Cla021977 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021977
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	PHD finger protein ALFIN-LIKE 9 (AHRD V1 ***- ALFL9_ORYSJ)
Location	Chr8 : 19268526 .. 19269720 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGGTAACCTTTTACTTCATTCTCCTTTCTAAATTGTTTCGCGCTCTTCGTCCTTTTGGTTTTCTCAATTTCATTCCTCTTCGTGTTTTAATAATTGTTGTTTTCCTGTTAATTTCCCTAGATTTTCACTTGTTTTGCTTTTTTTGGTTGCAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGGTTTGATTTATCGCTGCTTTGTTTACGTTTTTGGATTCTATTGTGCATTTGTATGAGACTGAGAGAGATGTTAGAAGTAATGAATAGGAAAAGTAGTTTTTACTAGGAAACTAATTTTGACCACTGCAAACTTAAAGAGCTATTGAAATTGATCGATTTTGATGTCTGGTTTTAGTTGTACAGGTTCCAGCTGCTTATTTTCCTTAGCCAGTTTGTCATGTCTCTCCGTGTTTTTGTTTGTTCTTCTTAGTCTCTCGTTAAGCTGTGCATGTGTGTAAAGTCTTTGATACACTTTATAACTTAAAATAGAACATATGTTTTATATGGAAATGCAAAGATTTGATTTGATGGAATCTGTATAAGCTGGTTAGTAATGCAGTTTAATGTTAAGCTTGTGATGTGATTAAAGATTAGGGGTTTTCCGTTCAGATATTCAAATTTTAGCGTGTAAAAAATATTTTGATGCATGTATATCAGTTAAGATAGAATTAAGTATGTCACATTACTTACTACTTTTAACACATTTGTTACTTGTTCTGCCTATTTCCAAAGGAATTCATGTTTGAATTAGAACCTAAATTTTCTTTAACTTCACATTTACAGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGTATGTGTTCTTCTGATCTGGCCTTCGTTATTTTATATTAATGATTCATACATAGTATCTTTTACATTGTTTGTAGGCTGTAG

mRNA sequence

ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGCTGTAG

Coding sequence (CDS)

ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGCTGTAG

Protein sequence

MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRL

Homology

[Close]

BLAST of Cla021977 vs. Swiss-Prot
Match: ALFL9_ORYSI (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-59
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 1


Query: 5   APYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPA 64
           A YNPRTVEEVFRDFKGRRAGL++ALT DVE+F++QCDPEKENLCLYGFP+E WEVNLPA
Sbjct: 3   AQYNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPA 62

Query: 65  EEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 121
           EEVPPELPEPALGINFARDGMQEKDWLS+VAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 63  EEVPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDR 118

[Close]

BLAST of Cla021977 vs. Swiss-Prot
Match: ALFL9_ORYSJ (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica GN=Os07g0608400 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-59
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 1


Query: 5   APYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPA 64
           A YNPRTVEEVFRDFKGRRAGL++ALT DVE+F++QCDPEKENLCLYGFP+E WEVNLPA
Sbjct: 3   AQYNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPA 62

Query: 65  EEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 121
           EEVPPELPEPALGINFARDGMQEKDWLS+VAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 63  EEVPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDR 118

[Close]

BLAST of Cla021977 vs. Swiss-Prot
Match: ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-57
Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MDGG-APYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG A Y+PRTVEEVFRDFKGRRAG+I+ALTTDVE+F+QQCDPEK+NLCLYGFP+E WE
Sbjct: 1   MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTD 120
           VNLPAEEVPPELPEPALGINFARDGMQE++WLSLVAVHSD WLLSV+FYFG+RFGFD+ D
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRAD 120

[Close]

BLAST of Cla021977 vs. Swiss-Prot
Match: ALFL4_ARATH (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-57
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           M+ G  YNPRTVEEVFRDFKGRRAG+IKALTTDV+EF++ CDPEKENLCLYG P+E WEV
Sbjct: 1   MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEP LGINFARDGM EKDWLSLVAVHSD WLL+VAF+FGARFGFDK DR
Sbjct: 61  NLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADR 120

[Close]

BLAST of Cla021977 vs. Swiss-Prot
Match: ALFL3_ARATH (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-55
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 1   MDGGAP-YNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GGA  YNPRTVEEVF+DFKGRR  ++KALTTDV+EFYQQCDPEKENLCLYG P+E+WE
Sbjct: 1   MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTD 120
           VNLPAEEVPPELPEPALGINFARDG+ EK+WLSLVA+HSD WLLSV+FYFG+RF F K +
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEE 120

[Close]

BLAST of Cla021977 vs. TrEMBL
Match: A0A0A0KDK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363000 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.5e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120

[Close]

BLAST of Cla021977 vs. TrEMBL
Match: A0A0D2UG28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-63
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGG PYNPRTVEE+FRDFKGRRAG+IKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 98  MDGGVPYNPRTVEEIFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 157

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 158 NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFDKADR 217

[Close]

BLAST of Cla021977 vs. TrEMBL
Match: A0A0D2Q8W6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-63
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGG PYNPRTVEE+FRDFKGRRAG+IKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 98  MDGGVPYNPRTVEEIFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 157

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 158 NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFDKADR 217

[Close]

BLAST of Cla021977 vs. TrEMBL
Match: A0A0D2TJA2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-63
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGG PYNPRTVEE+FRDFKGRRAG+IKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGVPYNPRTVEEIFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFDKADR 120

[Close]

BLAST of Cla021977 vs. TrEMBL
Match: A0A0D2TDD0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-63
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGG PYNPRTVEE+FRDFKGRRAG+IKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 98  MDGGVPYNPRTVEEIFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 157

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 158 NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFDKADR 217

[Close]

BLAST of Cla021977 vs. NCBI nr
Match: gi|449452921|ref|XP_004144207.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120

[Close]

BLAST of Cla021977 vs. NCBI nr
Match: gi|659089469|ref|XP_008445525.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120

[Close]

BLAST of Cla021977 vs. NCBI nr
Match: gi|449452919|ref|XP_004144206.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120

[Close]

BLAST of Cla021977 vs. NCBI nr
Match: gi|763787624|gb|KJB54620.1| (hypothetical protein B456_009G041700 [Gossypium raimondii])

HSP 1 Score: 248.4 bits (633), Expect = 6.2e-63
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGG PYNPRTVEE+FRDFKGRRAG+IKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 98  MDGGVPYNPRTVEEIFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 157

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 158 NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFDKADR 217

[Close]

BLAST of Cla021977 vs. NCBI nr
Match: gi|823220774|ref|XP_012443091.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Gossypium raimondii])

HSP 1 Score: 248.4 bits (633), Expect = 6.2e-63
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60
           MDGG PYNPRTVEE+FRDFKGRRAG+IKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGVPYNPRTVEEIFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFDKADR 120

The following BLAST results are available for this feature:

BLAST of Cla021977 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALFL9_ORYSI	4.2e-59	89.66	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica GN=OsI_26819 PE=3 ...	[more]
ALFL9_ORYSJ	4.2e-59	89.66	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica GN=Os07g0608400 ...	[more]
ALFL5_ARATH	1.0e-57	85.12	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1	[more]
ALFL4_ARATH	1.3e-57	85.00	PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2	[more]
ALFL3_ARATH	1.6e-55	80.99	PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1	[more]

BLAST of Cla021977 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK0_CUCSA	3.5e-65	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363000 PE=4 SV=1	[more]
A0A0D2UG28_GOSRA	4.3e-63	95.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1	[more]
A0A0D2Q8W6_GOSRA	4.3e-63	95.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1	[more]
A0A0D2TJA2_GOSRA	4.3e-63	95.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1	[more]
A0A0D2TDD0_GOSRA	4.3e-63	95.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041700 PE=4 SV=1	[more]

BLAST of Cla021977 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452921\|ref\|XP_004144207.1\|	5.1e-65	100.00	PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X2 [Cucumis sativus]	[more]
gi\|659089469\|ref\|XP_008445525.1\|	5.1e-65	100.00	PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo]	[more]
gi\|449452919\|ref\|XP_004144206.1\|	5.1e-65	100.00	PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Cucumis sativus]	[more]
gi\|763787624\|gb\|KJB54620.1\|	6.2e-63	95.83	hypothetical protein B456_009G041700 [Gossypium raimondii]	[more]
gi\|823220774\|ref\|XP_012443091.1\|	6.2e-63	95.83	PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021998	Alfin

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0042393	histone binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042393	histone binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU49248	watermelon EST collection version 2.0	transcribed_cluster
WMU62461	watermelon EST collection version 2.0	transcribed_cluster
WMU77131	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021977	Cla021977.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU49248	WMU49248	transcribed_cluster
WMU77131	WMU77131	transcribed_cluster
WMU62461	WMU62461	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021998	Alfin	PFAM	PF12165	DUF3594	coord: 11..120 score: 1.4
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 1..121 score: 2.5
None	No IPR available	PANTHER	PTHR12321:SF55	PHD FINGER PROTEIN ALFIN-LIKE 4	coord: 1..121 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021977	Cla97C08G152710	Watermelon (97103) v2	wmwmbB100
Cla021977	Csa6G363000	Cucumber (Chinese Long) v2	cuwmB456
Cla021977	MELO3C011479	Melon (DHL92) v3.5.1	mewmB301
Cla021977	ClCG08G009920	Watermelon (Charleston Gray)	wcgwmB400
Cla021977	CSPI06G19140	Wild cucumber (PI 183967)	cpiwmB471
Cla021977	Cucsa.056090	Cucumber (Gy14) v1	cgywmB045
Cla021977	CmaCh05G004160	Cucurbita maxima (Rimu)	cmawmB751
Cla021977	CmoCh05G004300	Cucurbita moschata (Rifu)	cmowmB746
Cla021977	Lsi08G008410	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla021977	Cp4.1LG11g03490	Cucurbita pepo (Zucchini)	cpewmB099
Cla021977	Cp4.1LG07g06120	Cucurbita pepo (Zucchini)	cpewmB788
Cla021977	CsGy6G018580	Cucumber (Gy14) v2	cgybwmB427
Cla021977	MELO3C011479.2	Melon (DHL92) v3.6.1	medwmB296
Cla021977	Carg09305	Silver-seed gourd	carwmB0134
Cla021977	Carg23942	Silver-seed gourd	carwmB0694
Cla021977	CsaV3_6G032020	Cucumber (Chinese Long) v3	cucwmB481
Cla021977	Bhi04G001178	Wax gourd	wgowmB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021977	Cucurbita maxima (Rimu)	cmawmB153
Cla021977	Cucurbita moschata (Rifu)	cmowmB138