Sbjct: 878 KIHDQNSPGRTGCDKNLFSSDYSILGQDRSDAHSVIGLSKHWLNRTGKNDDVCNTPGSGS 937

Query: 86  GGIYGGFCETQTESQVVGYEEDLSGMQILIDRVRTWSSM 107
            GIY GF ETQTESQVVGYEEDLSG Q+LIDRVRT SS+
Sbjct: 938 AGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSL 976

The following BLAST results are available for this feature:

BLAST of Carg00314 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976695.1	2.0e-16	55.34	DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima]	[more]
XP_022976696.1	2.0e-16	55.34	DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita maxima]	[more]
XP_022936988.1	3.4e-16	56.00	DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata]	[more]
XP_022936987.1	3.4e-16	56.00	DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata]	[more]
XP_023535949.1	3.4e-16	56.00	DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00314 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77320.1	8.5e-14	48.42	transcription coactivators	[more]

BLAST of Carg00314 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00314 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DV59\|A0A1S4DV59_CUCME	8.5e-16	54.46	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0B0N3F4\|A0A0B0N3F4_GOSAR	9.4e-15	55.95	DNA topoisomerase 2-binding 1 OS=Gossypium arboreum OX=29729 GN=F383_32625 PE=4 ...	[more]
tr\|A0A2P5F185\|A0A2P5F185_9ROSA	2.3e-13	50.00	BRCT domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_125930...	[more]
tr\|A0A061FPG8\|A0A061FPG8_THECC	2.3e-13	48.48	Topbp1, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_035208 PE=4 SV=1	[more]
tr\|A0A2N9IUX5\|A0A2N9IUX5_FAGSY	5.1e-13	51.52	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55713 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00314-RA	Carg00314-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00314	Cla023190	Watermelon (97103) v1	carwmB0672
Carg00314	CsaV3_4G028030	Cucumber (Chinese Long) v3	carcucB0701

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00314	Silver-seed gourd	carcarB574
Carg00314	Cucumber (Gy14) v2	carcgybB0663
Carg00314	Cucurbita maxima (Rimu)	carcmaB0932
Carg00314	Cucurbita maxima (Rimu)	carcmaB0947
Carg00314	Cucurbita moschata (Rifu)	carcmoB0906
Carg00314	Cucurbita moschata (Rifu)	carcmoB0922
Carg00314	Cucurbita pepo (Zucchini)	carcpeB0943
Carg00314	Cucurbita pepo (Zucchini)	carcpeB0947
Carg00314	Wild cucumber (PI 183967)	carcpiB0699
Carg00314	Cucumber (Chinese Long) v2	carcuB0688
Carg00314	Bottle gourd (USVL1VR-Ls)	carlsiB609
Carg00314	Melon (DHL92) v3.5.1	carmeB0673
Carg00314	Melon (DHL92) v3.6.1	carmedB0685
Carg00314	Watermelon (Charleston Gray)	carwcgB0647
Carg00314	Watermelon (97103) v2	carwmbB0692
Carg00314	Wax gourd	carwgoB0789