Cla022563 (gene) Watermelon (97103) v1

Overview
NameCla022563
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEF hand family protein (AHRD V1 ***- B4G1S0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type
LocationChr8 : 24632662 .. 24632925 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTCATGGTGTAAGCAAGCTCCATTTCTCCAGGGAAGAGATGAAGGAAATCTTCCGAGAGCACGACATCGACGGAGACGGTTACCTCAGCATCAGTGAGCTCATCAAAGCCATGGGGTTTTTGGGTCACTCTATACCATTCTACAAAGCTCATTACGGTATGGCTTATTCTGATGAGAATGGTGACGGCTTCATCTCTGAAGATGAGCTTGACAAACTCATTGATTATGTCGAAAAGTTTCAGTACAATAAGCGTTAA

mRNA sequence

ATGGCTTGTCATGGTGTAAGCAAGCTCCATTTCTCCAGGGAAGAGATGAAGGAAATCTTCCGAGAGCACGACATCGACGGAGACGGTTACCTCAGCATCAGTGAGCTCATCAAAGCCATGGGGTTTTTGGGTCACTCTATACCATTCTACAAAGCTCATTACGGTATGGCTTATTCTGATGAGAATGGTGACGGCTTCATCTCTGAAGATGAGCTTGACAAACTCATTGATTATGTCGAAAAGTTTCAGTACAATAAGCGTTAA

Coding sequence (CDS)

ATGGCTTGTCATGGTGTAAGCAAGCTCCATTTCTCCAGGGAAGAGATGAAGGAAATCTTCCGAGAGCACGACATCGACGGAGACGGTTACCTCAGCATCAGTGAGCTCATCAAAGCCATGGGGTTTTTGGGTCACTCTATACCATTCTACAAAGCTCATTACGGTATGGCTTATTCTGATGAGAATGGTGACGGCTTCATCTCTGAAGATGAGCTTGACAAACTCATTGATTATGTCGAAAAGTTTCAGTACAATAAGCGTTAA

Protein sequence

MACHGVSKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGFISEDELDKLIDYVEKFQYNKR
Homology
[Close]
BLAST of Cla022563 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-36
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 1  MACHGVSKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSD 60
          MA  GVSK +FSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAY D
Sbjct: 1  MALPGVSKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCD 60

Query: 61 ENGDGFISEDELDKLIDYVEKFQYNKR 88
          ENGDG ISEDELDKLIDY E+FQ  +R
Sbjct: 61 ENGDGLISEDELDKLIDYAERFQKRRR 87

[Close]
BLAST of Cla022563 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-26
Identity = 53/81 (65.43%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 7  SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
          ++L  SRE++KEIFREHDIDGDG LS++E++KA G  G  +PFYKAHYGMA++DENGDGF
Sbjct: 6  TRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGF 65

Query: 67 ISEDELDKLIDYVEKFQYNKR 88
          I E+ELDKL+DY +KFQ+ ++
Sbjct: 66 IEEEELDKLVDYAQKFQHKRK 86

[Close]
BLAST of Cla022563 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-18
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1 

Query: 7   SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
           S + FSRE++KEIF+ HD D DG+L++ E+ KA  FLG  +P YKA++GM Y+D N DG 
Sbjct: 97  SNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGL 156

Query: 67  ISEDELDKLIDYVEKFQYNKR 88
           IS+DEL+KL+DY  KF +NKR
Sbjct: 157 ISKDELEKLVDYAYKF-FNKR 176

[Close]
BLAST of Cla022563 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 7   SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
           S + FSRE++KEIF+ +D D DG+L+I E+ KA   LG   PF KA++GM Y+D N DG 
Sbjct: 121 SNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGL 180

Query: 67  ISEDELDKLIDYVEKFQYNK 87
           I EDELDKLI+Y  KF   K
Sbjct: 181 IGEDELDKLINYANKFMKKK 200

[Close]
BLAST of Cla022563 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-16
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 

Query: 13 REEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGFISEDEL 72
          +EEMKE+FREHD +GDG LSI EL +A G  G   P Y+A +G+  +D++GDGFISE EL
Sbjct: 17 KEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISEQEL 76

Query: 73 DKLIDYVEKFQYN 86
          DK++DY  K +YN
Sbjct: 77 DKVVDYAIKCKYN 89

[Close]
BLAST of Cla022563 vs. NCBI nr
Match: gi|700207406|gb|KGN62525.1| (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-36
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 1  MACHGVSKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSD 60
          MA  GVSK +FSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAY D
Sbjct: 1  MALPGVSKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCD 60

Query: 61 ENGDGFISEDELDKLIDYVEKFQYNKR 88
          ENGDG ISEDELDKLIDY E+FQ  +R
Sbjct: 61 ENGDGLISEDELDKLIDYAERFQKRRR 87

[Close]
BLAST of Cla022563 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 53/81 (65.43%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 7   SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
           ++L  SRE++KEIFREHDIDGDG LS++E++KA G  G  +PFYKAHYGMA++DENGDGF
Sbjct: 87  TRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGF 146

Query: 67  ISEDELDKLIDYVEKFQYNKR 88
           I E+ELDKL+DY +KFQ+ ++
Sbjct: 147 IEEEELDKLVDYAQKFQHKRK 167

[Close]
BLAST of Cla022563 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 13 REEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGFISEDEL 72
          +EEMKE+FREHD +GDG LSI EL +A G  G   P Y+A +G+  +D++GDGFISE EL
Sbjct: 17 KEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISEQEL 76

Query: 73 DKLIDYVEK 82
          DK++DY  K
Sbjct: 77 DKVVDYAIK 85


HSP 2 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 53/81 (65.43%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 7  SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
          ++L  SRE++KEIFREHDIDGDG LS++E++KA G  G  +PFYKAHYGMA++DENGDGF
Sbjct: 6  TRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGF 65

Query: 67 ISEDELDKLIDYVEKFQYNKR 88
          I E+ELDKL+DY +KFQ+ ++
Sbjct: 66 IEEEELDKLVDYAQKFQHKRK 86

[Close]
BLAST of Cla022563 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1 

Query: 7   SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
           S + FSRE++KEIF+ HD D DG+L++ E+ KA  FLG  +P YKA++GM Y+D N DG 
Sbjct: 97  SNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGL 156

Query: 67  ISEDELDKLIDYVEKFQYNKR 88
           IS+DEL+KL+DY  KF +NKR
Sbjct: 157 ISKDELEKLVDYAYKF-FNKR 176

[Close]
BLAST of Cla022563 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 7   SKLHFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYSDENGDGF 66
           S + FSRE++KEIF+ +D D DG+L+I E+ KA   LG   PF KA++GM Y+D N DG 
Sbjct: 121 SNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGL 180

Query: 67  ISEDELDKLIDYVEKFQYNK 87
           I EDELDKLI+Y  KF   K
Sbjct: 181 IGEDELDKLINYANKFMKKK 200

The following BLAST results are available for this feature:
BLAST of Cla022563 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKX1_CUCSA4.2e-3687.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA8.9e-2665.43Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA1.0e-1856.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA1.3e-1655.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0LKW4_CUCSA2.2e-1657.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1[more]
BLAST of Cla022563 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207406|gb|KGN62525.1|6.1e-3687.36hypothetical protein Csa_2G359940 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|1.3e-2565.43PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|7.7e-1557.97PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|1.5e-1856.79hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|1.8e-1655.00hypothetical protein Csa_5G067670 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU12748watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU67557watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022563Cla022563.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU67557WMU67557transcribed_cluster
WMU12748WMU12748transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 15..40
score: 5.
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 60..75
score: 0.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 15..43
score: 3.2E-4coord: 51..79
score: 1
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 60..82
score: 8.153coord: 11..46
score: 15
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 12..77
score: 5.5
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 3..75
score: 6.84
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 60..72
score: -coord: 24..36
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 12..78
score: 2.5
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 12..78
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla022563Cla97C08G159390Watermelon (97103) v2wmwmbB100
Cla022563ClCG08G015820Watermelon (Charleston Gray)wcgwmB400
Cla022563CmaCh12G005390Cucurbita maxima (Rimu)cmawmB148
Cla022563CmoCh12G004830Cucurbita moschata (Rifu)cmowmB134
Cla022563MELO3C010868.2Melon (DHL92) v3.6.1medwmB295
Cla022563CsaV3_2G027870Cucumber (Chinese Long) v3cucwmB124
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla022563Melon (DHL92) v3.6.1medwmB215
Cla022563Melon (DHL92) v3.6.1medwmB487
Cla022563Silver-seed gourdcarwmB0172
Cla022563Silver-seed gourdcarwmB0766
Cla022563Cucumber (Chinese Long) v3cucwmB310
Cla022563Watermelon (97103) v2wmwmbB091
Cla022563Wax gourdwgowmB297
Cla022563Wax gourdwgowmB601
Cla022563Watermelon (97103) v1wmwmB059
Cla022563Watermelon (97103) v1wmwmB072
Cla022563Cucumber (Gy14) v1cgywmB195
Cla022563Cucumber (Gy14) v1cgywmB422
Cla022563Cucumber (Gy14) v1cgywmB433
Cla022563Cucurbita maxima (Rimu)cmawmB014
Cla022563Cucurbita maxima (Rimu)cmawmB422
Cla022563Cucurbita maxima (Rimu)cmawmB484
Cla022563Cucurbita maxima (Rimu)cmawmB753
Cla022563Cucurbita moschata (Rifu)cmowmB007
Cla022563Cucurbita moschata (Rifu)cmowmB081
Cla022563Cucurbita moschata (Rifu)cmowmB416
Cla022563Cucurbita moschata (Rifu)cmowmB748
Cla022563Wild cucumber (PI 183967)cpiwmB116
Cla022563Wild cucumber (PI 183967)cpiwmB300
Cla022563Wild cucumber (PI 183967)cpiwmB597
Cla022563Melon (DHL92) v3.5.1mewmB218
Cla022563Melon (DHL92) v3.5.1mewmB300
Cla022563Melon (DHL92) v3.5.1mewmB501
Cla022563Watermelon (Charleston Gray)wcgwmB273
Cla022563Cucumber (Chinese Long) v2cuwmB111
Cla022563Cucumber (Chinese Long) v2cuwmB298
Cla022563Cucumber (Chinese Long) v2cuwmB576
Cla022563Cucurbita pepo (Zucchini)cpewmB101
Cla022563Cucurbita pepo (Zucchini)cpewmB541
Cla022563Cucurbita pepo (Zucchini)cpewmB756
Cla022563Cucurbita pepo (Zucchini)cpewmB782
Cla022563Bottle gourd (USVL1VR-Ls)lsiwmB293
Cla022563Bottle gourd (USVL1VR-Ls)lsiwmB465
Cla022563Cucumber (Gy14) v2cgybwmB108
Cla022563Cucumber (Gy14) v2cgybwmB277
Cla022563Cucumber (Gy14) v2cgybwmB539