CSPI02G17470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G17470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 16484555 .. 16485174 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACCTTCACAATTCCTTAGCAGTTCTTCACATTCATTCAAAGAACTGCACGTTCCTTCAATAACCCAAAAACAAAAACAACATAAAACAAAACAAAACCCAAAAAAATGGCACGCCAATTTGTTGTCTTTGCCTTGGTCCTCTTCGCCGTCATCGGCTTCACCTGCGCAGCCACACCTGCCGAAGCTCCCAAGGGCTCTGCTGACAGCGCTGGAGTTGGAGCTCAATTGGCTCCAGGAGCCGAAAACGAGATTGGAAACACCGAGGGGGCTGATGCACCCGCCGGCAGCGAGGATGTGGTTGAAGCCCCTGTGGGCGGACCTGGTGCTACAGCAGGTGGATTTGTCCCTGCTCCAGCTCCCAGTGCTGCCTCTGCCCTCGAATTCTCTGCCGCTGCTGCCGTTACCGCCGTTGCAGGATTTTTCTTCTTCTTCTAATTAAGTGGACGACAGATTTCATTTGATTCTCGTCGCGTGCTTTCATATTTTTAATGATTTACCATTGTTTCTCAATTGGAAATTTGAATAAAAGAAATTAAAATAAGTGAGGGTTAGTAAAATTTGCACTTTTTTTCTCTTTTATTTCTCTTTTCTTCTTACCCTTTTCCCTCTTTATAAACC

mRNA sequence

ATGGCACGCCAATTTGTTGTCTTTGCCTTGGTCCTCTTCGCCGTCATCGGCTTCACCTGCGCAGCCACACCTGCCGAAGCTCCCAAGGGCTCTGCTGACAGCGCTGGAGTTGGAGCTCAATTGGCTCCAGGAGCCGAAAACGAGATTGGAAACACCGAGGGGGCTGATGCACCCGCCGGCAGCGAGGATGTGGTTGAAGCCCCTGTGGGCGGACCTGGTGCTACAGCAGGTGGATTTGTCCCTGCTCCAGCTCCCAGTGCTGCCTCTGCCCTCGAATTCTCTGCCGCTGCTGCCGTTACCGCCGTTGCAGGATTTTTCTTCTTCTTCTAA

Coding sequence (CDS)

ATGGCACGCCAATTTGTTGTCTTTGCCTTGGTCCTCTTCGCCGTCATCGGCTTCACCTGCGCAGCCACACCTGCCGAAGCTCCCAAGGGCTCTGCTGACAGCGCTGGAGTTGGAGCTCAATTGGCTCCAGGAGCCGAAAACGAGATTGGAAACACCGAGGGGGCTGATGCACCCGCCGGCAGCGAGGATGTGGTTGAAGCCCCTGTGGGCGGACCTGGTGCTACAGCAGGTGGATTTGTCCCTGCTCCAGCTCCCAGTGCTGCCTCTGCCCTCGAATTCTCTGCCGCTGCTGCCGTTACCGCCGTTGCAGGATTTTTCTTCTTCTTCTAA

Homology

[Close]

BLAST of CSPI02G17470 vs. TrEMBL
Match: A0A0A0LQR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349700 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.5e-46
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADSAGVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAVIGFTCAATPAEAPKGSAD+AGVGAQLAPGAENEIGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  SEDVVEAPVGGPGATAGGFVPAPAPSAASALEFSAAAAVTAVAGFFFFF 110
           SEDVVEAPVGGPGATAGGFVPAPAPSAASALEFSAAAAVTAVAGFFFFF
Sbjct: 61  SEDVVEAPVGGPGATAGGFVPAPAPSAASALEFSAAAAVTAVAGFFFFF 109

[Close]

BLAST of CSPI02G17470 vs. NCBI nr
Match: gi|700207217|gb|KGN62336.1| (hypothetical protein Csa_2G349700 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADSAGVGAQLAPGAENEIGNTEGADAPAG 60
           MARQFVVFALVLFAVIGFTCAATPAEAPKGSAD+AGVGAQLAPGAENEIGNTEGADAPAG
Sbjct: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNTEGADAPAG 60

Query: 61  SEDVVEAPVGGPGATAGGFVPAPAPSAASALEFSAAAAVTAVAGFFFFF 110
           SEDVVEAPVGGPGATAGGFVPAPAPSAASALEFSAAAAVTAVAGFFFFF
Sbjct: 61  SEDVVEAPVGGPGATAGGFVPAPAPSAASALEFSAAAAVTAVAGFFFFF 109

[Close]

BLAST of CSPI02G17470 vs. NCBI nr
Match: gi|702454873|ref|XP_010026590.1| (PREDICTED: classical arabinogalactan protein 11-like [Eucalyptus grandis])

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 1   MARQFVVFALVLFAVIGFTCAATPAEAPKGSADSAGVGAQLAPGAENEIGNTEGADAPAG 60
           MARQ VV ALVL AV+G   A  PA+AP  +A S G  A  AP  ++ +G  +  DAPA 
Sbjct: 1   MARQLVVLALVLVAVLGLASAQAPAKAP--AAHSGGEAA--APADDSTVGPID--DAPAS 60

Query: 61  SEDVVEAPVGGPGATAGGFV-----PAPAPSA---ASALEFSAAAAVTAVAGFFF 108
            +D VEAPVGGP    G F      PA APS+   A+  + SA A V AVAG+FF
Sbjct: 61  GDDAVEAPVGGP-VPEGAFPPTQEGPAQAPSSENGATVTKVSAVAVVAAVAGYFF 108

The following BLAST results are available for this feature:

BLAST of CSPI02G17470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G17470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQR1_CUCSA	7.5e-46	99.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349700 PE=4 SV=1	[more]

BLAST of CSPI02G17470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G17470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207217\|gb\|KGN62336.1\|	1.1e-45	99.08	hypothetical protein Csa_2G349700 [Cucumis sativus]	[more]
gi\|702454873\|ref\|XP_010026590.1\|	3.7e-06	48.70	PREDICTED: classical arabinogalactan protein 11-like [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G17470.1	CSPI02G17470.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G17470	Cla022727	Watermelon (97103) v1	cpiwmB116
CSPI02G17470	Csa2G349700	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G17470	ClCG08G017550	Watermelon (Charleston Gray)	cpiwcgB172
CSPI02G17470	Lsi08G016300	Bottle gourd (USVL1VR-Ls)	cpilsiB141
CSPI02G17470	MELO3C010704.2	Melon (DHL92) v3.6.1	cpimedB114
CSPI02G17470	Cla97C08G161260	Watermelon (97103) v2	cpiwmbB166
CSPI02G17470	Bhi04G000513	Wax gourd	cpiwgoB159
CSPI02G17470	Cp4.1LG11g00390	Cucurbita pepo (Zucchini)	cpecpiB092
CSPI02G17470	Carg21842	Silver-seed gourd	carcpiB0537

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G17470	Wax gourd	cpiwgoB197
CSPI02G17470	Wild cucumber (PI 183967)	cpicpiB008
CSPI02G17470	Wild cucumber (PI 183967)	cpicpiB076
CSPI02G17470	Cucumber (Gy14) v1	cgycpiB073
CSPI02G17470	Cucumber (Gy14) v1	cgycpiB578
CSPI02G17470	Cucurbita maxima (Rimu)	cmacpiB167
CSPI02G17470	Cucurbita maxima (Rimu)	cmacpiB412
CSPI02G17470	Cucurbita maxima (Rimu)	cmacpiB700
CSPI02G17470	Cucurbita maxima (Rimu)	cmacpiB793
CSPI02G17470	Cucurbita moschata (Rifu)	cmocpiB152
CSPI02G17470	Cucurbita moschata (Rifu)	cmocpiB693
CSPI02G17470	Cucurbita moschata (Rifu)	cmocpiB782
CSPI02G17470	Cucumber (Chinese Long) v2	cpicuB082
CSPI02G17470	Melon (DHL92) v3.5.1	cpimeB089
CSPI02G17470	Melon (DHL92) v3.5.1	cpimeB118
CSPI02G17470	Watermelon (Charleston Gray)	cpiwcgB142
CSPI02G17470	Watermelon (97103) v1	cpiwmB126
CSPI02G17470	Cucurbita pepo (Zucchini)	cpecpiB030
CSPI02G17470	Cucurbita pepo (Zucchini)	cpecpiB383
CSPI02G17470	Cucurbita pepo (Zucchini)	cpecpiB814
CSPI02G17470	Bottle gourd (USVL1VR-Ls)	cpilsiB116
CSPI02G17470	Melon (DHL92) v3.6.1	cpimedB080
CSPI02G17470	Melon (DHL92) v3.6.1	cpimedB095
CSPI02G17470	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G17470	Cucumber (Gy14) v2	cgybcpiB207
CSPI02G17470	Silver-seed gourd	carcpiB0274
CSPI02G17470	Silver-seed gourd	carcpiB0656
CSPI02G17470	Cucumber (Chinese Long) v3	cpicucB074
CSPI02G17470	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G17470	Cucumber (Chinese Long) v3	cpicucB105
CSPI02G17470	Watermelon (97103) v2	cpiwmbB134