Cla020625 (gene) Watermelon (97103) v1

Overview
NameCla020625
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 28184532 .. 28184768 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTTGATCATCATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

mRNA sequence

ATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTTGATCATCATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

Coding sequence (CDS)

ATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTTGATCATCATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

Protein sequence

MEARLLLLMAVITLLVSGDNKATMGVALVDHHPLSNMQEKHRKHLPSPSLPPPWSHSFNALFASKRKVPNTWDPLHNR
Homology
[Close]
BLAST of Cla020625 vs. TrEMBL
Match: A0A0A0KZW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-29
Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 1  MEARLLLLMAVITLLVSGDNKATMG---VALVDHHPLSNMQEKHRKHLPSPSLPPPWSHS 60
          MEARLLLLMAVITLLVSGDNKATMG   VA +D HPLSNMQEKHRKHL   S PPP SH 
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNALFASKRKVPNTWDPLHNR 79
          FNALFASKRKVPNTWDP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

[Close]
BLAST of Cla020625 vs. NCBI nr
Match: gi|700200087|gb|KGN55245.1| (hypothetical protein Csa_4G641770 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-29
Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 1  MEARLLLLMAVITLLVSGDNKATMG---VALVDHHPLSNMQEKHRKHLPSPSLPPPWSHS 60
          MEARLLLLMAVITLLVSGDNKATMG   VA +D HPLSNMQEKHRKHL   S PPP SH 
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNALFASKRKVPNTWDPLHNR 79
          FNALFASKRKVPNTWDP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

The following BLAST results are available for this feature:
BLAST of Cla020625 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZW1_CUCSA4.5e-2983.95Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641770 PE=4 SV=1[more]
BLAST of Cla020625 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200087|gb|KGN55245.1|6.5e-2983.95hypothetical protein Csa_4G641770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020625Cla020625.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla020625Cla97C05G102050Watermelon (97103) v2wmwmbB207
Cla020625Csa4G641770Cucumber (Chinese Long) v2cuwmB319
Cla020625MELO3C016795Melon (DHL92) v3.5.1mewmB527
Cla020625ClCG05G020320Watermelon (Charleston Gray)wcgwmB285
Cla020625CSPI04G24570Wild cucumber (PI 183967)cpiwmB324
Cla020625CmaCh09G002680Cucurbita maxima (Rimu)cmawmB026
Cla020625CmoCh09G002650Cucurbita moschata (Rifu)cmowmB018
Cla020625Lsi04G015090Bottle gourd (USVL1VR-Ls)lsiwmB316
Cla020625MELO3C016795.2Melon (DHL92) v3.6.1medwmB512
Cla020625Bhi09G002685Wax gourdwgowmB623
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla020625Silver-seed gourdcarwmB0173
Cla020625Silver-seed gourdcarwmB0404
Cla020625Silver-seed gourdcarwmB0769
Cla020625Cucumber (Chinese Long) v3cucwmB138
Cla020625Cucumber (Chinese Long) v3cucwmB332
Cla020625Cucumber (Chinese Long) v3cucwmB619
Cla020625Watermelon (97103) v2wmwmbB188
Cla020625Watermelon (97103) v2wmwmbB222
Cla020625Wax gourdwgowmB329
Cla020625Watermelon (97103) v1wmwmB059
Cla020625Cucumber (Gy14) v1cgywmB424
Cla020625Cucumber (Gy14) v1cgywmB631
Cla020625Cucumber (Gy14) v1cgywmB709
Cla020625Cucurbita maxima (Rimu)cmawmB115
Cla020625Cucurbita maxima (Rimu)cmawmB159
Cla020625Cucurbita maxima (Rimu)cmawmB440
Cla020625Cucurbita maxima (Rimu)cmawmB627
Cla020625Cucurbita maxima (Rimu)cmawmB758
Cla020625Cucurbita maxima (Rimu)cmawmB823
Cla020625Cucurbita moschata (Rifu)cmowmB145
Cla020625Cucurbita moschata (Rifu)cmowmB434
Cla020625Cucurbita moschata (Rifu)cmowmB618
Cla020625Cucurbita moschata (Rifu)cmowmB753
Cla020625Cucurbita moschata (Rifu)cmowmB813
Cla020625Melon (DHL92) v3.5.1mewmB232
Cla020625Melon (DHL92) v3.5.1mewmB317
Cla020625Watermelon (Charleston Gray)wcgwmB412
Cla020625Cucumber (Chinese Long) v2cuwmB126
Cla020625Cucumber (Chinese Long) v2cuwmB591
Cla020625Cucurbita pepo (Zucchini)cpewmB108
Cla020625Cucurbita pepo (Zucchini)cpewmB480
Cla020625Cucurbita pepo (Zucchini)cpewmB559
Cla020625Cucurbita pepo (Zucchini)cpewmB765
Cla020625Cucurbita pepo (Zucchini)cpewmB797
Cla020625Bottle gourd (USVL1VR-Ls)lsiwmB256
Cla020625Bottle gourd (USVL1VR-Ls)lsiwmB480
Cla020625Cucumber (Gy14) v2cgybwmB119
Cla020625Cucumber (Gy14) v2cgybwmB295
Cla020625Cucumber (Gy14) v2cgybwmB554
Cla020625Melon (DHL92) v3.6.1medwmB227
Cla020625Melon (DHL92) v3.6.1medwmB311