Cla022744 (gene) Watermelon (97103) v1

NameCla022744
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 26127754 .. 26128509 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAAGAGTTGTTTACCCTATTTAGGGTCACCCGATTGTGTTGACGACGACAGCAACAACAACAACCATGTCTCGAAAAGCAAAGAATTGGAGGAAGCTGGGCATGGCGGCGGCTGCGGCGGCAATAATCTTAATCACAACAATTTCCCTTCTTCGTTCGAGTCCTCCAAATCCAAGCACATTTTCGTGAGAGTGGTCCACGCCGGTGGCAAGGTAGACCATTATCCCAATGCGGTTCTGGCCGCTAAACTCCTGGAAAGCCTTCCCGGAAAATGGCTGGCACGCCCTGAAGTATTCAAGCACCCACACCAGTCTATCATCTACCCTGAAGACTATCTTCTTCCTGGCCATAAATATTTCGTAATTCCTCTCTCCACCATTGACAAGCTCATGAGAAAGCACAACAACCTCAGATTCGTCATTCCCCCAAATAATATTAATGGGTTCAACCAACAAATGGACGTGAGTTCCGAAGCTAATATAGACCATGACGTCCATACTCTAGAACCCATGGACGACCACGATTTTTCCCTCTGTTCTGCAAGAGATTTTTATGCCAACCAACACAAGCACTCCACCTCCTCCACAATTAATGGATCTTGCGGCGGTTCGAGGAAGCCAAGGATTTTGCTGCCAAACCCAAACCCAAAGCCGAAGCCGAAGCCAAAGCCAAAGCCAAAGCCAAAGCCCAAGCCCTGCTCTGCCTATTCCTGGGAGCCTGGCCTCACTTCTATACAAGAGCTCTCTCCATGA

mRNA sequence

ATGCTTAAGAGTTGTTTACCCTATTTAGGGTCACCCGATTGTGTTGACGACGACAGCAACAACAACAACCATGTCTCGAAAAGCAAAGAATTGGAGGAAGCTGGGCATGGCGGCGGCTGCGGCGGCAATAATCTTAATCACAACAATTTCCCTTCTTCGTTCGAGTCCTCCAAATCCAAGCACATTTTCGTGAGAGTGGTCCACGCCGGTGGCAAGGTAGACCATTATCCCAATGCGGTTCTGGCCGCTAAACTCCTGGAAAGCCTTCCCGGAAAATGGCTGGCACGCCCTGAAGTATTCAAGCACCCACACCAGTCTATCATCTACCCTGAAGACTATCTTCTTCCTGGCCATAAATATTTCGTAATTCCTCTCTCCACCATTGACAAGCTCATGAGAAAGCACAACAACCTCAGATTCGTCATTCCCCCAAATAATATTAATGGGTTCAACCAACAAATGGACGTGAGTTCCGAAGCTAATATAGACCATGACGTCCATACTCTAGAACCCATGGACGACCACGATTTTTCCCTCTGTTCTGCAAGAGATTTTTATGCCAACCAACACAAGCACTCCACCTCCTCCACAATTAATGGATCTTGCGGCGGTTCGAGGAAGCCAAGGATTTTGCTGCCAAACCCAAACCCAAAGCCGAAGCCGAAGCCAAAGCCAAAGCCAAAGCCAAAGCCCAAGCCCTGCTCTGCCTATTCCTGGGAGCCTGGCCTCACTTCTATACAAGAGCTCTCTCCATGA

Coding sequence (CDS)

ATGCTTAAGAGTTGTTTACCCTATTTAGGGTCACCCGATTGTGTTGACGACGACAGCAACAACAACAACCATGTCTCGAAAAGCAAAGAATTGGAGGAAGCTGGGCATGGCGGCGGCTGCGGCGGCAATAATCTTAATCACAACAATTTCCCTTCTTCGTTCGAGTCCTCCAAATCCAAGCACATTTTCGTGAGAGTGGTCCACGCCGGTGGCAAGGTAGACCATTATCCCAATGCGGTTCTGGCCGCTAAACTCCTGGAAAGCCTTCCCGGAAAATGGCTGGCACGCCCTGAAGTATTCAAGCACCCACACCAGTCTATCATCTACCCTGAAGACTATCTTCTTCCTGGCCATAAATATTTCGTAATTCCTCTCTCCACCATTGACAAGCTCATGAGAAAGCACAACAACCTCAGATTCGTCATTCCCCCAAATAATATTAATGGGTTCAACCAACAAATGGACGTGAGTTCCGAAGCTAATATAGACCATGACGTCCATACTCTAGAACCCATGGACGACCACGATTTTTCCCTCTGTTCTGCAAGAGATTTTTATGCCAACCAACACAAGCACTCCACCTCCTCCACAATTAATGGATCTTGCGGCGGTTCGAGGAAGCCAAGGATTTTGCTGCCAAACCCAAACCCAAAGCCGAAGCCGAAGCCAAAGCCAAAGCCAAAGCCAAAGCCCAAGCCCTGCTCTGCCTATTCCTGGGAGCCTGGCCTCACTTCTATACAAGAGCTCTCTCCATGA

Protein sequence

MLKSCLPYLGSPDCVDDDSNNNNHVSKSKELEEAGHGGGCGGNNLNHNNFPSSFESSKSKHIFVRVVHAGGKVDHYPNAVLAAKLLESLPGKWLARPEVFKHPHQSIIYPEDYLLPGHKYFVIPLSTIDKLMRKHNNLRFVIPPNNINGFNQQMDVSSEANIDHDVHTLEPMDDHDFSLCSARDFYANQHKHSTSSTINGSCGGSRKPRILLPNPNPKPKPKPKPKPKPKPKPCSAYSWEPGLTSIQELSP
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025322DUF4228_plant
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022744Cla022744.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 62..248
score: 3.5
NoneNo IPR availablePANTHERPTHR33052FAMILY NOT NAMEDcoord: 64..135
score: 5.8
NoneNo IPR availablePANTHERPTHR33052:SF29SUBFAMILY NOT NAMEDcoord: 64..135
score: 5.8

The following gene(s) are paralogous to this gene:

None