CSPI04G24570 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G24570
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 22276825 .. 22277897 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTTTCTGAAGGGACAAATAGGGTATTTTCCAAATTCCTACTTGTACATGGATTGGTAGAAGAGGGAAAACGCAGAAGAGAAGAAAAGAGAAGAGTCAATATGGATATGCTACAACAAATGCTATACATAGCCTTAAAGTGACCCTCTGTCTTCAGAGATTGAAGGGACTGAAAGCTAGAAAGAAAAGGAAGAATGGAAGAAAGAATATTAAAAAGGATTCTGCTGAAAAGGAAAAGTTGCCGCGTCTCGTCTGCTGTGTTGCTATTTTGCAGGTTGTATACTCAATTGCATTCATTTAAGCTTCTACTTTTCTTTTATCCTTCTTTACTGCGTTGCACTGCCATACAAAGCCATGTGACTTTTCCCTCCAAGTAATCTAAGAACACCATTGTTACGAAGTAAGTACCTGGGTTTCTTCTTCTATCTCCCCATTTCCTCCCTCCATGGAAGCTCGACTGCTTCTGTTAATGGCAGTTATCACACTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGCTGTTGCCTTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCGCCCCCACCGCGGAGTCACTTGTTCAATGCTCTCTTTGCAAGCAAGAGAAAAGTCCCCAACACTTGGGATCCAATCCACAATCGTTGAAGCTGTCTGGTTGTTTGAATCTTTAGGGAGGAATAGGAATATGGGATTATGAGGTCGGCTTCTGATCTGATTAGAGTATGAATTTCGGTTAAAATAGTGGTGTTGATTCTATTGGTAGACGTGGTCAGGTGGACTTTTGGTTTGCTTGCCTTCCTTCAGTTCGTGTATTCGGACATCTACTCGATCTCAGCCTTTTTCTGGGTGCAAACTTTATAGGGAAATGCTACCTATTTCTATCCCTTTTCTTTTTATCACAATCATTTTAGTAAAATTCAATTAAATATAAAACCCTTTCCACAGATATCTTCTCCAAAATCTGTTTGTGTGGTGTGGCCATAGTATTTTTTCTTCTCTTTTGTGTCCAACTATCTCTGTAATCC

mRNA sequence

ATGGAAGCTCGACTGCTTCTGTTAATGGCAGTTATCACACTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGCTGTTGCCTTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCGCCCCCACCGCGGAGTCACTTGTTCAATGCTCTCTTTGCAAGCAAGAGAAAAGTCCCCAACACTTGGGATCCAATCCACAATCGTTGA

Coding sequence (CDS)

ATGGAAGCTCGACTGCTTCTGTTAATGGCAGTTATCACACTTCTGGTCTCTGGTGATAACAAAGCGACGATGGGGGCTGCTGCTGTTGCCTTTATCGATCAACATCCGTTATCCAATATGCAGGAGAAGCACAGGAAACATCTGCAGTTGCTGTCGTCGCCCCCACCGCGGAGTCACTTGTTCAATGCTCTCTTTGCAAGCAAGAGAAAAGTCCCCAACACTTGGGATCCAATCCACAATCGTTGA
Homology
[Close]
BLAST of CSPI04G24570 vs. TrEMBL
Match: A0A0A0KZW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60
          MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNALFASKRKVPNTWDPIHNR 82
          FNALFASKRKVPNTWDPIHNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

[Close]
BLAST of CSPI04G24570 vs. NCBI nr
Match: gi|700200087|gb|KGN55245.1| (hypothetical protein Csa_4G641770 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60
          MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNALFASKRKVPNTWDPIHNR 82
          FNALFASKRKVPNTWDPIHNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

The following BLAST results are available for this feature:
BLAST of CSPI04G24570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G24570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZW1_CUCSA1.6e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641770 PE=4 SV=1[more]
BLAST of CSPI04G24570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G24570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200087|gb|KGN55245.1|2.3e-37100.00hypothetical protein Csa_4G641770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G24570.1CSPI04G24570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G24570Cla020625Watermelon (97103) v1cpiwmB324
CSPI04G24570Csa4G641770Cucumber (Chinese Long) v2cpicuB181
CSPI04G24570MELO3C016795Melon (DHL92) v3.5.1cpimeB311
CSPI04G24570Lsi04G015090Bottle gourd (USVL1VR-Ls)cpilsiB291
CSPI04G24570MELO3C016795.2Melon (DHL92) v3.6.1cpimedB302
CSPI04G24570Cla97C05G102050Watermelon (97103) v2cpiwmbB316
CSPI04G24570Bhi09G002685Wax gourdcpiwgoB421
CSPI04G24570CmaCh09G002680Cucurbita maxima (Rimu)cmacpiB020
CSPI04G24570CmoCh09G002650Cucurbita moschata (Rifu)cmocpiB011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G24570Cucurbita pepo (Zucchini)cpecpiB112
CSPI04G24570Cucurbita pepo (Zucchini)cpecpiB494
CSPI04G24570Cucurbita pepo (Zucchini)cpecpiB566
CSPI04G24570Cucurbita pepo (Zucchini)cpecpiB784
CSPI04G24570Cucurbita pepo (Zucchini)cpecpiB832
CSPI04G24570Bottle gourd (USVL1VR-Ls)cpilsiB278
CSPI04G24570Bottle gourd (USVL1VR-Ls)cpilsiB316
CSPI04G24570Melon (DHL92) v3.6.1cpimedB266
CSPI04G24570Melon (DHL92) v3.6.1cpimedB276
CSPI04G24570Melon (DHL92) v3.6.1cpimedB317
CSPI04G24570Cucumber (Gy14) v2cgybcpiB074
CSPI04G24570Cucumber (Gy14) v2cgybcpiB169
CSPI04G24570Cucumber (Gy14) v2cgybcpiB276
CSPI04G24570Cucumber (Gy14) v2cgybcpiB324
CSPI04G24570Silver-seed gourdcarcpiB0211
CSPI04G24570Silver-seed gourdcarcpiB0353
CSPI04G24570Silver-seed gourdcarcpiB0445
CSPI04G24570Silver-seed gourdcarcpiB0807
CSPI04G24570Cucumber (Chinese Long) v3cpicucB206
CSPI04G24570Cucumber (Chinese Long) v3cpicucB212
CSPI04G24570Cucumber (Chinese Long) v3cpicucB239
CSPI04G24570Cucumber (Chinese Long) v3cpicucB248
CSPI04G24570Watermelon (97103) v2cpiwmbB271
CSPI04G24570Watermelon (97103) v2cpiwmbB339
CSPI04G24570Wax gourdcpiwgoB388
CSPI04G24570Wild cucumber (PI 183967)cpicpiB074
CSPI04G24570Wild cucumber (PI 183967)cpicpiB170
CSPI04G24570Cucumber (Gy14) v1cgycpiB121
CSPI04G24570Cucumber (Gy14) v1cgycpiB334
CSPI04G24570Cucumber (Gy14) v1cgycpiB521
CSPI04G24570Cucumber (Gy14) v1cgycpiB579
CSPI04G24570Cucurbita maxima (Rimu)cmacpiB132
CSPI04G24570Cucurbita maxima (Rimu)cmacpiB187
CSPI04G24570Cucurbita maxima (Rimu)cmacpiB476
CSPI04G24570Cucurbita maxima (Rimu)cmacpiB680
CSPI04G24570Cucurbita maxima (Rimu)cmacpiB810
CSPI04G24570Cucurbita maxima (Rimu)cmacpiB884
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB172
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB336
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB465
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB544
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB672
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB795
CSPI04G24570Cucurbita moschata (Rifu)cmocpiB864
CSPI04G24570Cucumber (Chinese Long) v2cpicuB175
CSPI04G24570Cucumber (Chinese Long) v2cpicuB208
CSPI04G24570Melon (DHL92) v3.5.1cpimeB270
CSPI04G24570Melon (DHL92) v3.5.1cpimeB280
CSPI04G24570Watermelon (Charleston Gray)cpiwcgB327
CSPI04G24570Watermelon (Charleston Gray)cpiwcgB350
CSPI04G24570Watermelon (97103) v1cpiwmB300