Cla022409 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCGTTGCTTTCCTTACCCACCTCCTGGTTACATGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGATTCGATTAAGGTTTGTTTCAGCTATTTGGTTGGTTTTCATAATATATGCTGGATTCAATTGTGTTCTGATTCCATTTGATTGCGAGATCTTCTTGGAATTGTAACTTTTTGGATGGGGGTATATCTGTAATCAGGAACGGCTTTTCTTGTAATTTTTGCGTCGATGGGGAAACGATGGATGTAGGTTTTCTTGTTTCGATTGGGTCCGAGAGTTACAAGTTTTGTACCCTAATGATTGGAATGTTGATTTTGGATAATTTGGACTAAGTTTCTAGGTTTAGTTTTGGTTCTTCTGTGTAATATCTCTGAAAGGAACAAGAGATCTTTGAGAGTTCGAGTGTATAGATAGTGGGTTAGGGTTCTGCTAGTTGCATGTCGTATTATTCGTTCTTGGATCTTGTATGGATGTATTCCCCCTTTCAAAATCCAAACACTTGAATAAACGTTTTGAACTTGTAATTTTTGATAGATAGTGTAATCATCATGTAAACGTCATGGTTTTCTAAATGCTTTTAAAACCCAGTTCCTTTTTCTTTCAAATGGATTGTTTTCTACAAGTTTTAAATGGAAGAGATTAGGGTTTTCCGTAAGTTTATTATAAACGCTTTTACATCAAATTTTTGTAGAACAATTTCTCCCTTGATATCTTCGGGCATGTGAATACATGACATGAATGTATGAGTTTGCTAGTTAGAATATGATGATTATCTGAGTCCAGATGAAATTCTTCTTTACAATAGGAAAGGAAAATAGCTACCCGTTTTTAAGGGCTGCATTATATTAGTTAAGGAATGGTTGATCTGTTTGGTGCTTTGTCGTCTGCTCTTTTTGAACTGGTTATTCTGGTGCGTTATAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGAAAGAAAGAGAAAAGTAAGCACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACATAAAAGCAAAGAACGTAAAGAAAAATCCTCCCATAGCCGCGACTTGAATGATCAGAAACAAAAGGAATGCTTAAACGAAGCCAAGGACCTTCTAAAGGGTACCAAAGTTGAAGCTGAACAATTAGAAGGTAGTGGTCTCACTGAAGAGCATGGACAACCTGTATGGCCTCAAAGCCCTGGCTACTTGTCTGACGGAACTCAGATCAGCCACAAGAGGAAAAGGGATGCTGCATTACGGCCTAATGATGGTTGTAAGCCTGGTGGGTTCTCTTTGTGGATAATAGGCACTTTTATGAAATAAGTTATATTGGCCACTTGAACAAACGCTAATATATTATTGATCTGATCGTACACAGGCAAAATCATCCGGATCAAACTGGCATCTTCACTGAGCCAGCAAGAGGATTCATCAGCTGGCAGTGAACAGACGTGTTCTACATCTGGTCGTGATATTTCTGTTGATCAAAAGAGAGATGAAAACAGCCGTGGATCTAATCAGCAAATTACTATCTTCACCAACGCTGAAACAGCTGTTGATGTCAATGTTCCAACTTCGTCCAAACCAATGATTGTAGACCCTCCTTTGCATCCCATCAAGGACATTAGTTCTAAGGGGGGTAATGTTGTGTCATTACCTCCTCGCATCAGAAGTCCTGCTGATTCTGCTTATGAGGCCTTGTTTAATAAATGGGTAGCACCACCACTTCAGTTGGAGCAACAAACCGATGATGAAGAATGGCTCTTTGGAAGAACAAGAAAGCAAGATGGACCAAGTATCATGACCAACAAAGCTTTCAGTTCTGTTCCCAGCTGTGGTAGAAGTTCAAGTTTGTGGCCGAGGGGACAATATCTTGCCGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGA ATGTCTCGTTGCTTTCCTTACCCACCTCCTGGTTACATGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGATTCGATTAAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGAAAGAAAGAGAAAAGTAAGCACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACATAAAAGCAAAGAACGTAAAGAAAAATCCTCCCATAGCCGCGACTTGAATGATCAGAAACAAAAGGAATGCTTAAACGAAGCCAAGGACCTTCTAAAGGGTACCAAAGTTGAAGCTGAACAATTAGAAGGTAGTGGTCTCACTGAAGAGCATGGACAACCTGTATGGCCTCAAAGCCCTGGCTACTTGTCTGACGGAACTCAGATCAGCCACAAGAGGAAAAGGGATGCTGCATTACGGCCTAATGATGGTTGCAAAATCATCCGGATCAAACTGGCATCTTCACTGAGCCAGCAAGAGGATTCATCAGCTGGCAGTGAACAGACGTGTTCTACATCTGGTCGTGATATTTCTGTTGATCAAAAGAGAGATGAAAACAGCCGTGGATCTAATCAGCAAATTACTATCTTCACCAACGCTGAAACAGCTGTTGATGTCAATGTTCCAACTTCGTCCAAACCAATGATTGTAGACCCTCCTTTGCATCCCATCAAGGACATTAGTTCTAAGGGGGGTAATGTTGTGTCATTACCTCCTCGCATCAGAAGTCCTGCTGATTCTGCTTATGAGGCCTTGTTTAATAAATGGGTAGCACCACCACTTCAGTTGGAGCAACAAACCGATGATGAAGAATGGCTCTTTGGAAGAACAAGAAAGCAAGATGGACCAAGTATCATGACCAACAAAGCTTTCAGTTCTGTTCCCAGCTGTGGTAGAAGTTCAAGTTTGTGGCCGAGGGGACAATATCTTGCCGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGA ATGTCTCGTTGCTTTCCTTACCCACCTCCTGGTTACATGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGATTCGATTAAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGAAAGAAAGAGAAAAGTAAGCACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACATAAAAGCAAAGAACGTAAAGAAAAATCCTCCCATAGCCGCGACTTGAATGATCAGAAACAAAAGGAATGCTTAAACGAAGCCAAGGACCTTCTAAAGGGTACCAAAGTTGAAGCTGAACAATTAGAAGGTAGTGGTCTCACTGAAGAGCATGGACAACCTGTATGGCCTCAAAGCCCTGGCTACTTGTCTGACGGAACTCAGATCAGCCACAAGAGGAAAAGGGATGCTGCATTACGGCCTAATGATGGTTGCAAAATCATCCGGATCAAACTGGCATCTTCACTGAGCCAGCAAGAGGATTCATCAGCTGGCAGTGAACAGACGTGTTCTACATCTGGTCGTGATATTTCTGTTGATCAAAAGAGAGATGAAAACAGCCGTGGATCTAATCAGCAAATTACTATCTTCACCAACGCTGAAACAGCTGTTGATGTCAATGTTCCAACTTCGTCCAAACCAATGATTGTAGACCCTCCTTTGCATCCCATCAAGGACATTAGTTCTAAGGGGGGTAATGTTGTGTCATTACCTCCTCGCATCAGAAGTCCTGCTGATTCTGCTTATGAGGCCTTGTTTAATAAATGGGTAGCACCACCACTTCAGTTGGAGCAACAAACCGATGATGAAGAATGGCTCTTTGGAAGAACAAGAAAGCAAGATGGACCAAGTATCATGACCAACAAAGCTTTCAGTTCTGTTCCCAGCTGTGGTAGAAGTTCAAGTTTGTGGCCGAGGGGACAATATCTTGCCGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGA MSRCFPYPPPGYMRKVASTEAALIDSIKLQSERRQSKNDRKKEKSKHKKEKSKDKKERSKDKKHKSKERKEKSSHSRDLNDQKQKECLNEAKDLLKGTKVEAEQLEGSGLTEEHGQPVWPQSPGYLSDGTQISHKRKRDAALRPNDGCKIIRIKLASSLSQQEDSSAGSEQTCSTSGRDISVDQKRDENSRGSNQQITIFTNAETAVDVNVPTSSKPMIVDPPLHPIKDISSKGGNVVSLPPRIRSPADSAYEALFNKWVAPPLQLEQQTDDEEWLFGRTRKQDGPSIMTNKAFSSVPSCGRSSSLWPRGQYLADADVYSLPYTIPF
BLAST of Cla022409 vs. Swiss-Prot
Match: RPOC2_CRYJA (DNA-directed RNA polymerase subunit beta'' OS=Cryptomeria japonica GN=rpoC2 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 6.5e-06 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
HSP 2 Score: 49.7 bits (117), Expect = 7.2e-05 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
HSP 3 Score: 40.8 bits (94), Expect = 3.3e-02 Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 1
BLAST of Cla022409 vs. Swiss-Prot
Match: TI214_OENBE (Protein TIC 214 (Fragment) OS=Oenothera berteroana GN=TIC214 PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 8.5e-06 Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
HSP 2 Score: 42.0 bits (97), Expect = 1.5e-02 Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 1
BLAST of Cla022409 vs. TrEMBL
Match: A0A0A0LK14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345960 PE=4 SV=1) HSP 1 Score: 444.5 bits (1142), Expect = 1.1e-121 Identity = 249/340 (73.24%), Postives = 268/340 (78.82%), Query Frame = 1
BLAST of Cla022409 vs. TrEMBL
Match: A0A068UGF8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024613001 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40 Identity = 130/335 (38.81%), Postives = 167/335 (49.85%), Query Frame = 1
BLAST of Cla022409 vs. TrEMBL
Match: E6NTZ5_JATCU (JHL20J20.12 protein OS=Jatropha curcas GN=JHL20J20.12 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 4.5e-38 Identity = 125/336 (37.20%), Postives = 181/336 (53.87%), Query Frame = 1
BLAST of Cla022409 vs. TrEMBL
Match: A0A022RG69_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008728mg PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 4.5e-38 Identity = 140/378 (37.04%), Postives = 194/378 (51.32%), Query Frame = 1
BLAST of Cla022409 vs. TrEMBL
Match: U5GKC3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02070g PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36 Identity = 123/337 (36.50%), Postives = 168/337 (49.85%), Query Frame = 1
BLAST of Cla022409 vs. NCBI nr
Match: gi|659089111|ref|XP_008445332.1| (PREDICTED: DNA ligase 1-like [Cucumis melo]) HSP 1 Score: 473.8 bits (1218), Expect = 2.5e-130 Identity = 257/337 (76.26%), Postives = 273/337 (81.01%), Query Frame = 1
BLAST of Cla022409 vs. NCBI nr
Match: gi|449450500|ref|XP_004143000.1| (PREDICTED: uncharacterized protein LOC101215840 [Cucumis sativus]) HSP 1 Score: 444.5 bits (1142), Expect = 1.6e-121 Identity = 249/340 (73.24%), Postives = 268/340 (78.82%), Query Frame = 1
BLAST of Cla022409 vs. NCBI nr
Match: gi|661888929|emb|CDP07372.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 173.3 bits (438), Expect = 6.9e-40 Identity = 130/335 (38.81%), Postives = 167/335 (49.85%), Query Frame = 1
BLAST of Cla022409 vs. NCBI nr
Match: gi|697161369|ref|XP_009589462.1| (PREDICTED: uncharacterized protein LOC104086823 [Nicotiana tomentosiformis]) HSP 1 Score: 172.9 bits (437), Expect = 9.0e-40 Identity = 126/345 (36.52%), Postives = 177/345 (51.30%), Query Frame = 1
BLAST of Cla022409 vs. NCBI nr
Match: gi|1012214114|ref|XP_015933957.1| (PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Arachis duranensis]) HSP 1 Score: 169.9 bits (429), Expect = 7.6e-39 Identity = 122/334 (36.53%), Postives = 174/334 (52.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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