Cla020807 (gene) Watermelon (97103) v1

Overview
NameCla020807
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 26591629 .. 26591874 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCCACGCTGACCTCAGTTGTTCTTCGCTATATATTCTTTGGTATAATTTTGTTTACTATAATAACAGCGATATCTGAAACCGTTGTACCTTTGACAACTTATGGCAACTATGAATCTCAAGCGAAGGGAGATGACGGTCGCTTGAAGGTCGAGTCAGCAGATATTGTTGCAGACTACGGCTACTGGAATCCAAACCCCATGTTTGGGGGAGGAAAAGCAGGCCCCATTCACCATTAA

mRNA sequence

ATGGCAGCAGCCACGCTGACCTCAGTTGTTCTTCGCTATATATTCTTTGGTATAATTTTGTTTACTATAATAACAGCGATATCTGAAACCGTTGTACCTTTGACAACTTATGGCAACTATGAATCTCAAGCGAAGGGAGATGACGGTCGCTTGAAGGTCGAGTCAGCAGATATTGTTGCAGACTACGGCTACTGGAATCCAAACCCCATGTTTGGGGGAGGAAAAGCAGGCCCCATTCACCATTAA

Coding sequence (CDS)

ATGGCAGCAGCCACGCTGACCTCAGTTGTTCTTCGCTATATATTCTTTGGTATAATTTTGTTTACTATAATAACAGCGATATCTGAAACCGTTGTACCTTTGACAACTTATGGCAACTATGAATCTCAAGCGAAGGGAGATGACGGTCGCTTGAAGGTCGAGTCAGCAGATATTGTTGCAGACTACGGCTACTGGAATCCAAACCCCATGTTTGGGGGAGGAAAAGCAGGCCCCATTCACCATTAA

Protein sequence

MAAATLTSVVLRYIFFGIILFTIITAISETVVPLTTYGNYESQAKGDDGRLKVESADIVADYGYWNPNPMFGGGKAGPIHH
Homology
[Close]
BLAST of Cla020807 vs. TrEMBL
Match: A0A0A0L6C3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006675 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-12
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 19 ILFTIITAISETVVPLTTYGNYESQAKGDDGRLKVESADIVADYGYWNPNPMFGGGKAGP 78
          ++FTIIT IS T  P +TYGNYE Q KGDDG LK +S +IV DY  W+PNP+FGGG+AG 
Sbjct: 1  MMFTIITTISVTNAP-STYGNYEYQVKGDDGHLKDDS-EIVTDYVDWSPNPIFGGGRAGL 60

Query: 79 IHH 82
          I H
Sbjct: 61 IPH 61

[Close]
BLAST of Cla020807 vs. NCBI nr
Match: gi|700200573|gb|KGN55706.1| (hypothetical protein Csa_3G006675 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 19 ILFTIITAISETVVPLTTYGNYESQAKGDDGRLKVESADIVADYGYWNPNPMFGGGKAGP 78
          ++FTIIT IS T  P +TYGNYE Q KGDDG LK +S +IV DY  W+PNP+FGGG+AG 
Sbjct: 1  MMFTIITTISVTNAP-STYGNYEYQVKGDDGHLKDDS-EIVTDYVDWSPNPIFGGGRAGL 60

Query: 79 IHH 82
          I H
Sbjct: 61 IPH 61

The following BLAST results are available for this feature:
BLAST of Cla020807 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6C3_CUCSA4.0e-1263.49Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006675 PE=4 SV=1[more]
BLAST of Cla020807 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200573|gb|KGN55706.1|5.7e-1263.49hypothetical protein Csa_3G006675 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020807Cla020807.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla020807ClCG05G018580Watermelon (Charleston Gray)wcgwmB285
Cla020807CSPI03G43150Wild cucumber (PI 183967)cpiwmB243
Cla020807Bhi09G001888Wax gourdwgowmB626
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla020807Watermelon (97103) v1wmwmB059
Cla020807Watermelon (97103) v1wmwmB127
Cla020807Watermelon (97103) v1wmwmB135
Cla020807Cucumber (Gy14) v1cgywmB025
Cla020807Cucumber (Gy14) v1cgywmB294
Cla020807Cucumber (Gy14) v1cgywmB615
Cla020807Cucurbita maxima (Rimu)cmawmB026
Cla020807Cucurbita maxima (Rimu)cmawmB159
Cla020807Cucurbita maxima (Rimu)cmawmB440
Cla020807Cucurbita maxima (Rimu)cmawmB626
Cla020807Cucurbita maxima (Rimu)cmawmB759
Cla020807Cucurbita moschata (Rifu)cmowmB018
Cla020807Cucurbita moschata (Rifu)cmowmB145
Cla020807Cucurbita moschata (Rifu)cmowmB434
Cla020807Cucurbita moschata (Rifu)cmowmB753
Cla020807Melon (DHL92) v3.5.1mewmB317
Cla020807Melon (DHL92) v3.5.1mewmB368
Cla020807Melon (DHL92) v3.5.1mewmB569
Cla020807Watermelon (Charleston Gray)wcgwmB412
Cla020807Cucumber (Chinese Long) v2cuwmB126
Cla020807Cucumber (Chinese Long) v2cuwmB244
Cla020807Cucumber (Chinese Long) v2cuwmB496
Cla020807Cucurbita pepo (Zucchini)cpewmB072
Cla020807Cucurbita pepo (Zucchini)cpewmB109
Cla020807Cucurbita pepo (Zucchini)cpewmB559
Cla020807Cucurbita pepo (Zucchini)cpewmB765
Cla020807Cucurbita pepo (Zucchini)cpewmB795
Cla020807Bottle gourd (USVL1VR-Ls)lsiwmB140
Cla020807Bottle gourd (USVL1VR-Ls)lsiwmB316
Cla020807Bottle gourd (USVL1VR-Ls)lsiwmB481
Cla020807Cucumber (Gy14) v2cgybwmB120
Cla020807Cucumber (Gy14) v2cgybwmB230
Cla020807Cucumber (Gy14) v2cgybwmB463
Cla020807Melon (DHL92) v3.6.1medwmB311
Cla020807Melon (DHL92) v3.6.1medwmB364
Cla020807Melon (DHL92) v3.6.1medwmB558
Cla020807Silver-seed gourdcarwmB0102
Cla020807Silver-seed gourdcarwmB0945
Cla020807Silver-seed gourdcarwmB0981
Cla020807Cucumber (Chinese Long) v3cucwmB138
Cla020807Cucumber (Chinese Long) v3cucwmB142
Cla020807Cucumber (Chinese Long) v3cucwmB253
Cla020807Cucumber (Chinese Long) v3cucwmB521
Cla020807Watermelon (97103) v2wmwmbB194
Cla020807Watermelon (97103) v2wmwmbB207
Cla020807Watermelon (97103) v2wmwmbB222
Cla020807Wax gourdwgowmB336
Cla020807Wax gourdwgowmB424