CSPI02G05290 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G05290
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPre-mRNA-splicing factor RBM22
LocationChr2 : 3758302 .. 3762836 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAAAGTAATTGAAAAATATAGGAGAGAGGTTTCCTAATTCTTTTGGGGCGTCAAAATATAATAATAACAAAAAGATTTTTAGGGTTTTCGTTATACTTCGTTTGTGCAGCCGTGGTGAGTGGTACTCCCTCTCGCTCCTCCATCTGCTCACCTGACGTTCGTCGTCCGCCGCGCCGTCGTCGTTCGTCCTCCGTCGCGCCGTCCCGCGTTTGCCTTTTGCGGCATCTCTGTTTTCCTCGTAAGTCACTATACTCCTCGCCTTCTTTTTTCTTTCGTCTACCAGCCTCACCACGACCGTAGATCTAGAATCTCCAGTAGATTTTATTGTTTGTTTGTCCTTTAATCTAATTTCTGAAATCATTGAATTTATCCTTTAATCTTTCATTTCGTTTGTTCTCTGAGATGATATACCCAGGGTTTTGATTTACATGTGCATTTAATTCTGTTCTCTGTGACGTTTATTGGAAGAATTAGGTTCGGGTTATTAAGTAAAATGTTTAAATCTATAATTTGCATATTCATGGGGTGCTAATGGAGTATTTTATGTAATTTTCTTGTAGTTTTTCTGATAACCGGCTCTTCCTCCCATGGCTATGTCGATAATTGAGTTTGAAGGCTGACTTATTGTTTGGTGGGGATTTCTGAATAGTTCATTGATTTATTGAAAGTTCCATTTAAGGCAACAAGGTCAGAGTTGGGCTCAACTAGGATTTTCCATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGGTGGGAGCGCTCTGATTTTCCCATCATCTGCGAGTCTTGCCTTGGCGATAACCCCTACGTTCGCATGGTACGCTTGTTCTTGGTTCTTCTATATTATTTAATGTTAGTACCCCTTACGCCATGAGTTACTTTGATTTTACTCTTGAATTACGTTCAGAATTTCACAATTAATCACTTGAATGTTTGAATAAGTCCTTGAATTGTACGGTCCTTGCTCTGTGATAATACTATGAACTAGTGTAATGGGTAAAAAACACTAATCTATATTGTTTTTGTGTATGGGGGGGATGGATGGCAATGAATGTATATTGGAATTTTGTTTTCTTTTGCAATTAATGTCTTATTATTTGATTAAGGCATAAATTTTGACTGCAGACGAAAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTGTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGTCAGACATGTAGTAAGTTAAAAAATGTATGTCAAGTTTGCCTTTTGGATCTTGAATATGGCTTACCAGTTCAAGTTCGAGACACTGCACTCTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGTATGTACTTTCTGTTGAAGTGTTTCTTTTAACAATATCCTGATTACTCCTTGTAGTTATTGGTGAATACTTTTGGTGAGGACTAAAGTGTTGTAAAGTTTCAATTCAATCACTTTGCATCTTTGTTGTTACTTGATTTATGCTAATTCAGTTCAATGTTGACCATGCAGGCTAGAGCTGGTATCGATTATGAGTCCTCATATGGAAAGGCACGACCAAACGATACTATTTTGAAGCTTCAACGAACCACACCATACTACAAGAGGAATCGGGCACATGTTTGTAGTTTTTATATTAGGGGTGAATGCACCAGAGGTTCTGAATGCCCTTATCGACACGAGATGCCTGAAACTGGAGAGTTGTCCCAACAAAATATCAAGGATCGTTACTATGGGTATGGTTGATCTATTCCTTTGAAAGATTAGATGTGTTTAAATCATCTTTCATTTGTTTGCATATTTTAAGATTTTTTTAGCTTATATCATATGAAGTATAGTCTTCCAGAAGTAATTATTTGTTGGAGAGCAAGGATAATTGCTCAGTTATTTGTGCACAAACAATCGATACGAGGCTCTGTTGAGAATGGTATCTCTATTTATTTTTGCTCCATGTTTAAAGTGCTTGTGCCATGCATTGCTTGCTCATTGAGCAACTTATGTATGGGAAGGGATGGATGAAGGTAAGGGGTCTCACTTGATTAGATGGGAGAGTTTTGGGAGGTTGGTTTACTTGGGGCCTGGGGGCCTGGGGGCCTTGAAATAGGGAATTTAGGGATCTGTAACAAAGCTTTATTAGCCAATGGTTGAGACATTTTTCCTTTGAACCCAACTCACTTTGGCACAAGATTATTGTAAGTAAGTTTGGGCCTTATACTATTGACTGGCTGTTGGGTGGGGTCAAAGTCACTTATCGGAATTTATGGGAAGATATTTCTTGTGGGCTTCCTTCTTTCGCTCACTTGGCTCATTGTGTGGTGAGGGAGAGGAAAGAAATGTAGTTCCTGGAGGATAATTAGGTGGATCGGGTTCCTTTTGCTCTGCATTTCCTTGTCTTTTTCTATTTTCTTCCCTTAAAGACAGTAGTTTTTTTATTTTTTCTGGTTGAGCATGGAGCTTTATTTCCTTTTCATTTGTGTTTTGCAATTCCTTTTTTCGTTATTTGTTGTTTTCTTCTCCTATTTGTGAATCTATTTTTTTAATCTTTGGAGGATTAGATTCCGAGGAAAGTGAAATTTTACACCTAGCAAGTGTTACATGGCTGTGTTAACACTTTGGATCAGCTTGTGAGAAAGTTGCTTTCGTTAGTTGGCTTGTTTTGTTGTACTCTATCGAAAGGCGCGGGAAGACTTGGATTACATTCTTTGGAGATTTGAGTTTAAAAATTCCCTCTAGAATAAATTTTAAACTTCTGGCATTTTGCTTGCTTGACAACAGGACATTAGTTGTTGATTGGGGAGCCCCCCTCCATCATTTAGGGTTTGTGTAAAGGGTTGATTTTGTATGGTTTGCTGGGATGTATTCTATTCTGTGGGACCTTTGGGGCATACAGAGTTGGAGAGAGAACCTAGTGAAGTTTGGTCCCTCGTTAGTATCACGTTACTTTCTGGACTTCAATTTTGAAGATCTTTTGTTGTTACTTTATTCGCCATTTCCTATAGTTGGAGCCCTTTCCTTTAAGGAGGCTTTCTTTTGTGGGCTTGACATTATGCTTATGTATTACTCTTTCATCTTTTCTCAATAAAAAAGAAAAGAAGGTTACATGCTTATTATATTTCATTCTCACATTTCATGTTAATAATGAGATTACTGCCATTTAGAATGAAGAGATATATTACCAACTTTCTTATCAATACCTCAGGGTTAACGATCCGGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCCCTGGAACCGCCAGAAGATGAGAGTATTAGAACCTTGTATGTGGGCGGACTTGACGCTCGAGTCAGCGAGCAAGATCTTCGAGATAACTTTTACGCTCATGGCGAAATTGAATCTATCAGAATGGTGCTACAACGTGCATGCGCTTTTGTAACCTACACCACCAGAGAAGGTGCAGAAAAGGCTGCAGAAGAGCTTTCTAACAAGCTCGTAATTAGGGGCCTTAGGTTGAAATTGATGTGGGGCAGACCTCAAGCACCAAAAGCCGAGATAGAAGGTTCTGATGAAGCAAAACAAGCTGCCGTGGCTCACAGCGGAATGTTGCCGCGAGCAGTTATCTCGCAGCAGCACAACCAATTACACCCTCCGGGAACCCATGACCAACCTCAAGCTATGCACTACTTCAATATTCCACCTCCACCACCTCAACAGGAGAGAGCATTCTACCCATCAATGGACCCTCAAAGAATGGGAGCTCTGGTTTCGACTCACGATGCAGGGATGCCCCCTAATGGACCTACAGGTTCAACCGAAGCTAGACCCGGTTCTGACAAACAACACCAACACCAACACCAACAGGGACATCAATTTCCCTATCACGCAATGCACCCACCACCACCTGCACAATATCAACAGCAATTTTATCCTCCGCCGCCACCATATGGTTATGTACAACATTATCCACCATATCCTCCTTATCATTCAGGCATGCCACCACCGCCGCAGTCCCAAACCCAGCCCCATCCTCCTTCAGGTTCCCAGCAATATCAGCAGCAGCATTCTGCACCACCAAGCTCAGCCCCTCTGTCCCATGGAGGAGCATCTTCCGGTTCAGCACCGCTGGGATCAACACCTTCAGCGTCTGCTCCATCTTCAACATCTGCTGAACCTGCATCATCGTAGATCCAGACTCTGAGGCGCAGGGCTGTTGTCGAACTTCCAAACTGGACGGGGAGGCACAGAAAGCCGGGAGGGAAGGTGTGTTAGGCATTCCCTGTTCATATCTTGACTTTGTTGTCGTGACTTTTGATATGTAATATTATAGTTTTTACTGGAAATGGGATGAGCTATTTGGATTTGTCACTTTCATTCCCTCAGTTTCTTCCTTAGTTTAAATCCAAAATGAAATGGAAGTTAAATTCCTTTGTTACAAACTGTTGTTCAAAAGTTCATTATTACTTTTATTTTGTTGATTATTAGTAACAATCTAACAACATTTTCTTT

mRNA sequence

ATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGGTGGGAGCGCTCTGATTTTCCCATCATCTGCGAGTCTTGCCTTGGCGATAACCCCTACGTTCGCATGACGAAAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTGTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGTCAGACATGTAGTAAGTTAAAAAATGTATGTCAAGTTTGCCTTTTGGATCTTGAATATGGCTTACCAGTTCAAGTTCGAGACACTGCACTCTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGCTAGAGCTGGTATCGATTATGAGTCCTCATATGGAAAGGCACGACCAAACGATACTATTTTGAAGCTTCAACGAACCACACCATACTACAAGAGGAATCGGGCACATGTTTGTAGTTTTTATATTAGGGGTGAATGCACCAGAGGTTCTGAATGCCCTTATCGACACGAGATGCCTGAAACTGGAGAGTTGTCCCAACAAAATATCAAGGATCGTTACTATGGGGTTAACGATCCGGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCCCTGGAACCGCCAGAAGATGAGAGTATTAGAACCTTGTATGTGGGCGGACTTGACGCTCGAGTCAGCGAGCAAGATCTTCGAGATAACTTTTACGCTCATGGCGAAATTGAATCTATCAGAATGGTGCTACAACGTGCATGCGCTTTTGTAACCTACACCACCAGAGAAGGTGCAGAAAAGGCTGCAGAAGAGCTTTCTAACAAGCTCGTAATTAGGGGCCTTAGGTTGAAATTGATGTGGGGCAGACCTCAAGCACCAAAAGCCGAGATAGAAGGTTCTGATGAAGCAAAACAAGCTGCCGTGGCTCACAGCGGAATGTTGCCGCGAGCAGTTATCTCGCAGCAGCACAACCAATTACACCCTCCGGGAACCCATGACCAACCTCAAGCTATGCACTACTTCAATATTCCACCTCCACCACCTCAACAGGAGAGAGCATTCTACCCATCAATGGACCCTCAAAGAATGGGAGCTCTGGTTTCGACTCACGATGCAGGGATGCCCCCTAATGGACCTACAGGTTCAACCGAAGCTAGACCCGGTTCTGACAAACAACACCAACACCAACACCAACAGGGACATCAATTTCCCTATCACGCAATGCACCCACCACCACCTGCACAATATCAACAGCAATTTTATCCTCCGCCGCCACCATATGGTTATGTACAACATTATCCACCATATCCTCCTTATCATTCAGGCATGCCACCACCGCCGCAGTCCCAAACCCAGCCCCATCCTCCTTCAGGTTCCCAGCAATATCAGCAGCAGCATTCTGCACCACCAAGCTCAGCCCCTCTGTCCCATGGAGGAGCATCTTCCGGTTCAGCACCGCTGGGATCAACACCTTCAGCGTCTGCTCCATCTTCAACATCTGCTGAACCTGCATCATCGTAG

Coding sequence (CDS)

ATGGCGCATCGGTTGCTAAGGGATCTGGAAGCTGATGGGTGGGAGCGCTCTGATTTTCCCATCATCTGCGAGTCTTGCCTTGGCGATAACCCCTACGTTCGCATGACGAAAGCTGATTATGATAAAGAATGCAAAATTTGCACACGCCCATTTACAGTGTTCAGGTGGAGGCCTGGACGTGATGCTAGATATAAGAAAACAGAGATTTGTCAGACATGTAGTAAGTTAAAAAATGTATGTCAAGTTTGCCTTTTGGATCTTGAATATGGCTTACCAGTTCAAGTTCGAGACACTGCACTCTCTATCAACTCCAATGATGCTATTCCCAAGAGCGATGTGAATAGGGAATATTTTGCCGAGGAGCATGATCGAAAGGCTAGAGCTGGTATCGATTATGAGTCCTCATATGGAAAGGCACGACCAAACGATACTATTTTGAAGCTTCAACGAACCACACCATACTACAAGAGGAATCGGGCACATGTTTGTAGTTTTTATATTAGGGGTGAATGCACCAGAGGTTCTGAATGCCCTTATCGACACGAGATGCCTGAAACTGGAGAGTTGTCCCAACAAAATATCAAGGATCGTTACTATGGGGTTAACGATCCGGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAGATGCCTTCCCTGGAACCGCCAGAAGATGAGAGTATTAGAACCTTGTATGTGGGCGGACTTGACGCTCGAGTCAGCGAGCAAGATCTTCGAGATAACTTTTACGCTCATGGCGAAATTGAATCTATCAGAATGGTGCTACAACGTGCATGCGCTTTTGTAACCTACACCACCAGAGAAGGTGCAGAAAAGGCTGCAGAAGAGCTTTCTAACAAGCTCGTAATTAGGGGCCTTAGGTTGAAATTGATGTGGGGCAGACCTCAAGCACCAAAAGCCGAGATAGAAGGTTCTGATGAAGCAAAACAAGCTGCCGTGGCTCACAGCGGAATGTTGCCGCGAGCAGTTATCTCGCAGCAGCACAACCAATTACACCCTCCGGGAACCCATGACCAACCTCAAGCTATGCACTACTTCAATATTCCACCTCCACCACCTCAACAGGAGAGAGCATTCTACCCATCAATGGACCCTCAAAGAATGGGAGCTCTGGTTTCGACTCACGATGCAGGGATGCCCCCTAATGGACCTACAGGTTCAACCGAAGCTAGACCCGGTTCTGACAAACAACACCAACACCAACACCAACAGGGACATCAATTTCCCTATCACGCAATGCACCCACCACCACCTGCACAATATCAACAGCAATTTTATCCTCCGCCGCCACCATATGGTTATGTACAACATTATCCACCATATCCTCCTTATCATTCAGGCATGCCACCACCGCCGCAGTCCCAAACCCAGCCCCATCCTCCTTCAGGTTCCCAGCAATATCAGCAGCAGCATTCTGCACCACCAAGCTCAGCCCCTCTGTCCCATGGAGGAGCATCTTCCGGTTCAGCACCGCTGGGATCAACACCTTCAGCGTCTGCTCCATCTTCAACATCTGCTGAACCTGCATCATCGTAG
Homology
[Close]
BLAST of CSPI02G05290 vs. Swiss-Prot
Match: C3H40_ORYSJ (Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1)

HSP 1 Score: 670.2 bits (1728), Expect = 1.8e-191
Identity = 356/496 (71.77%), Postives = 387/496 (78.02%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM +A+YDKECKIC RPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+INSNDAIP+SDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDY+SS+GKARPNDTILKLQRT PYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEMPSL PP+DESIRTLY+GGL+ R++
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD FYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEEL+NKLVI+G+RLKLMWG+
Sbjct: 241 EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGK 300

Query: 301 PQAPKAEIEGSDEA-KQAAVAHSGMLPRAVISQQH--NQLHPPGTHDQPQA---MHYFNI 360
           PQAPK E    DEA +Q  VAH GMLPRAVISQQ   +Q  PPG   Q QA    +YFNI
Sbjct: 301 PQAPKPE---DDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNI 360

Query: 361 PPPPPQQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQF 420
            P PP  ER  YPSMDPQRMGALV + +    P GP  + +A+  S              
Sbjct: 361 -PAPPGAERTLYPSMDPQRMGALVKSQEGDGKP-GPQQAAQAQASSS------------- 420

Query: 421 PYHAMHPPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPP-----PPQSQTQPHPPSG 480
                          Q YP PP Y + Q+ P YPPY   MPP     PP  Q  P+ P  
Sbjct: 421 -------------SGQSYPMPPQYYHGQYPPYYPPYGGYMPPPRMPYPPPPQYPPYQPML 465

Query: 481 SQQYQQQHSAPPSSAP 486
           +   Q Q S+    AP
Sbjct: 481 ATPAQSQASSSQQPAP 465

[Close]
BLAST of CSPI02G05290 vs. Swiss-Prot
Match: C3H49_ORYSJ (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 1.7e-189
Identity = 357/491 (72.71%), Postives = 387/491 (78.82%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD +ADGWERSDFPIICESCLGDNPYVRM +A+YDKECKIC RPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTALS NSNDAIP+SDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDY+SS GKAR NDTILKLQRT PYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL+KAGEMPSL PP+DESIRTLY+GGLD+RV+
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD FYAHGEIE+IRMVLQRACAFVTYTTREGAEKAAEEL+NKLVI+G+RLKLMWG+
Sbjct: 241 EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK 300

Query: 301 PQAPKAEIEGSDEA-KQAAVAHSGMLPRAVISQQH--NQLHPPGTHDQPQ---AMHYFNI 360
           PQAPK E    DEA +Q  VAH GMLPRAVISQQ   +Q  PPG   Q Q   A +YFNI
Sbjct: 301 PQAPKPE---EDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQPASASYYFNI 360

Query: 361 PPPPPQQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQF 420
            P PP  ER  YPSMDPQRMGALV + +     +G  G  +A  G     Q     G  +
Sbjct: 361 -PAPPAAERTLYPSMDPQRMGALVESQEG----DGKPGPQQAGQG-----QASSSSGQSY 420

Query: 421 PYHAMHPPPPAQYQQQ---FYPP-----PPPYGYVQHYPPYPPYHSGMPPPPQSQTQ--P 476
           P     PPPP  +  Q   +YPP     PPP    Q  P YP Y   + PP QSQ     
Sbjct: 421 P----EPPPPYYHGGQYPPYYPPYGGYMPPPRMPYQQPPQYPAYQPMLAPPAQSQASSLQ 474

[Close]
BLAST of CSPI02G05290 vs. Swiss-Prot
Match: C3H25_ARATH (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 1.8e-183
Identity = 343/515 (66.60%), Postives = 394/515 (76.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++D+IPKSDVNRE+FAE
Sbjct: 61  DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREFFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRK RAG+DYESS+GK RPNDTI  LQRTTPYYKRNRAH+CSF+IRGECTRG ECPYR
Sbjct: 121 EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEM +LE PED+SIRTLYVGGL++RV 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++ ++ACAFVTYTTREGAEKAAEELSN+LV+ G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPP-PP 360
           PQ PK + +GS++  Q +VAHSG+LPRAVISQQ NQ  PP     P   +Y + PPP PP
Sbjct: 301 PQVPKPDQDGSNQ--QGSVAHSGLLPRAVISQQQNQ--PP-----PMLQYYMHPPPPQPP 360

Query: 361 QQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAM 420
            Q+R FYPSMDPQRMGA+ S+ ++G   +   G++ +               +  P H  
Sbjct: 361 HQDRPFYPSMDPQRMGAVSSSKESGSSTSDNRGASSS--------------SYTMPPHGH 420

Query: 421 HPPPPAQYQQQFYPPPPPYGYVQ-HYPPYPPYHSG--------MPPPPQSQTQPHPPSGS 480
           +P      Q Q YPPP   GY+Q  Y  YPPYH G         P  P   ++P+PP  S
Sbjct: 421 YP------QHQPYPPPSYGGYMQPPYQQYPPYHHGHSQQADHDYPQQPGPGSRPNPPHPS 480

Query: 481 QQYQQQHSAPPSSAPLSHGGASSGSAPLGSTPSAS 506
                  + PP S   +  G+S  SA    T  +S
Sbjct: 481 ----SVSAPPPDSVSAAPSGSSQQSADAAVTTGSS 482

[Close]
BLAST of CSPI02G05290 vs. Swiss-Prot
Match: C3H4_ARATH (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 1.8e-180
Identity = 340/519 (65.51%), Postives = 391/519 (75.34%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++D+IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAG+DYESS+GK RPNDTILKLQRTTPYYKRNRAHVCSF+IRGECTRG+ECPYR
Sbjct: 121 EHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++R+ 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDESIKTLYVGGLNSRIL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++  +ACAFVTYT+REGAEKAA+ELSN+LVI G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
              PK + +G+++  Q  VAHSG+LPRAVISQQHN         QP  M  + + PPP  
Sbjct: 301 ---PKPDQDGANQ--QGGVAHSGLLPRAVISQQHN---------QPPPMQQYYMHPPPAN 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMH 420
           Q++ +YPSMDPQRMGA++ST +AG              GS  ++       +  P H  +
Sbjct: 361 QDKPYYPSMDPQRMGAVISTQEAG--------------GSSTENNGASSSSYMMPPHQSY 420

Query: 421 PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQ--HS 480
           PPPP  Y       P PY        YPP H   P P Q      PP  +  Y QQ    
Sbjct: 421 PPPPYGYM------PSPY-----QQQYPPNHHHQPSPMQHYA---PPPAAYPYPQQPGPG 477

Query: 481 APPSSAPLSHGGASSGSAPLGS-TPSASAPSSTSAEPAS 517
           + P+ +P +    S  SAP GS  PS S+  +     A+
Sbjct: 481 SRPAPSPTAVSAISPDSAPAGSGAPSGSSQQAPDVSTAT 477

[Close]
BLAST of CSPI02G05290 vs. Swiss-Prot
Match: C3H53_ARATH (Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana GN=At5g07060 PE=2 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 9.0e-119
Identity = 234/432 (54.17%), Postives = 281/432 (65.05%), Query Frame = 1 

Query: 7   RDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKK 66
           RD  ADGWE +DFPI CESC GDNPY+RMT+ADYDKECKIC+RPFT FRWRPGR+AR+KK
Sbjct: 4   RDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGRNARFKK 63

Query: 67  TEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKA 126
           TEICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+INS+ ++P S VNREYFA+EHD K 
Sbjct: 64  TEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFADEHDPKT 123

Query: 127 RAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPET 186
           RAG+DYESS+GK +PNDTILKLQR TP Y++NR  +CSFY  G+C RG+EC +RHEMPET
Sbjct: 124 RAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPET 183

Query: 187 GELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVSEQDLRD 246
           GELS QNI+DRYY VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D
Sbjct: 184 GELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHD 243

Query: 247 NFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGRPQAPKA 306
                               F  Y   E     AE+                      K 
Sbjct: 244 -------------------HFYAYGEMESIRVMAED---------------------GKY 303

Query: 307 EIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQQERAFY 366
           +  GS++ +Q ++AH+G+     ISQQ NQ      H Q Q   Y+  PPPP   E + Y
Sbjct: 304 DQSGSNQQQQGSIAHTGL-----ISQQQNQ------HSQMQ--QYYMQPPPP--NEYSHY 356

Query: 367 PSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMHPPPPAQ 426
           PSMD QRMGA  ST ++               GS     ++    + +P       PP  
Sbjct: 364 PSMDTQRMGAAFSTQES--------------DGSSTSENNRAYSSYSYPM------PP-- 356

Query: 427 YQQQFYPPPPPY 439
              Q YP PPPY
Sbjct: 424 --HQPYPTPPPY 356

[Close]
BLAST of CSPI02G05290 vs. TrEMBL
Match: A0A0A0LGN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036090 PE=4 SV=1)

HSP 1 Score: 1042.7 bits (2695), Expect = 1.5e-301
Identity = 516/517 (99.81%), Postives = 516/517 (99.81%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
           PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ
Sbjct: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMH 420
           QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYH MH
Sbjct: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHPMH 420

Query: 421 PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP 480
           PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP
Sbjct: 421 PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP 480

Query: 481 PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS 518
           PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS
Sbjct: 481 PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS 517

[Close]
BLAST of CSPI02G05290 vs. TrEMBL
Match: A0A067KH26_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12812 PE=4 SV=1)

HSP 1 Score: 761.1 bits (1964), Expect = 8.5e-217
Identity = 399/517 (77.18%), Postives = 430/517 (83.17%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DAR+KK EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTAL INSND+IPKSDVNREYFAE
Sbjct: 61  DARFKKPEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHINSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESSYGK RPNDTILKLQRTTPYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAG+MPSLEPPEDESI+TLYVGGLDAR++
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGDMPSLEPPEDESIKTLYVGGLDARIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD FYAHGEIES++MV QRA AFVTYTTREGAEKAAEELSNKLVI+GLRLKLMWGR
Sbjct: 241 EQDLRDQFYAHGEIESVKMVPQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQ-AAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPP 360
           PQ PK E EG +EA+Q AA+AHSGMLPRAVISQQ NQLHPPGT DQPQ MHYFNI PPPP
Sbjct: 301 PQVPKPESEGPEEARQLAAMAHSGMLPRAVISQQQNQLHPPGTQDQPQTMHYFNI-PPPP 360

Query: 361 QQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAM 420
           Q ER FYPSMDPQRMGA+V + D    P+GP+GS E        +  + Q+  Q+PY  M
Sbjct: 361 QHERPFYPSMDPQRMGAVVPSQDGA--PSGPSGSGE--------NVLERQRAQQYPYEGM 420

Query: 421 HPPPPAQYQQQFYPPPPPYGYVQHYPPY----PPYHSGMPPPPQSQTQPHPPSGSQQYQQ 480
            PPP  QYQQQ Y   P YGY+   PPY    PPYHS +PPPP  Q           +Q 
Sbjct: 421 -PPPHGQYQQQLY---PSYGYMPAMPPYQQYPPPYHSAVPPPPAPQA---------SHQH 480

Query: 481 QHSAPPSSAPLSHGGASSGSAPLGSTPSASAPSSTSA 513
           QHS P S  P +    SSG  P    P + AP+S++A
Sbjct: 481 QHSVPSSRNPPA-PSVSSGPPP----PGSGAPTSSNA 488

[Close]
BLAST of CSPI02G05290 vs. TrEMBL
Match: A0A0D2RFW1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G031000 PE=4 SV=1)

HSP 1 Score: 755.4 bits (1949), Expect = 4.7e-215
Identity = 397/523 (75.91%), Postives = 424/523 (81.07%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD EADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAG+DYESSYGK RPNDTILKLQRTTPYYKRNRAH+CSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPE GELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLE PEDESI+TLYVGGLD R++
Sbjct: 181 HEMPEAGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEAPEDESIKTLYVGGLDKRIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRDNFYAHGEIESI+MVL +ACAFVTYTTREGAEKAAEELS+KLVI+GLRLKLMWG+
Sbjct: 241 EQDLRDNFYAHGEIESIKMVLDKACAFVTYTTREGAEKAAEELSSKLVIKGLRLKLMWGK 300

Query: 301 PQAPKAEIEGSDEAKQ-AAVAHSGMLPRAVISQQHNQLHP--PGTHDQPQAMHYFNIPPP 360
           PQAP+ E E SD ++Q AAVAHSGMLPRAVISQQ NQ  P  PG HDQP  M YFNIPPP
Sbjct: 301 PQAPRPESETSDGSRQQAAVAHSGMLPRAVISQQQNQFQPSGPGMHDQPPPMQYFNIPPP 360

Query: 361 PPQQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYH 420
           P Q +RA+YPSMDPQRMGALV + D            E +PGSDKQ Q QH     +PY 
Sbjct: 361 P-QMDRAYYPSMDPQRMGALVPSQDG-----------ENKPGSDKQ-QAQH-----YPYQ 420

Query: 421 AMHPPPPAQYQQQFYPPPPPYGYVQHYPPY---PPYHSGMPPPPQSQTQPHPPSGSQQYQ 480
            M PPPP QY  Q YPP   YGY+Q  PPY   PPYHS MPPP           G  Q+ 
Sbjct: 421 GMPPPPPGQYPHQHYPP---YGYMQPMPPYQQYPPYHSAMPPP----------RGPPQHY 480

Query: 481 QQHSAPPSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS 518
           Q    P  S P+S   ++S   P  ST S SAP      P  S
Sbjct: 481 QHPGPPRPSPPVSAPASTSAQPPPASTSSGSAPPPPPPAPVPS 492

[Close]
BLAST of CSPI02G05290 vs. TrEMBL
Match: A0A067KH31_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12817 PE=4 SV=1)

HSP 1 Score: 753.8 bits (1945), Expect = 1.4e-214
Identity = 396/517 (76.60%), Postives = 430/517 (83.17%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMT+ADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DAR+KKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTAL I+SND+IPKSDVNREYFAE
Sbjct: 61  DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHISSNDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESSYGK RPNDTILKLQRTTPYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDAR++
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD FYAHGEIES++MV QRA AFVTYTTREGAEKAAEELSN+LVI+GLRLKLMWGR
Sbjct: 241 EQDLRDQFYAHGEIESVKMVPQRAIAFVTYTTREGAEKAAEELSNRLVIKGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQ-AAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPP 360
           PQAPK E EG +E +Q AA+AHSGMLPRAV+SQQ N LHPPGT DQP  MHYFNI PPPP
Sbjct: 301 PQAPKPESEGPEEVRQLAAMAHSGMLPRAVVSQQQNHLHPPGTQDQPPPMHYFNI-PPPP 360

Query: 361 QQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAM 420
           Q ER FYPSMDPQRMGA+V + D    P+ P+GS E +   ++QH        Q+PY  M
Sbjct: 361 QHERTFYPSMDPQRMGAVVPSQDGA--PSVPSGSGENKNVLERQH------AQQYPYQGM 420

Query: 421 HPPPPAQYQQQFYPPPPPYGYVQHYPPY----PPYHSGMPPPPQSQTQPHPPSGSQQYQQ 480
            PPP  QYQQQ Y   P YGY+   PPY    PPYHS +PP P        P  SQQ+  
Sbjct: 421 -PPPHGQYQQQLY---PSYGYMPAMPPYQQYPPPYHSAVPPAPS-------PQASQQH-- 480

Query: 481 QHSAPPSSAPLSHGGASSGSAPLGSTPSASAPSSTSA 513
           QHS P S  P +    SSG  P    P + AP+S++A
Sbjct: 481 QHSVPSSRNPPA-PSVSSGPPP----PGSGAPTSSNA 490

[Close]
BLAST of CSPI02G05290 vs. TrEMBL
Match: A0A068TNM7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014993001 PE=4 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 3.0e-214
Identity = 396/502 (78.88%), Postives = 424/502 (84.46%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRD EADGWERSDFPIICESCLGD+PYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESSYGK RPNDTILKLQRTTPYYKRNRAHVCSFY+RG+CTRG ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGQCTRGLECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMP TGELSQQNIKDRYYGVNDPVA+KLLNKAGEMPSLEPPEDE+IRTLYVGGLDAR++
Sbjct: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDENIRTLYVGGLDARIT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD+FYAHGEIESI+MVLQRACAFV YTTREGAEKAAEEL+NKLVI+GLRLKL+WGR
Sbjct: 241 EQDLRDHFYAHGEIESIKMVLQRACAFVAYTTREGAEKAAEELANKLVIKGLRLKLLWGR 300

Query: 301 PQAPKAEIEGSDEAK-QAAVAHSGMLPRAVISQQHNQ-LHPPGTHDQPQAMHYFNIPPPP 360
           PQAPK E E SDEA+ QAAVAHSG+LPRAVISQQ NQ L PPGTHDQP AM YFNI PP 
Sbjct: 301 PQAPKPESEISDEARQQAAVAHSGLLPRAVISQQQNQPLQPPGTHDQPPAMPYFNI-PPQ 360

Query: 361 PQQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHA 420
           PQQERAFYPSMDPQRMGALV   D     +GP+GS + R G +KQHQ QH     + Y  
Sbjct: 361 PQQERAFYPSMDPQRMGALVPAQDGA--SSGPSGSGDNRSGPEKQHQGQH-----YAYPG 420

Query: 421 MHPPPPAQYQQQFYPP----PPPYGYVQHYPPYPPYHSGMPPPPQ---SQTQPHPPSGSQ 480
             PPP  Q+ QQ+YPP    PPP    Q YPPYP   S +PPPP    S + P P +G Q
Sbjct: 421 GPPPPQGQFYQQYYPPYGYMPPPPPPYQQYPPYPA--SMVPPPPMPTPSPSAPPPATGEQ 480

Query: 481 QYQQQHSAPPSSAPLSHGGASS 494
            + +  SA    A  S    SS
Sbjct: 481 HHARVPSASGEQAGTSQQMPSS 492

[Close]
BLAST of CSPI02G05290 vs. TAIR10
Match: AT2G29580.1 (AT2G29580.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 643.7 bits (1659), Expect = 1.0e-184
Identity = 343/515 (66.60%), Postives = 394/515 (76.50%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTE+CQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++D+IPKSDVNRE+FAE
Sbjct: 61  DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREFFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRK RAG+DYESS+GK RPNDTI  LQRTTPYYKRNRAH+CSF+IRGECTRG ECPYR
Sbjct: 121 EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEM +LE PED+SIRTLYVGGL++RV 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++ ++ACAFVTYTTREGAEKAAEELSN+LV+ G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPP-PP 360
           PQ PK + +GS++  Q +VAHSG+LPRAVISQQ NQ  PP     P   +Y + PPP PP
Sbjct: 301 PQVPKPDQDGSNQ--QGSVAHSGLLPRAVISQQQNQ--PP-----PMLQYYMHPPPPQPP 360

Query: 361 QQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAM 420
            Q+R FYPSMDPQRMGA+ S+ ++G   +   G++ +               +  P H  
Sbjct: 361 HQDRPFYPSMDPQRMGAVSSSKESGSSTSDNRGASSS--------------SYTMPPHGH 420

Query: 421 HPPPPAQYQQQFYPPPPPYGYVQ-HYPPYPPYHSG--------MPPPPQSQTQPHPPSGS 480
           +P      Q Q YPPP   GY+Q  Y  YPPYH G         P  P   ++P+PP  S
Sbjct: 421 YP------QHQPYPPPSYGGYMQPPYQQYPPYHHGHSQQADHDYPQQPGPGSRPNPPHPS 480

Query: 481 QQYQQQHSAPPSSAPLSHGGASSGSAPLGSTPSAS 506
                  + PP S   +  G+S  SA    T  +S
Sbjct: 481 ----SVSAPPPDSVSAAPSGSSQQSADAAVTTGSS 482

[Close]
BLAST of CSPI02G05290 vs. TAIR10
Match: AT1G07360.1 (AT1G07360.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 633.6 bits (1633), Expect = 1.0e-181
Identity = 340/519 (65.51%), Postives = 391/519 (75.34%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRD EADGWERSDFPIICESCLGDNPYVRMTKA+YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I+++D+IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAG+DYESS+GK RPNDTILKLQRTTPYYKRNRAHVCSF+IRGECTRG+ECPYR
Sbjct: 121 EHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++R+ 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDESIKTLYVGGLNSRIL 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQD+RD FYAHGEIESIR++  +ACAFVTYT+REGAEKAA+ELSN+LVI G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
              PK + +G+++  Q  VAHSG+LPRAVISQQHN         QP  M  + + PPP  
Sbjct: 301 ---PKPDQDGANQ--QGGVAHSGLLPRAVISQQHN---------QPPPMQQYYMHPPPAN 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMH 420
           Q++ +YPSMDPQRMGA++ST +AG              GS  ++       +  P H  +
Sbjct: 361 QDKPYYPSMDPQRMGAVISTQEAG--------------GSSTENNGASSSSYMMPPHQSY 420

Query: 421 PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQ--HS 480
           PPPP  Y       P PY        YPP H   P P Q      PP  +  Y QQ    
Sbjct: 421 PPPPYGYM------PSPY-----QQQYPPNHHHQPSPMQHYA---PPPAAYPYPQQPGPG 477

Query: 481 APPSSAPLSHGGASSGSAPLGS-TPSASAPSSTSAEPAS 517
           + P+ +P +    S  SAP GS  PS S+  +     A+
Sbjct: 481 SRPAPSPTAVSAISPDSAPAGSGAPSGSSQQAPDVSTAT 477

[Close]
BLAST of CSPI02G05290 vs. TAIR10
Match: AT5G07060.1 (AT5G07060.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 428.7 bits (1101), Expect = 5.1e-120
Identity = 234/432 (54.17%), Postives = 281/432 (65.05%), Query Frame = 1 

Query: 7   RDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKK 66
           RD  ADGWE +DFPI CESC GDNPY+RMT+ADYDKECKIC+RPFT FRWRPGR+AR+KK
Sbjct: 4   RDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGRNARFKK 63

Query: 67  TEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKA 126
           TEICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+INS+ ++P S VNREYFA+EHD K 
Sbjct: 64  TEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFADEHDPKT 123

Query: 127 RAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYRHEMPET 186
           RAG+DYESS+GK +PNDTILKLQR TP Y++NR  +CSFY  G+C RG+EC +RHEMPET
Sbjct: 124 RAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPET 183

Query: 187 GELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVSEQDLRD 246
           GELS QNI+DRYY VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++R+ EQD+ D
Sbjct: 184 GELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHD 243

Query: 247 NFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGRPQAPKA 306
                               F  Y   E     AE+                      K 
Sbjct: 244 -------------------HFYAYGEMESIRVMAED---------------------GKY 303

Query: 307 EIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQQERAFY 366
           +  GS++ +Q ++AH+G+     ISQQ NQ      H Q Q   Y+  PPPP   E + Y
Sbjct: 304 DQSGSNQQQQGSIAHTGL-----ISQQQNQ------HSQMQ--QYYMQPPPP--NEYSHY 356

Query: 367 PSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMHPPPPAQ 426
           PSMD QRMGA  ST ++               GS     ++    + +P       PP  
Sbjct: 364 PSMDTQRMGAAFSTQES--------------DGSSTSENNRAYSSYSYPM------PP-- 356

Query: 427 YQQQFYPPPPPY 439
              Q YP PPPY
Sbjct: 424 --HQPYPTPPPY 356

[Close]
BLAST of CSPI02G05290 vs. TAIR10
Match: AT5G04210.1 (AT5G04210.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-24
Identity = 64/155 (41.29%), Postives = 97/155 (62.58%), Query Frame = 1 

Query: 162 VCSFYIRG-ECTRGSECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLE 221
           +C  +  G +CTRG+ C YRHE+    +   ++      G+ +P  L++L +A     L+
Sbjct: 16  ICPLFDAGRQCTRGTMCLYRHEINRGLDCHGRS------GLENPFVLEVLARACNTGPLK 75

Query: 222 PPEDESIRTLYVGGL-DARVSEQDLRDNFYAHGEIESIRMVLQR---ACAFVTYTTREGA 281
           PPED+SI+TLY+  L ++ V EQD+RD+F  +GEIESI +   R    CAF+TYTTR  A
Sbjct: 76  PPEDQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRLAA 135

Query: 282 EKAAEELSNKLVIRGLRLKLMWGRPQAPKAEIEGS 312
           EKA  ELS+   I+G R+KL+WG  +  + ++ G+
Sbjct: 136 EKAMLELSSWTDIKGQRVKLLWGPTEKWQHKMTGA 164

[Close]
BLAST of CSPI02G05290 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 65.9 bits (159), Expect = 8.6e-11
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 212 KAGEMPS--LEPPEDESIRT-LYVGGLDARVSEQDLRDNFYAHGEIESIRMVLQRACAFV 271
           + G MP+  L  PE + + T ++VGGLD+ V+++DL+  F   GEI S+++ + + C FV
Sbjct: 285 QGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFV 344

Query: 272 TYTTREGAEKAAEELSNKLVIRGLRLKLMWGRPQAPK 306
            +  R  AE+A E+L N  VI    ++L WGR  A K
Sbjct: 345 QFVNRPNAEEALEKL-NGTVIGKQTVRLSWGRNPANK 380

[Close]
BLAST of CSPI02G05290 vs. NCBI nr
Match: gi|778667275|ref|XP_011648901.1| (PREDICTED: zinc finger CCCH domain-containing protein 40 [Cucumis sativus])

HSP 1 Score: 1042.7 bits (2695), Expect = 2.1e-301
Identity = 516/517 (99.81%), Postives = 516/517 (99.81%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
           PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ
Sbjct: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMH 420
           QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYH MH
Sbjct: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHPMH 420

Query: 421 PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP 480
           PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP
Sbjct: 421 PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP 480

Query: 481 PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS 518
           PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS
Sbjct: 481 PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS 517

[Close]
BLAST of CSPI02G05290 vs. NCBI nr
Match: gi|659069955|ref|XP_008452614.1| (PREDICTED: zinc finger CCCH domain-containing protein 40-like [Cucumis melo])

HSP 1 Score: 1000.3 bits (2585), Expect = 1.2e-288
Identity = 502/525 (95.62%), Postives = 507/525 (96.57%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
Sbjct: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
           PQAPKAE+EGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ
Sbjct: 301 PQAPKAEMEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDK--QHQHQHQQGHQFPYHA 420
           QERAFYPSMDPQRMGALVSTHDAG+PPNGPTGSTE RPG +K  QHQHQHQQGHQFPYH 
Sbjct: 361 QERAFYPSMDPQRMGALVSTHDAGVPPNGPTGSTETRPGPEKQHQHQHQHQQGHQFPYHP 420

Query: 421 MHPPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQS------QTQPHPPSGSQQ 480
           MHPPPPAQYQQQFY  PPPYGYVQHYPPYPPYHSGMPPPPQS      Q QPHPPSGSQQ
Sbjct: 421 MHPPPPAQYQQQFY--PPPYGYVQHYPPYPPYHSGMPPPPQSQPQPQPQPQPHPPSGSQQ 480

Query: 481 YQQQHSAPPSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS 518
           YQQQHSAP  SAP SHGGASSGSA +GSTPSA+APSSTSAEPASS
Sbjct: 481 YQQQHSAPSGSAPQSHGGASSGSASVGSTPSAAAPSSTSAEPASS 523

[Close]
BLAST of CSPI02G05290 vs. NCBI nr
Match: gi|1009114911|ref|XP_015873947.1| (PREDICTED: zinc finger CCCH domain-containing protein 49 [Ziziphus jujuba])

HSP 1 Score: 787.3 bits (2032), Expect = 1.6e-224
Identity = 412/526 (78.33%), Postives = 442/526 (84.03%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDTIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESSYGK R NDTILKLQRT PYYKRNRAHVCSFYIRGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKVRSNDTILKLQRTVPYYKRNRAHVCSFYIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDAR+S
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARIS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD+FYAHGEIES+RMVLQRACAFVTYTTREGAEKAAEELSNKLVI+GLRLKLMWGR
Sbjct: 241 EQDLRDHFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
           PQAP+ E + SDEA+Q AVAHSG+LPRAVISQQ NQLHP  THDQ  +M Y+NIPPPP Q
Sbjct: 301 PQAPRPEADSSDEARQQAVAHSGLLPRAVISQQQNQLHPASTHDQGTSMQYYNIPPPP-Q 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMH 420
           QERA+YPSMDPQRMGALV++ D    PNGP+GS E + G +KQ QH       + + AM 
Sbjct: 361 QERAYYPSMDPQRMGALVTSQDGA--PNGPSGSGENKSGLEKQQQH-------YAFQAM- 420

Query: 421 PPPPAQYQQQFYPPPPPYGYVQHYPP----YPPYHSGMPPPPQSQTQPHPPSGSQQYQQQ 480
           PPP  QY QQ+YPP   YGY+   PP    YPPYHS MP          PP  +QQYQ  
Sbjct: 421 PPPHGQYHQQYYPP---YGYMPPPPPPYQQYPPYHSAMPTS-------QPPPMNQQYQHS 480

Query: 481 HSAPPSSAPLSHGGASSG---------SAPLGSTPSASAPSSTSAE 514
            +  P+ AP     ASSG         SAP GSTPSASAP++ S++
Sbjct: 481 ATQGPAPAPSGSTPASSGSAPGSTTSESAPPGSTPSASAPTAASSQ 505

[Close]
BLAST of CSPI02G05290 vs. NCBI nr
Match: gi|1009157634|ref|XP_015896864.1| (PREDICTED: zinc finger CCCH domain-containing protein 49-like [Ziziphus jujuba])

HSP 1 Score: 784.6 bits (2025), Expect = 1.0e-223
Identity = 412/524 (78.63%), Postives = 443/524 (84.54%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND IPKSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDTIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESSYGK R NDTILKLQRT PYYKRNRAHVCSFYIRGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSYGKVRSNDTILKLQRTVPYYKRNRAHVCSFYIRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDAR+S
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARIS 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD+FYAHGEIES+RMVLQRACAFVTYTTREGAEKAAEELSNKLVI+GLRLKLMWGR
Sbjct: 241 EQDLRDHFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ 360
           PQAP+ E + SDEA+Q AVAHSG+LPRAVISQQ +QLHP  THDQ  +M Y+NIPPPP Q
Sbjct: 301 PQAPRPEADSSDEARQQAVAHSGLLPRAVISQQQSQLHPASTHDQGTSMQYYNIPPPP-Q 360

Query: 361 QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHAMH 420
           QERA+YPSMDPQRMGALV++ D    PNGP+GS E + G +KQ QH       + + AM 
Sbjct: 361 QERAYYPSMDPQRMGALVTSQDGA--PNGPSGSGENKSGLEKQQQH-------YAFQAM- 420

Query: 421 PPPPAQYQQQFYPPPPPYGYVQHYPP----YPPYHSGMP---PPPQSQTQPHPPSGSQQY 480
           PPP  QY QQ+YPP   YGY+   PP    YPPYHS MP   PPP +Q   H  +     
Sbjct: 421 PPPHGQYHQQYYPP---YGYMPPPPPPYQQYPPYHSAMPTSQPPPMNQQYQHSAT----- 480

Query: 481 QQQHSAPPSSAPLSHGGA----SSGSAPLGSTPSASAPSSTSAE 514
           Q    AP  S P S G A    +S SAP GSTPSASAP++ S++
Sbjct: 481 QGPAPAPSGSTPTSSGSAPGSSTSESAPPGSTPSASAPTAASSQ 505

[Close]
BLAST of CSPI02G05290 vs. NCBI nr
Match: gi|225434698|ref|XP_002280897.1| (PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera])

HSP 1 Score: 775.4 bits (2001), Expect = 6.3e-221
Identity = 402/488 (82.38%), Postives = 426/488 (87.30%), Query Frame = 1 

Query: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120
           DAR+KKTE+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
Sbjct: 61  DARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE 120

Query: 121 EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR 180
           EHDR+ARAGIDYESS+GK RPNDTILKLQRTTPYYKRNRAHVCSFY+RGECTRG+ECPYR
Sbjct: 121 EHDRRARAGIDYESSFGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS 240
           HEMP TGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESI+TLYVGGLDARV+
Sbjct: 181 HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR 300
           EQDLRD+FYAHGEIES+RMVLQRACAFVTYTTREGAEKAAEELSNKLVI+GLRLKLMWGR
Sbjct: 241 EQDLRDHFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQAPKAEIEGSDEAK-QAAVAHSGMLPRAVISQQHNQ-LHPPGTHDQ-PQAMHYFNIPPP 360
           PQAPK E E S+EA+ QAA+AH GMLPRAVISQQ NQ + PPGT DQ P  MHYFNI PP
Sbjct: 301 PQAPKPEGESSEEARQQAALAHGGMLPRAVISQQQNQVIQPPGTQDQPPPPMHYFNI-PP 360

Query: 361 PPQQERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYH 420
           PPQQER FYPSMDPQRMGALV + +    P+G  G +E + GSDKQ     QQG  + Y 
Sbjct: 361 PPQQERTFYPSMDPQRMGALVPSQEGA--PSGSAGPSENKAGSDKQ-----QQGQHYAYP 420

Query: 421 AMHPPPPAQYQQQFYPPPPPYGYVQHYPPY----PPYHSGMPPPPQSQTQPHPPSGSQQY 480
           AM PPP  Q+ QQFY   PPYGY+   PPY    PPY S MPPPP     P PP  SQQ+
Sbjct: 421 AM-PPPQGQFHQQFY---PPYGYMPPPPPYQQYPPPYPSAMPPPP-----PPPPQASQQF 469

Query: 481 QQQHSAPP 482
             QHSAPP
Sbjct: 481 --QHSAPP 469

The following BLAST results are available for this feature:
BLAST of CSPI02G05290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H40_ORYSJ1.8e-19171.77Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN... [more]
C3H49_ORYSJ1.7e-18972.71Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN... [more]
C3H25_ARATH1.8e-18366.60Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g295... [more]
C3H4_ARATH1.8e-18065.51Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g0736... [more]
C3H53_ARATH9.0e-11954.17Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana GN=At5g070... [more]
BLAST of CSPI02G05290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGN2_CUCSA1.5e-30199.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036090 PE=4 SV=1[more]
A0A067KH26_JATCU8.5e-21777.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12812 PE=4 SV=1[more]
A0A0D2RFW1_GOSRA4.7e-21575.91Uncharacterized protein OS=Gossypium raimondii GN=B456_003G031000 PE=4 SV=1[more]
A0A067KH31_JATCU1.4e-21476.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12817 PE=4 SV=1[more]
A0A068TNM7_COFCA3.0e-21478.88Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014993001 PE=4 SV=1[more]
BLAST of CSPI02G05290 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G29580.11.0e-18466.60 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT1G07360.11.0e-18165.51 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT5G07060.15.1e-12054.17 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT5G04210.15.2e-2441.29 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT1G47490.18.6e-1139.18 RNA-binding protein 47C[more]
BLAST of CSPI02G05290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778667275|ref|XP_011648901.1|2.1e-30199.81PREDICTED: zinc finger CCCH domain-containing protein 40 [Cucumis sativus][more]
gi|659069955|ref|XP_008452614.1|1.2e-28895.62PREDICTED: zinc finger CCCH domain-containing protein 40-like [Cucumis melo][more]
gi|1009114911|ref|XP_015873947.1|1.6e-22478.33PREDICTED: zinc finger CCCH domain-containing protein 49 [Ziziphus jujuba][more]
gi|1009157634|ref|XP_015896864.1|1.0e-22378.63PREDICTED: zinc finger CCCH domain-containing protein 49-like [Ziziphus jujuba][more]
gi|225434698|ref|XP_002280897.1|6.3e-22182.38PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR000571Znf_CCCH
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G05290.1CSPI02G05290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 230..287
score: 2.7
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 229..297
score: 2.8
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 228..301
score: 15
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 157..183
score: 8.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 157..184
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 159..182
score: 6.5
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 217..303
score: 4.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 213..303
score: 1.3
NoneNo IPR availablePANTHERPTHR14089CELL CYCLE CONTROL PROTEINcoord: 1..485
score: 1.7E
NoneNo IPR availablePANTHERPTHR14089:SF6PRE-MRNA-SPLICING FACTOR RBM22coord: 1..485
score: 1.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G05290Cla020025Watermelon (97103) v1cpiwmB149
CSPI02G05290Csa2G036090Cucumber (Chinese Long) v2cpicuB065
CSPI02G05290MELO3C004123Melon (DHL92) v3.5.1cpimeB139
CSPI02G05290ClCG02G014360Watermelon (Charleston Gray)cpiwcgB128
CSPI02G05290Lsi11G006950Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G05290MELO3C004123.2Melon (DHL92) v3.6.1cpimedB132
CSPI02G05290CsaV3_2G007640Cucumber (Chinese Long) v3cpicucB080
CSPI02G05290Cla97C02G040110Watermelon (97103) v2cpiwmbB120
CSPI02G05290Bhi06G001218Wax gourdcpiwgoB138
CSPI02G05290Cucsa.090060Cucumber (Gy14) v1cgycpiB097
CSPI02G05290CsGy2G005420Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G05290Cucurbita pepo (Zucchini)cpecpiB100
CSPI02G05290Cucurbita pepo (Zucchini)cpecpiB371
CSPI02G05290Cucurbita pepo (Zucchini)cpecpiB667
CSPI02G05290Cucurbita pepo (Zucchini)cpecpiB824
CSPI02G05290Melon (DHL92) v3.6.1cpimedB107
CSPI02G05290Cucumber (Gy14) v2cgybcpiB015
CSPI02G05290Silver-seed gourdcarcpiB0144
CSPI02G05290Silver-seed gourdcarcpiB0540
CSPI02G05290Silver-seed gourdcarcpiB0596
CSPI02G05290Silver-seed gourdcarcpiB0952
CSPI02G05290Cucumber (Chinese Long) v3cpicucB072
CSPI02G05290Watermelon (97103) v2cpiwmbB147
CSPI02G05290Wax gourdcpiwgoB216
CSPI02G05290Wild cucumber (PI 183967)cpicpiB006
CSPI02G05290Cucurbita maxima (Rimu)cmacpiB074
CSPI02G05290Cucurbita maxima (Rimu)cmacpiB117
CSPI02G05290Cucurbita maxima (Rimu)cmacpiB177
CSPI02G05290Cucurbita maxima (Rimu)cmacpiB800
CSPI02G05290Cucurbita moschata (Rifu)cmocpiB068
CSPI02G05290Cucurbita moschata (Rifu)cmocpiB109
CSPI02G05290Cucurbita moschata (Rifu)cmocpiB161
CSPI02G05290Cucurbita moschata (Rifu)cmocpiB787
CSPI02G05290Cucumber (Chinese Long) v2cpicuB060
CSPI02G05290Melon (DHL92) v3.5.1cpimeB112
CSPI02G05290Watermelon (Charleston Gray)cpiwcgB153
CSPI02G05290Watermelon (97103) v1cpiwmB173