Cla022727 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022727
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 26033967 .. 26034293 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGCCAATTTGTTGTCTTTGCTCTCGTCCTCTTCGCCGTCGTTGGCTTCGCCTGCGCAGCGTCACCCGCCGAAGCTCCCAAGGGCTCTGCTGATAACGCCGACGTCGGAGCTCAATTGGCTCCCGGCGCCGAAAACGAGATCGGAAACACCGAGGGGGCTGATGCTCCCGCAGGAAGCGACGACGTGGTTGAAGCCCCTATTGGCGGACCTGGTGCTGCAGCAGGTGGATTTGTCCCTGCTGAAGCTCCTAACAGTGGTGCCTCTGCCGTGGAATTTTCTGCTGTCGCTGCCGTCGCCGCGGTTGCAGGATTTTTCTTCTAA

mRNA sequence

ATGGCACGCCAATTTGTTGTCTTTGCTCTCGTCCTCTTCGCCGTCGTTGGCTTCGCCTGCGCAGCGTCACCCGCCGAAGCTCCCAAGGGCTCTGCTGATAACGCCGACGTCGGAGCTCAATTGGCTCCCGGCGCCGAAAACGAGATCGGAAACACCGAGGGGGCTGATGCTCCCGCAGGAAGCGACGACGTGGTTGAAGCCCCTATTGGCGGACCTGGTGCTGCAGCAGGTGGATTTGTCCCTGCTGAAGCTCCTAACAGTGGTGCCTCTGCCGTGGAATTTTCTGCTGTCGCTGCCGTCGCCGCGGTTGCAGGATTTTTCTTCTAA

Coding sequence (CDS)

ATGGCACGCCAATTTGTTGTCTTTGCTCTCGTCCTCTTCGCCGTCGTTGGCTTCGCCTGCGCAGCGTCACCCGCCGAAGCTCCCAAGGGCTCTGCTGATAACGCCGACGTCGGAGCTCAATTGGCTCCCGGCGCCGAAAACGAGATCGGAAACACCGAGGGGGCTGATGCTCCCGCAGGAAGCGACGACGTGGTTGAAGCCCCTATTGGCGGACCTGGTGCTGCAGCAGGTGGATTTGTCCCTGCTGAAGCTCCTAACAGTGGTGCCTCTGCCGTGGAATTTTCTGCTGTCGCTGCCGTCGCCGCGGTTGCAGGATTTTTCTTCTAA

Protein sequence

MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAGSDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF

Homology

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BLAST of Cla022727 vs. TrEMBL
Match: A0A0A0LQR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349700 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAV+GF CAA+PAEAPKGSAD A VGAQLAPGAENEIGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           S+DVVEAP+GGPGA AGGFVPA AP S ASA+EFSA AAV AVAGFFF
Sbjct: 61  SEDVVEAPVGGPGATAGGFVPAPAP-SAASALEFSAAAAVTAVAGFFF 107

[Close]

BLAST of Cla022727 vs. TrEMBL
Match: W9RCC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027637 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-10
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 6   VVFALVLFAVVGFACAASPAEAPKGSADNADVGA-QLAPGAENEIGNTEGADAPAGSDDV 65
           VV AL+LFAV G A A +P         +AD       P +++ IGN++   + +  D+V
Sbjct: 8   VVLALLLFAVAGLASAETP---------DADAAVPSFGPSSDDLIGNSDEGIS-SHEDEV 67

Query: 66  VEAPIGGPGAAAGGFVP-AEAP--NSGASAVEFSAVA--AVAAVAGFFF 109
           VEAP+GGP A  G F P AEAP  +SGASA++ SAVA  AVAAVAG+FF
Sbjct: 68  VEAPVGGP-APPGAFPPTAEAPGSHSGASAIDVSAVAGVAVAAVAGYFF 105

[Close]

BLAST of Cla022727 vs. TrEMBL
Match: B9HLD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18270g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGA--DAP 60
           MA + +V ALV  A+VG A AA PA  P  +A  A+     AP +++ IG  + A   AP
Sbjct: 1   MASKVIVLALVFVAIVGLASAAGPA--PSTTALPAE-----APLSDDFIGTDDAAAAGAP 60

Query: 61  AGSDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           +G D VV  P+G   AA G   P+ +P S ++A++FSA+  VAAVAG+ F
Sbjct: 61  SGGDAVVPGPMGSVEAAGG---PSGSPKSDSAALKFSAITGVAAVAGYLF 100

[Close]

BLAST of Cla022727 vs. TrEMBL
Match: K7KQS4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G172500 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 48/114 (42.11%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 2   ARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAGS 61
           AR+ VV A+V+FA++G ACA +PA AP+ SAD+ +         +  IG    A   A S
Sbjct: 4   ARRVVVLAVVMFAIIGLACAKNPAPAPEASADDYE-------DDDYSIGALTAASGAASS 63

Query: 62  -DDVVEAPIGG---PGA---AAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
            + VV APIGG   PGA   A GG   + A +S        A AA AA+AGFF+
Sbjct: 64  PNSVVAAPIGGPVPPGAFDNAKGGSPSSAAASSSLGHFSAVAGAASAALAGFFY 110

[Close]

BLAST of Cla022727 vs. TrEMBL
Match: A0A061E8S0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010665 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQ +V ALV  A+VG   A   +   KG A+ A       P  ++ IGNT+ A AP  
Sbjct: 1   MARQILVLALVFIALVGLVSAGEASSGSKGGAEAA------TPINDDTIGNTDEASAPTT 60

Query: 61  SDD---VVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGF 107
            D+   VVE P+G    A      A+ P+SGA+ +  SAVA  AAVA +
Sbjct: 61  GDEAAAVVEGPVGSEDEAKNASA-AQPPSSGATTLGVSAVAGAAAVASY 102

[Close]

BLAST of Cla022727 vs. NCBI nr
Match: gi|700207217|gb|KGN62336.1| (hypothetical protein Csa_2G349700 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 9.8e-44
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAV+GF CAA+PAEAPKGSAD A VGAQLAPGAENEIGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  SDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           S+DVVEAP+GGPGA AGGFVPA AP S ASA+EFSA AAV AVAGFFF
Sbjct: 61  SEDVVEAPVGGPGATAGGFVPAPAP-SAASALEFSAAAAVTAVAGFFF 107

[Close]

BLAST of Cla022727 vs. NCBI nr
Match: gi|702454873|ref|XP_010026590.1| (PREDICTED: classical arabinogalactan protein 11-like [Eucalyptus grandis])

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGADAPAG 60
           MARQ VV ALVL AV+G A A +PA+AP   +     G   AP  ++ +G  +  DAPA 
Sbjct: 1   MARQLVVLALVLVAVLGLASAQAPAKAPAAHSG----GEAAAPADDSTVGPID--DAPAS 60

Query: 61  SDDVVEAPIGGPGAAAGGFV-----PAEAPNS--GASAVEFSAVAAVAAVAGFFF 109
            DD VEAP+GGP    G F      PA+AP+S  GA+  + SAVA VAAVAG+FF
Sbjct: 61  GDDAVEAPVGGP-VPEGAFPPTQEGPAQAPSSENGATVTKVSAVAVVAAVAGYFF 108

[Close]

BLAST of Cla022727 vs. NCBI nr
Match: gi|703113218|ref|XP_010100328.1| (hypothetical protein L484_027637 [Morus notabilis])

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 6   VVFALVLFAVVGFACAASPAEAPKGSADNADVGA-QLAPGAENEIGNTEGADAPAGSDDV 65
           VV AL+LFAV G A A +P         +AD       P +++ IGN++   + +  D+V
Sbjct: 8   VVLALLLFAVAGLASAETP---------DADAAVPSFGPSSDDLIGNSDEGIS-SHEDEV 67

Query: 66  VEAPIGGPGAAAGGFVP-AEAP--NSGASAVEFSAVA--AVAAVAGFFF 109
           VEAP+GGP A  G F P AEAP  +SGASA++ SAVA  AVAAVAG+FF
Sbjct: 68  VEAPVGGP-APPGAFPPTAEAPGSHSGASAIDVSAVAGVAVAAVAGYFF 105

[Close]

BLAST of Cla022727 vs. NCBI nr
Match: gi|224100113|ref|XP_002311748.1| (hypothetical protein POPTR_0008s18270g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADNADVGAQLAPGAENEIGNTEGA--DAP 60
           MA + +V ALV  A+VG A AA PA  P  +A  A+     AP +++ IG  + A   AP
Sbjct: 1   MASKVIVLALVFVAIVGLASAAGPA--PSTTALPAE-----APLSDDFIGTDDAAAAGAP 60

Query: 61  AGSDDVVEAPIGGPGAAAGGFVPAEAPNSGASAVEFSAVAAVAAVAGFFF 109
           +G D VV  P+G   AA G   P+ +P S ++A++FSA+  VAAVAG+ F
Sbjct: 61  SGGDAVVPGPMGSVEAAGG---PSGSPKSDSAALKFSAITGVAAVAGYLF 100

[Close]

BLAST of Cla022727 vs. NCBI nr
Match: gi|1009153093|ref|XP_015894450.1| (PREDICTED: anther-specific protein BCP1 [Ziziphus jujuba])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 49/119 (41.18%), Postives = 66/119 (55.46%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVVGFACAASPAEAPKGSADN---ADVGAQLAPGAENEIGNTEGAD- 60
           MARQ +V ALV FA+  +ACA + A+AP    D    A+    +AP +++ IGN +  D 
Sbjct: 1   MARQVLVVALVFFAIFSYACAET-AKAPVPDGDENPAANAIPSMAPSSDDHIGNDDDGDN 60

Query: 61  ---APA---GSDDVVEAPIGGPGAAAGGFVP-AEAPNSGASAVEFSAVAAVAAVAGFFF 109
              A A    S+DVVE PIGG G       P A    S AS+++ SA A +A  AG+FF
Sbjct: 61  NTAAAANGPSSNDVVEGPIGGAG--LDSLTPGASHSESSASSLQLSAFAGLAVAAGYFF 116

The following BLAST results are available for this feature:

BLAST of Cla022727 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQR1_CUCSA	6.9e-44	87.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349700 PE=4 SV=1	[more]
W9RCC8_9ROSA	5.0e-10	48.62	Uncharacterized protein OS=Morus notabilis GN=L484_027637 PE=4 SV=1	[more]
B9HLD0_POPTR	1.4e-09	42.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18270g PE=4 SV=1	[more]
K7KQS4_SOYBN	1.2e-08	42.11	Uncharacterized protein OS=Glycine max GN=GLYMA_05G172500 PE=4 SV=1	[more]
A0A061E8S0_THECC	1.6e-08	40.37	Uncharacterized protein OS=Theobroma cacao GN=TCM_010665 PE=4 SV=1	[more]

BLAST of Cla022727 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207217\|gb\|KGN62336.1\|	9.8e-44	87.04	hypothetical protein Csa_2G349700 [Cucumis sativus]	[more]
gi\|702454873\|ref\|XP_010026590.1\|	7.3e-15	49.57	PREDICTED: classical arabinogalactan protein 11-like [Eucalyptus grandis]	[more]
gi\|703113218\|ref\|XP_010100328.1\|	7.1e-10	48.62	hypothetical protein L484_027637 [Morus notabilis]	[more]
gi\|224100113\|ref\|XP_002311748.1\|	2.1e-09	42.73	hypothetical protein POPTR_0008s18270g [Populus trichocarpa]	[more]
gi\|1009153093\|ref\|XP_015894450.1\|	1.0e-08	41.18	PREDICTED: anther-specific protein BCP1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla022727	Cla022727.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla022727	Cla97C08G161260	Watermelon (97103) v2	wmwmbB100
Cla022727	Csa2G349700	Cucumber (Chinese Long) v2	cuwmB111
Cla022727	ClCG08G017550	Watermelon (Charleston Gray)	wcgwmB400
Cla022727	CSPI02G17470	Wild cucumber (PI 183967)	cpiwmB116
Cla022727	CmaCh05G000530	Cucurbita maxima (Rimu)	cmawmB753
Cla022727	Lsi08G016300	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla022727	Cp4.1LG11g00390	Cucurbita pepo (Zucchini)	cpewmB101
Cla022727	MELO3C010704.2	Melon (DHL92) v3.6.1	medwmB295
Cla022727	Carg21842	Silver-seed gourd	carwmB0500
Cla022727	Bhi04G000513	Wax gourd	wgowmB297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla022727	Melon (DHL92) v3.5.1	mewmB048
Cla022727	Melon (DHL92) v3.5.1	mewmB300
Cla022727	Watermelon (Charleston Gray)	wcgwmB278
Cla022727	Cucumber (Chinese Long) v2	cuwmB376
Cla022727	Cucurbita pepo (Zucchini)	cpewmB022
Cla022727	Cucurbita pepo (Zucchini)	cpewmB397
Cla022727	Cucurbita pepo (Zucchini)	cpewmB789
Cla022727	Bottle gourd (USVL1VR-Ls)	lsiwmB296
Cla022727	Cucumber (Gy14) v2	cgybwmB108
Cla022727	Cucumber (Gy14) v2	cgybwmB349
Cla022727	Melon (DHL92) v3.6.1	medwmB049
Cla022727	Silver-seed gourd	carwmB0230
Cla022727	Silver-seed gourd	carwmB0621
Cla022727	Cucumber (Chinese Long) v3	cucwmB124
Cla022727	Cucumber (Chinese Long) v3	cucwmB399
Cla022727	Watermelon (97103) v2	wmwmbB095
Cla022727	Wax gourd	wgowmB540
Cla022727	Watermelon (97103) v1	wmwmB063
Cla022727	Cucumber (Gy14) v1	cgywmB078
Cla022727	Cucumber (Gy14) v1	cgywmB706
Cla022727	Cucurbita maxima (Rimu)	cmawmB154
Cla022727	Cucurbita maxima (Rimu)	cmawmB364
Cla022727	Cucurbita maxima (Rimu)	cmawmB670
Cla022727	Cucurbita moschata (Rifu)	cmowmB139
Cla022727	Cucurbita moschata (Rifu)	cmowmB666
Cla022727	Cucurbita moschata (Rifu)	cmowmB748
Cla022727	Wild cucumber (PI 183967)	cpiwmB382