Cla022908 (gene) Watermelon (97103) v1

Overview
NameCla022908
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA polymerase epsilon subunit C (AHRD V1 *--* B6JX31_SCHJY); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone
LocationChr11 : 15491555 .. 15493316 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTGTAAGCAAACATTACAGATGATTCGGTAGTATTTAATGTTATAAGGTGTTCATTTAAGAAATATATGATTGCTAATGTTTCTTCAACATTAATACCAGCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTGTAAGAACATATTTTAACCGACTTTCTTTTTCCTGAAGTATTGTGACAGCCATGCATTCAAACTCGGAAAATTTACTTTTTTGGTTGTCTAGCCCCCATTTGGTAATCATTTTGTTGTTGGTTTTTGGTTTTTGAAAATTAAGCCTATTTTAGATTAACTTCTTACAATAGTTTGCATCTTTCTTAAATAAAGAGTTGAATTCTTGGCCAAATTCCAAATTCCAAATTCCAAAAACAAGTTTTTAAAAACTACTTTTTTTTAGTTTTCAAAACTTGACTTGATTTTTAAAAAATTGGTAAAAAGTAAATAGAAAATCAAGACTTTGGAGGGGAAGGAGTGTTTATAGGCTTAATTTTCAAAAACCAAAAACCAAAAACCAAAAACCAAAAACCAAAAGCTAACAAAACAGGGCCTTAGATTTTTGTTTGGAATTTACCTTTAGCATCTAATTGGTTGATTCCTTGGGTCACCTACAACCTTAATTGGTATCAAATGCATATTCTGTTTCCCCAAACTTGATTGTTATGTTTTGGTTATCAATTTGTCTTACATTGTTTCTCGACTTTTATTACAGAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGTATAATTTACTTATTTTCCTACTACTATTTTGTCGAGACCCATAGATAATTAAACATACTTAATATCTGATCAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGGTAATTATTCTTTCCTCCTAACGAATCAACTCAGTATTTGCTAAACTGGATTTTCTTGGACATAGACAGCAAACCAAGACTTGAGAATTAGTAATTGTCATTCTTGTGTGGTGTCATCAAATACATAATGAATTCATTGGCCTGGAAAGATGAATCTAAAGATAAATAACACTTAGAATGAGAAAGTGATTTCTATTCCTTTTTCTCCCCCAGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAACCTAACCCTGACATCGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGAGAAGCCAATCAAGCTATCCAAAACTTTGATCTTAATGTGGATGTCATCACCAGCGAAGACTCCAAGAGTGTACCACCACCACCAGCAGTGTCAGATGCGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA

mRNA sequence

ATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAACCTAACCCTGACATCGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGAGAAGCCAATCAAGCTATCCAAAACTTTGATCTTAATGTGGATGTCATCACCAGCGAAGACTCCAAGAGTGTACCACCACCACCAGCAGTGTCAGATGCGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA

Coding sequence (CDS)

ATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAACCTAACCCTGACATCGACCCTTGCACGTCTATAGAGAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGAGAAGCCAATCAAGCTATCCAAAACTTTGATCTTAATGTGGATGTCATCACCAGCGAAGACTCCAAGAGTGTACCACCACCACCAGCAGTGTCAGATGCGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA

Protein sequence

MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE
Homology
[Close]
BLAST of Cla022908 vs. Swiss-Prot
Match: NC2A_HUMAN (Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 65/178 (36.52%), Postives = 87/178 (48.88%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM + HLK C++    F
Sbjct: 21  MQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQF 80

Query: 61  DFLRDIVSRVPD-YGHG---HSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGR 120
           DFL+D+V+ VPD  G G   H DG    R+ RKP                     GS GR
Sbjct: 81  DFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKP---------------------GSGGR 140

Query: 121 GRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDV-HMEHHVEPSETP 174
             G G G  + +  + +  D+ Q +   D  T  E     P P   H   H +   TP
Sbjct: 141 KNG-GMGT-KSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTP 175

[Close]
BLAST of Cla022908 vs. Swiss-Prot
Match: NC2A_MOUSE (Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-19
Identity = 65/178 (36.52%), Postives = 88/178 (49.44%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM + HLK C++    F
Sbjct: 21  MQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQF 80

Query: 61  DFLRDIVSRVPD-YGHG---HSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGR 120
           DFL+D+V+ VPD  G G   H DG    R+ RKP                     GS+GR
Sbjct: 81  DFLKDLVASVPDMQGDGEDNHVDGDKGPRRGRKP---------------------GSSGR 140

Query: 121 GRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDV-HMEHHVEPSETP 174
             G G G  +G+  + +  D+ Q +   D  T  E       P   H   H +   TP
Sbjct: 141 KNG-GTG-SKGKDKKLSGTDSEQEDESEDTDTDGEEETPQLPPQASHPPAHFQSPPTP 175

[Close]
BLAST of Cla022908 vs. Swiss-Prot
Match: NC2A_RAT (Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-19
Identity = 73/234 (31.20%), Postives = 106/234 (45.30%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM + HLK C++    F
Sbjct: 21  MQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQF 80

Query: 61  DFLRDIVSRVPD-YGHG---HSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGR 120
           DFL+D+V+ VPD  G G   H+DG    R+ RKP                     GS+GR
Sbjct: 81  DFLKDLVASVPDMQGDGEDNHTDGDKGPRRGRKP---------------------GSSGR 140

Query: 121 GRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDVHMEHHVEPSETPKEV 180
             G G G  + +  + +  D+ Q +   D  T  E                   ETP+  
Sbjct: 141 KNG-GTG-SKSKDKKLSGTDSEQEDESEDTDTDGE------------------EETPQAP 200

Query: 181 GEANQAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEF 231
            +A+    +F           S   P  P  S  P+ PA P  +  E +  +++
Sbjct: 201 PQASHPPAHF----------QSPPTPFMPFTSPLPLPPAPPGPSAPEAEDEEDY 203

[Close]
BLAST of Cla022908 vs. Swiss-Prot
Match: NC2A_BOVIN (Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-18
Identity = 72/234 (30.77%), Postives = 108/234 (46.15%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQ DE++GK+A AVPV++S+ALELFL+ L  +  ++T  R AKTM + HLK C++    F
Sbjct: 21  MQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQF 80

Query: 61  DFLRDIVSRVPD-YGHG---HSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGR 120
           DFL+D+V+ VPD  G G   H DG    R+ RK                      GS+GR
Sbjct: 81  DFLKDLVASVPDMQGDGEDNHMDGDKGPRRGRK---------------------SGSSGR 140

Query: 121 GRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDVHMEHHVEPSETPKEV 180
             G G G  +G+  + +  D+ Q           E+ +++ + D          ETP+  
Sbjct: 141 KNG-GMG-SKGKDKKLSGTDSEQ-----------EDESEDTDSD-------GEEETPQVP 200

Query: 181 GEANQAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEF 231
            +A+    +F           S   P  P  S  PV PA P  +  + +  +++
Sbjct: 201 PQASHPPAHF----------QSPPTPFMPFTSTLPVPPAPPGASAPDAEEEEDY 203

[Close]
BLAST of Cla022908 vs. Swiss-Prot
Match: NC2A_DICDI (Dr1-associated corepressor homolog OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQ DE+VGKIA A P+L+S+ LELF+ DL  +T +IT  +  K ++  HLK C++  S F
Sbjct: 18  MQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHLKECIKQESTF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHG 113
           DFL +IV R+PD           + KR +P   EG D  E ++ +  +M  G
Sbjct: 78  DFLTEIVDRIPD---------DKNEKRGRPKKTEGEDGGEEEEEEEEEMDMG 120

[Close]
BLAST of Cla022908 vs. TrEMBL
Match: A0A0A0KPQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583350 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 3.0e-141
Identity = 249/267 (93.26%), Postives = 256/267 (95.88%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGR 120
           DFLRDIV RVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSH STGRGRGR
Sbjct: 78  DFLRDIVGRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHVSTGRGRGR 137

Query: 121 GRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEAN 180
           GRGRGRGRPAR+AERDN+QPNPD+DPCTSIENRNKNPNPDVHMEHHVEPS+TPKEV EAN
Sbjct: 138 GRGRGRGRPARSAERDNYQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSDTPKEVSEAN 197

Query: 181 QAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAP-TTTESETKTADEFPAWPLSDVD 240
           QAIQNFDLN DV T+EDSK+V P  AVSDAP+EPAAP TTTESETK ADEFPAWPLSDVD
Sbjct: 198 QAIQNFDLNADVSTNEDSKTV-PAAAVSDAPIEPAAPTTTTESETKAADEFPAWPLSDVD 257

Query: 241 KMAIDPLQYAHLSSRVDEEEEDYDEEE 267
           KMAIDPLQY HLSSRVDEEEEDYDEEE
Sbjct: 258 KMAIDPLQYTHLSSRVDEEEEDYDEEE 283

[Close]
BLAST of Cla022908 vs. TrEMBL
Match: M5XLH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008839mg PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.2e-83
Identity = 177/300 (59.00%), Postives = 210/300 (70.00%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMN++HLKHCVQSY+VF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDR---KRRKPLGDEGNDFD-ELKKSKMHDMSHG-STG 120
           DFLRDIVSRVPDYGHGHSD A +DR   KRRKP GDE  D D ELK+SKM +++HG S+G
Sbjct: 78  DFLRDIVSRVPDYGHGHSDAAGEDRAISKRRKPPGDECIDSDEELKRSKMLEVNHGSSSG 137

Query: 121 RGRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNK-NPNPDVHMEHHVEPSETPK 180
           RGRGRGRGRGRGR  R +ER+      + +PCTS+++  K NPNP + ++   E  E  K
Sbjct: 138 RGRGRGRGRGRGR-GRASERETLHHETESEPCTSLQHATKPNPNPGMVVDDASESKEEMK 197

Query: 181 E----VGEANQAIQNFDLNVDVITSEDSK-----------------------SVPPPPAV 240
           E      E++ A++NFDLN DVI +ED+K                       +     A 
Sbjct: 198 ENAVIPDESDPAVRNFDLNADVIENEDTKAAATAAQAATAAQASSTATQAAATASQAAAT 257

Query: 241 SDAPVEPAAPTTTESETKTA--DEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
           +      AAPT++   T     +E+P W LSDVDKMAIDPLQ AHLS R+DE+EEDYDEE
Sbjct: 258 ASQAAATAAPTSSAGPTSEIKHEEYPGWSLSDVDKMAIDPLQLAHLSGRIDEDEEDYDEE 316

[Close]
BLAST of Cla022908 vs. TrEMBL
Match: B9GXA0_POPTR (Transcription factor family protein OS=Populus trichocarpa GN=POPTR_0003s19130g PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.1e-82
Identity = 172/284 (60.56%), Postives = 208/284 (73.24%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRT+EITLQRGAKTM++LHLKHCVQSY+VF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTHEITLQRGAKTMSALHLKHCVQSYNVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDR--KRRKPLGDEGNDFD-ELKKSKMHDMSH-GSTGR 120
           DFLR+IVSRVPDY HGHSD   D R  ++RKP GDE ND D ELK+S+MH+MSH GS+GR
Sbjct: 78  DFLREIVSRVPDYSHGHSDSTGDHRPLQKRKPTGDECNDSDEELKRSRMHEMSHAGSSGR 137

Query: 121 GRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNK-NPNPDVHMEHHVEPSETPKE 180
           GRGRGRGRGRGR AR  ER++   + + + CT+++   K N NP V M++  E  E+ KE
Sbjct: 138 GRGRGRGRGRGRGARNIERESSSRDLEPESCTTVQQSIKNNTNPGVVMDNGSESKESVKE 197

Query: 181 ---VGEA-NQAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAPTTTESETKTA---- 240
              V +A NQ  +NFDLN +V  SED+K+   P A + A       TTT +   ++    
Sbjct: 198 NNRVSDATNQPERNFDLNAEVNDSEDAKAAAAPAAAAPAAAATTTTTTTTTSAPSSSVEP 257

Query: 241 ------DEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
                 +E+P W LS++DKM IDPLQ A LS R+DEEEEDYDEE
Sbjct: 258 AAETNHEEYPGWSLSEMDKMVIDPLQLAQLSKRLDEEEEDYDEE 301

[Close]
BLAST of Cla022908 vs. TrEMBL
Match: A0A061FR83_THECC (Nuclear factor Y isoform 1 OS=Theobroma cacao GN=TCM_044728 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.1e-82
Identity = 173/280 (61.79%), Postives = 207/280 (73.93%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTM+SLHLKHCVQSY+VF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDR---KRRKPLGDEGNDFD-ELKKSKMHDMSH-GSTG 120
           DFLRDIVSRVPDYGHGHSD   DDR   KRRK  GDEGND D E K+S+MHD+ H G++G
Sbjct: 78  DFLRDIVSRVPDYGHGHSDAGADDRTISKRRKAAGDEGNDSDEESKRSRMHDVGHAGTSG 137

Query: 121 RGRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKN-PNPDVHMEHHVEPSETPK 180
           RGRGRGRGRGRGR AR  ERD+ +   + +PC  +++ NK+   P + ++   E  E  K
Sbjct: 138 RGRGRGRGRGRGRGARNVERDSHR-ELEPEPCQPLQHSNKSLSTPGMVIDDGSESKELMK 197

Query: 181 E--VGE-ANQAIQNFDLNVDVITSEDSK-----SVPPPPAVSDAPVEPAAPTTTESETKT 240
           E  +GE ANQA++NFDLN +V  + D+K     S       +      A P++ E  T+T
Sbjct: 198 ENTIGEDANQAVRNFDLNAEVDENVDTKASAGASAAAATTATATAAAAAQPSSAEPTTET 257

Query: 241 A-DEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
             +E+P W LS++DKMAIDPLQ A L  R+DE+EEDYDEE
Sbjct: 258 KHEEYPGWSLSEMDKMAIDPLQLAQLGRRLDEDEEDYDEE 296

[Close]
BLAST of Cla022908 vs. TrEMBL
Match: B9GLW1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07050g PE=4 SV=2)

HSP 1 Score: 310.5 bits (794), Expect = 2.0e-81
Identity = 177/294 (60.20%), Postives = 209/294 (71.09%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSY+VF
Sbjct: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVF 60

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDR--KRRKPLGDEGNDFD-ELKKSKMHDMSH-GSTGR 120
           DFLR+IVS+VPDY HGHSD A D R  ++RKP  DE ND D ELK+S+MH+ SH GS+GR
Sbjct: 61  DFLREIVSKVPDYSHGHSDAAADHRPLQKRKPTVDECNDSDEELKRSRMHETSHAGSSGR 120

Query: 121 GRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSI-ENRNKNPNPDVHMEHHVEPSETPKE 180
           GRGRGRGRGRGR AR  ER+    + + +  T+I ++   N NP+V M++  E  E+  E
Sbjct: 121 GRGRGRGRGRGRGARNIERETSSRDLESESSTTIPQSVKNNSNPEVVMDNGSESKESVME 180

Query: 181 ----VGEANQAIQNFDLNVDVITSEDSKSVPPP-------------PAVSDAPVEPAAPT 240
                  A+QA +NFDLN +V  SED+K+   P             PA + A   PAA T
Sbjct: 181 NNIPSDAASQAERNFDLNAEVNDSEDAKAAAAPAAATTSATAAAAAPAAATAAAAPAAAT 240

Query: 241 TT------ESETKT-ADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
            T      E   +T  +E+P W LS++DKMAIDPLQ A LS+RVDEEEEDYDEE
Sbjct: 241 ATAPSLSAEPAAETNHEEYPGWSLSEMDKMAIDPLQLAQLSTRVDEEEEDYDEE 294

[Close]
BLAST of Cla022908 vs. NCBI nr
Match: gi|659090303|ref|XP_008445943.1| (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 510.8 bits (1314), Expect = 1.5e-141
Identity = 247/266 (92.86%), Postives = 254/266 (95.49%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGR 120
           DFLRDIV RVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGR
Sbjct: 78  DFLRDIVGRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGR 137

Query: 121 GRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEAN 180
           GRGRGRGRPAR+AERDN+QPNPD+DPCTSIENRNKNPNPDVHMEHHVEP +TPKEV EAN
Sbjct: 138 GRGRGRGRPARSAERDNYQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPGDTPKEVSEAN 197

Query: 181 QAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEFPAWPLSDVDK 240
           QAIQNFDLN DV T+EDSK+V P  AVSDAP+EPAAPTTTESETK  DEF AWPLSDVDK
Sbjct: 198 QAIQNFDLNADVSTNEDSKTV-PAAAVSDAPIEPAAPTTTESETKAVDEFHAWPLSDVDK 257

Query: 241 MAIDPLQYAHLSSRVDEEEEDYDEEE 267
           MAIDPLQY HLSSRVDEEEEDYDEEE
Sbjct: 258 MAIDPLQYTHLSSRVDEEEEDYDEEE 282

[Close]
BLAST of Cla022908 vs. NCBI nr
Match: gi|449458702|ref|XP_004147086.1| (PREDICTED: dr1-associated corepressor [Cucumis sativus])

HSP 1 Score: 509.2 bits (1310), Expect = 4.3e-141
Identity = 249/267 (93.26%), Postives = 256/267 (95.88%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGR 120
           DFLRDIV RVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSH STGRGRGR
Sbjct: 78  DFLRDIVGRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHVSTGRGRGR 137

Query: 121 GRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEAN 180
           GRGRGRGRPAR+AERDN+QPNPD+DPCTSIENRNKNPNPDVHMEHHVEPS+TPKEV EAN
Sbjct: 138 GRGRGRGRPARSAERDNYQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSDTPKEVSEAN 197

Query: 181 QAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAP-TTTESETKTADEFPAWPLSDVD 240
           QAIQNFDLN DV T+EDSK+V P  AVSDAP+EPAAP TTTESETK ADEFPAWPLSDVD
Sbjct: 198 QAIQNFDLNADVSTNEDSKTV-PAAAVSDAPIEPAAPTTTTESETKAADEFPAWPLSDVD 257

Query: 241 KMAIDPLQYAHLSSRVDEEEEDYDEEE 267
           KMAIDPLQY HLSSRVDEEEEDYDEEE
Sbjct: 258 KMAIDPLQYTHLSSRVDEEEEDYDEEE 283

[Close]
BLAST of Cla022908 vs. NCBI nr
Match: gi|645251216|ref|XP_008231577.1| (PREDICTED: dr1-associated corepressor homolog [Prunus mume])

HSP 1 Score: 320.9 bits (821), Expect = 2.2e-84
Identity = 178/293 (60.75%), Postives = 210/293 (71.67%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMN++HLKHCVQSY+VF
Sbjct: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVF 60

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDR---KRRKPLGDEGNDFD-ELKKSKMHDMSHG-STG 120
           DFLRDIVSRVPDYGHGHSD A +DR   KRRKP GDE  D D ELK+SKM +++HG S+G
Sbjct: 61  DFLRDIVSRVPDYGHGHSDAAGEDRAISKRRKPPGDECIDSDEELKRSKMLEVNHGSSSG 120

Query: 121 RGRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNK-NPNPDVHMEHHVEPSETPK 180
           RGRGRGRGRGRGR  R +ER+      + +PCTS+++  K NPNP + ++   E  E  K
Sbjct: 121 RGRGRGRGRGRGR-GRASERETLHHETESEPCTSLQHTTKPNPNPGMVVDDASESKEEMK 180

Query: 181 E----VGEANQAIQNFDLNVDVITSEDSK----------------SVPPPPAVSDAPVEP 240
           E      EA+ A++NFDLN DVI +ED+K                +     A +      
Sbjct: 181 ENAVIPDEADPAVRNFDLNADVIENEDTKAAVTAAQAATAAQASSTAAQAAATASQAAAT 240

Query: 241 AAPTTTESETKTA--DEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
           AAPT++   T     +E+P W LSDVDKMAIDPLQ AHLS R+DE+EEDYDEE
Sbjct: 241 AAPTSSAGPTSEIKHEEYPGWSLSDVDKMAIDPLQLAHLSGRIDEDEEDYDEE 292

[Close]
BLAST of Cla022908 vs. NCBI nr
Match: gi|470143080|ref|XP_004307213.1| (PREDICTED: dr1-associated corepressor [Fragaria vesca subsp. vesca])

HSP 1 Score: 318.2 bits (814), Expect = 1.4e-83
Identity = 182/277 (65.70%), Postives = 210/277 (75.81%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNS+HLKHCVQSY+VF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGA--VDDR---KRRKPLGDEGNDFD-ELKKSKMHDMSHG-S 120
           DFLR+IVSRVPDYGHGHSD A   DDR   KRRKP GDE  D D ELK+SKM ++SHG S
Sbjct: 78  DFLREIVSRVPDYGHGHSDAAASADDRAITKRRKPPGDECIDSDEELKRSKMLEVSHGSS 137

Query: 121 TGRGRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNK-NPNPDVHMEHHVEPSET 180
           +GRGRGRGRGRGRGR ART ER+      + +PCTS++  +K N NP + ++   E  + 
Sbjct: 138 SGRGRGRGRGRGRGRGARTTEREPVHHETESEPCTSLQQSSKLNVNPAMVVDDVSESKDL 197

Query: 181 PKE-VG---EANQAIQNFDLNVDVITSEDSKSVPPPPAVSDAPVEPAAPTTTESETKTAD 240
            KE VG   E++  ++NFDLN DV   ED+K+     A + A    AAPT   SETK  +
Sbjct: 198 LKENVGVPDESDPTVRNFDLNADVHEKEDTKA-----AAAAAQASSAAPT---SETK-HE 257

Query: 241 EFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
           E+P W LSDVDKMAIDPLQ A LS R+DE+EEDYDEE
Sbjct: 258 EYPGWSLSDVDKMAIDPLQLAQLSKRLDEDEEDYDEE 285

[Close]
BLAST of Cla022908 vs. NCBI nr
Match: gi|596013213|ref|XP_007218701.1| (hypothetical protein PRUPE_ppa008839mg [Prunus persica])

HSP 1 Score: 317.0 bits (811), Expect = 3.1e-83
Identity = 177/300 (59.00%), Postives = 210/300 (70.00%), Query Frame = 1 

Query: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVF 60
           MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMN++HLKHCVQSY+VF
Sbjct: 18  MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVF 77

Query: 61  DFLRDIVSRVPDYGHGHSDGAVDDR---KRRKPLGDEGNDFD-ELKKSKMHDMSHG-STG 120
           DFLRDIVSRVPDYGHGHSD A +DR   KRRKP GDE  D D ELK+SKM +++HG S+G
Sbjct: 78  DFLRDIVSRVPDYGHGHSDAAGEDRAISKRRKPPGDECIDSDEELKRSKMLEVNHGSSSG 137

Query: 121 RGRGRGRGRGRGRPARTAERDNFQPNPDIDPCTSIENRNK-NPNPDVHMEHHVEPSETPK 180
           RGRGRGRGRGRGR  R +ER+      + +PCTS+++  K NPNP + ++   E  E  K
Sbjct: 138 RGRGRGRGRGRGR-GRASERETLHHETESEPCTSLQHATKPNPNPGMVVDDASESKEEMK 197

Query: 181 E----VGEANQAIQNFDLNVDVITSEDSK-----------------------SVPPPPAV 240
           E      E++ A++NFDLN DVI +ED+K                       +     A 
Sbjct: 198 ENAVIPDESDPAVRNFDLNADVIENEDTKAAATAAQAATAAQASSTATQAAATASQAAAT 257

Query: 241 SDAPVEPAAPTTTESETKTA--DEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEE 266
           +      AAPT++   T     +E+P W LSDVDKMAIDPLQ AHLS R+DE+EEDYDEE
Sbjct: 258 ASQAAATAAPTSSAGPTSEIKHEEYPGWSLSDVDKMAIDPLQLAHLSGRIDEDEEDYDEE 316

The following BLAST results are available for this feature:
BLAST of Cla022908 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NC2A_HUMAN1.1e-1936.52Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3[more]
NC2A_MOUSE1.9e-1936.52Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3[more]
NC2A_RAT1.9e-1931.20Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1[more]
NC2A_BOVIN1.6e-1830.77Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1[more]
NC2A_DICDI1.3e-1541.07Dr1-associated corepressor homolog OS=Dictyostelium discoideum GN=drap1 PE=3 SV=... [more]
BLAST of Cla022908 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPQ2_CUCSA3.0e-14193.26Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583350 PE=4 SV=1[more]
M5XLH5_PRUPE2.2e-8359.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008839mg PE=4 SV=1[more]
B9GXA0_POPTR1.1e-8260.56Transcription factor family protein OS=Populus trichocarpa GN=POPTR_0003s19130g ... [more]
A0A061FR83_THECC1.1e-8261.79Nuclear factor Y isoform 1 OS=Theobroma cacao GN=TCM_044728 PE=4 SV=1[more]
B9GLW1_POPTR2.0e-8160.20Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07050g PE=4 SV=2[more]
BLAST of Cla022908 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090303|ref|XP_008445943.1|1.5e-14192.86PREDICTED: dr1-associated corepressor [Cucumis melo][more]
gi|449458702|ref|XP_004147086.1|4.3e-14193.26PREDICTED: dr1-associated corepressor [Cucumis sativus][more]
gi|645251216|ref|XP_008231577.1|2.2e-8460.75PREDICTED: dr1-associated corepressor homolog [Prunus mume][more]
gi|470143080|ref|XP_004307213.1|1.4e-8365.70PREDICTED: dr1-associated corepressor [Fragaria vesca subsp. vesca][more]
gi|596013213|ref|XP_007218701.1|3.1e-8359.00hypothetical protein PRUPE_ppa008839mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003712 transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022908Cla022908.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 1..54
score: 2.6
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 1..69
score: 1.3
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 1..70
score: 1.39
NoneNo IPR availableunknownCoilCoilcoord: 248..266
scor
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 1..247
score: 6.9
NoneNo IPR availablePANTHERPTHR10252:SF40SUBFAMILY NOT NAMEDcoord: 1..247
score: 6.9