Cla020025 (gene) Watermelon (97103) v1

Overview
NameCla020025
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPre-mRNA splicing factor (AHRD V1 *-*- C4QX20_PICPG); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type
LocationChr2 : 24747606 .. 24748757 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGCTGGGAGCGCTCTGATTTCCCCATCATCTGCGAGTCTTGCCTCGGCGATAACCCCTACGTTCGCATGGTACGTTCATTCTTGGTTCTTCTATCTTATTTAACGTTAGTACCCCCAATCCCATGAGTTACTTTAATCCCATTGTTGAATTACGTTCAAAATTTCACAATTTATCACTTGAATGTTCGAATAAGTCCTTGAATTGTACTGCTCTTGATAATACTGTAAATTAATGTTGCTTGGTAGAACACGAACCCAGATGGTTTCTGTCAACCATTATGAATTTTATATGTTCATTAGCTTGAGATGTGTGGGAGAGCGATGGATGGATTATGGACATTAGAGTTGTGTTCTTTTGCAATTAATGTCTTAGTATTTGATTAAGGCATAACTTTTGATTAAATGAATGTGATATTTGACTGCAGACGAGAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTTTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGCCAGACATGTAGTAAGTTAAAAAATGTGTGTCAAGTTTGCCTTTTGGACCTTGAATATGGCTTACCAGTTCAAGTTCGAGACACTGCACTGTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGTATGCACTTTCTGCTGAAGCATTTCCTTTAATTATAGCATGATTACTCCTTGTAGTTATTGGTGAAATACATTTGGTGAGGATTAAAGTAATTGTAATTTTTCAATTTGATCGCTTTAACAGGTCTTTGCATCTTTGTTGTTGCTTTCTTGCTTTATGCTAATTCAGCTCAATGTTGACTGTGCAGGCTAGAGCTGGTATTGATTATGAGTCCTCATATGGAAAGGCACGACCAAACGATACAATTTTGAAGCTTCAACGAACCACACCGTATTACAAGAGGAACCGTGCACATGTTTGTAGTTTCTATATTAGGGGTGAATGCACCAGAGGTTCTGAATGCCCTTACAGACACGAGATGCCTGAAACTGGAGAGCTGTCCCAGCAAAATATTAAGGATCGTTATTATGGGTATGGTTGA

mRNA sequence

ATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGCTGGGAGCGCTCTGATTTCCCCATCATCTGCGAGTCTTGCCTCGGCGATAACCCCTACGTTCGCATGACGAGAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTTTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGCCAGACATGTAGTAAGTTAAAAAATGTGTGTCAAGTTTGCCTTTTGGACCTTGAATATGGCTTACCAGTTCAAGTTCGAGACACTGCACTGTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGCTAGAGCTGGTATTGATTATGAGTCCTCATATGGAAAGGCACGACCAAACGATACAATTTTGAAGCTTCAACGAACCACACCGTATTACAAGAGGAACCGTGCACATGTTTGTAGTTTCTATATTAGGGGTGAATGCACCAGAGGTTCTGAATGCCCTTACAGACACGAGATGCCTGAAACTGGAGAGCTGTCCCAGCAAAATATTAAGGATCGTTATTATGGGTATGGTTGA

Coding sequence (CDS)

ATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGCTGGGAGCGCTCTGATTTCCCCATCATCTGCGAGTCTTGCCTCGGCGATAACCCCTACGTTCGCATGACGAGAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTTTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGCCAGACATGTAGTAAGTTAAAAAATGTGTGTCAAGTTTGCCTTTTGGACCTTGAATATGGCTTACCAGTTCAAGTTCGAGACACTGCACTGTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGCTAGAGCTGGTATTGATTATGAGTCCTCATATGGAAAGGCACGACCAAACGATACAATTTTGAAGCTTCAACGAACCACACCGTATTACAAGAGGAACCGTGCACATGTTTGTAGTTTCTATATTAGGGGTGAATGCACCAGAGGTTCTGAATGCCCTTACAGACACGAGATGCCTGAAACTGGAGAGCTGTCCCAGCAAAATATTAAGGATCGTTATTATGGGTATGGTTGA

Protein sequence

MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPETGELSQQNIKDRYYGYG
Homology
[Close]
BLAST of Cla020025 vs. Swiss-Prot
Match: C3H40_ORYSJ (Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 4.9e-113
Identity = 187/200 (93.50%), Postives = 193/200 (96.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM RA+YDKECKIC RPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+INSNDAIP+SDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDY+SS+GKARPNDTILKLQRT PYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. Swiss-Prot
Match: C3H4_ARATH (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 4.1e-112
Identity = 185/200 (92.50%), Postives = 195/200 (97.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMT+A+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++D+IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAG+DYESS+GK RPNDTILKLQRTTPYYKRNRAHVCSF+IRGECTRG+ECPYR
Sbjct: 121 EHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. Swiss-Prot
Match: C3H49_ORYSJ (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 4.6e-111
Identity = 185/200 (92.50%), Postives = 190/200 (95.00%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM RA+YDKECKIC RPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTALS NSNDAIP+SDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDY+SS GKAR NDTILKLQRT PYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. Swiss-Prot
Match: C3H25_ARATH (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.9e-109
Identity = 179/200 (89.50%), Postives = 191/200 (95.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMT+A+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++D+IPKSDVNRE+FAE
Sbjct: 61  DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREFFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRK RAG+DYESS+GK RPNDTI  LQRTTPYYKRNRAH+CSF+IRGECTRG ECPYR
Sbjct: 121 EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. Swiss-Prot
Match: C3H53_ARATH (Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana GN=At5g07060 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.4e-90
Identity = 149/193 (77.20%), Postives = 169/193 (87.56%), Query Frame = 1 

Query: 7   RDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKK 66
           RD  ADGWE +DFPI CESC GDNPY+RMTRADYDKECKIC+RPFT FRWRPGR+AR+KK
Sbjct: 4   RDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGRNARFKK 63

Query: 67  TEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKA 126
           TEICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+INS+ ++P S VNREYFA+EHD K 
Sbjct: 64  TEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFADEHDPKT 123

Query: 127 RAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPET 186
           RAG+DYESS+GK +PNDTILKLQR TP Y++NR  +CSFY  G+C RG+EC +RHEMPET
Sbjct: 124 RAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPET 183

Query: 187 GELSQQNIKDRYY 200
           GELS QNI+DRYY
Sbjct: 184 GELSHQNIRDRYY 196

[Close]
BLAST of Cla020025 vs. TrEMBL
Match: A0A0A0LGN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036090 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 1.5e-116
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. TrEMBL
Match: A0A124SHZ1_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd_010540 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.5e-113
Identity = 191/200 (95.50%), Postives = 199/200 (99.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD+EADGWERSDFPIICESCLGDNPY+RMT+A+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMP TGELSQQNIKDRYYG
Sbjct: 181 HEMPVTGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. TrEMBL
Match: F6GUV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05990 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.5e-113
Identity = 191/201 (95.02%), Postives = 199/201 (99.00%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DAR+KKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESS+GK RPNDTILKLQRTTPYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSFGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGY 202
           HEMP TGELSQQNIKDRYYG+
Sbjct: 181 HEMPITGELSQQNIKDRYYGW 201

[Close]
BLAST of Cla020025 vs. TrEMBL
Match: A0A0B0N799_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02098 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.0e-113
Identity = 190/200 (95.00%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD EADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGK RPNDTILKLQRTTPYYKRNRAH+CSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPE GELSQQNIKDRYYG
Sbjct: 181 HEMPEAGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. TrEMBL
Match: A0A0D2RFW1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G031000 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.0e-113
Identity = 190/200 (95.00%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD EADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGK RPNDTILKLQRTTPYYKRNRAH+CSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPE GELSQQNIKDRYYG
Sbjct: 181 HEMPEAGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. NCBI nr
Match: gi|778667275|ref|XP_011648901.1| (PREDICTED: zinc finger CCCH domain-containing protein 40 [Cucumis sativus])

HSP 1 Score: 426.8 bits (1096), Expect = 2.1e-116
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. NCBI nr
Match: gi|659069955|ref|XP_008452614.1| (PREDICTED: zinc finger CCCH domain-containing protein 40-like [Cucumis melo])

HSP 1 Score: 426.8 bits (1096), Expect = 2.1e-116
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPETGELSQQNIKDRYYG
Sbjct: 181 HEMPETGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. NCBI nr
Match: gi|976927277|gb|KVI11053.1| (Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus])

HSP 1 Score: 416.8 bits (1070), Expect = 2.2e-113
Identity = 191/200 (95.50%), Postives = 199/200 (99.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD+EADGWERSDFPIICESCLGDNPY+RMT+A+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMP TGELSQQNIKDRYYG
Sbjct: 181 HEMPVTGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. NCBI nr
Match: gi|823139563|ref|XP_012469642.1| (PREDICTED: zinc finger CCCH domain-containing protein 40-like [Gossypium raimondii])

HSP 1 Score: 416.4 bits (1069), Expect = 2.9e-113
Identity = 190/200 (95.00%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD EADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGK RPNDTILKLQRTTPYYKRNRAH+CSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPE GELSQQNIKDRYYG
Sbjct: 181 HEMPEAGELSQQNIKDRYYG 200

[Close]
BLAST of Cla020025 vs. NCBI nr
Match: gi|728829237|gb|KHG08680.1| (hypothetical protein F383_02098 [Gossypium arboreum])

HSP 1 Score: 416.4 bits (1069), Expect = 2.9e-113
Identity = 190/200 (95.00%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD EADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGK RPNDTILKLQRTTPYYKRNRAH+CSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYG 201
           HEMPE GELSQQNIKDRYYG
Sbjct: 181 HEMPEAGELSQQNIKDRYYG 200

The following BLAST results are available for this feature:
BLAST of Cla020025 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H40_ORYSJ4.9e-11393.50Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN... [more]
C3H4_ARATH4.1e-11292.50Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g0736... [more]
C3H49_ORYSJ4.6e-11192.50Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN... [more]
C3H25_ARATH1.9e-10989.50Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g295... [more]
C3H53_ARATH3.4e-9077.20Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana GN=At5g070... [more]
BLAST of Cla020025 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGN2_CUCSA1.5e-11699.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036090 PE=4 SV=1[more]
A0A124SHZ1_CYNCS1.5e-11395.50Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd... [more]
F6GUV0_VITVI1.5e-11395.02Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05990 PE=4 SV=... [more]
A0A0B0N799_GOSAR2.0e-11395.00Uncharacterized protein OS=Gossypium arboreum GN=F383_02098 PE=4 SV=1[more]
A0A0D2RFW1_GOSRA2.0e-11395.00Uncharacterized protein OS=Gossypium raimondii GN=B456_003G031000 PE=4 SV=1[more]
BLAST of Cla020025 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778667275|ref|XP_011648901.1|2.1e-11699.50PREDICTED: zinc finger CCCH domain-containing protein 40 [Cucumis sativus][more]
gi|659069955|ref|XP_008452614.1|2.1e-11699.50PREDICTED: zinc finger CCCH domain-containing protein 40-like [Cucumis melo][more]
gi|976927277|gb|KVI11053.1|2.2e-11395.50Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus][more]
gi|823139563|ref|XP_012469642.1|2.9e-11395.00PREDICTED: zinc finger CCCH domain-containing protein 40-like [Gossypium raimond... [more]
gi|728829237|gb|KHG08680.1|2.9e-11395.00hypothetical protein F383_02098 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0000974 Prp19 complex
cellular_component GO:0071006 U2-type catalytic step 1 spliceosome
cellular_component GO:0071007 U2-type catalytic step 2 spliceosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0036002 pre-mRNA binding
molecular_function GO:0017070 U6 snRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020025Cla020025.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 157..183
score: 8.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 157..184
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 159..182
score: 1.8
NoneNo IPR availablePANTHERPTHR14089CELL CYCLE CONTROL PROTEINcoord: 1..200
score: 5.6E
NoneNo IPR availablePANTHERPTHR14089:SF6PRE-MRNA-SPLICING FACTOR RBM22coord: 1..200
score: 5.6E