Cla020018 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020018
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 24810877 .. 24812091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCAAGTTTCGCGCCGGCGATCACCGACCCCCGCCAACACCACCACCACCGCCACCGCCCATGCAGTATGTTCCTCCTCGGCCGTCGGCTGTTTACTGTTTACCTAAGCAAGGATTTCCAGGTTTGCGTTGTTTGTGAACTTTTTGTTTGTTTGTTCGCATTGTGATTTTTTGTGTGGTTTTACTCTGTTTGGATTCCGTGAAAATCGAGCGGCTCGAGAGGTTAAAGATTTCATCGGTTTTTTTATTTGAATAGTGAATAGGTTTTTTTTTCCTTGGAATTGTGAAGCTCTTTCGGAATGCGTTGGAACTCTGACCTGTTTTTGAGGCTTTTTCGATGAGGAATTTGATTGCAATTTTGTTGAACATTGAATGAAAGTTTGGGGAAAGAAGTTTCACCTTCCTTTTCTGTGGGGGGTTGACGCGAAGAATGAGACTCGTAGATTTTACCGATCAATTTTGAAATTTACTTTTCCTTTTTCTAGCTCGGTTAGGATTTCTTACTCTTTCCAGTTATGGTAGCGGTTCCTCTTTTCAAATCCCCTAACAGATCATCCCGAAAATCTTTCGATTCTCTCTTATTGAACGGTTGCGATCGCACTTTAGAGAACGCATTTGGGAGAGGAATCTTAGATTTCTCACTTTTTTCTGATTTTACATGATTTTCAACTTCTTGATGAATTCAACAGATGCTTATCTCAGACGAACAACGAACGTCATAACATTGAGAAAGCCGTTCGATTCAAACGAGGAAATGCATTGGGAAATGGAGCTAATGCGATTAAGGGAAGAGAAATTGCTAGGAGAAATTGAACGGCAGCGATTTCTGAAAGAGGAAGCGAGGAGAGAACTGATGTTGTTCGAACGAGAGATGGCTATTCGAGGAGTTGCGCAGTCCGCCGGATATCCTCTCCGACAGCCGCAACGATGGGGAGCGCCGTTCAGCGCTGCGGCAGCGTCTTGTCCGTCTCCATTGCCGTCGCCGTCGCCGTCGCCGGCGGTAGTGGTGCAATCGTTCCATGAATGGCAGAAGATGGAGCAAGTAAACAGTTCCGATCGCCTTGGGTTTGGTGCGGTGGCGTTGCCGCCGCGGATTCAGCCATTAATGGTGGAAGACAAAAAGGAGCATCAAGTACTAGAGGCTGATAAAAGAGAACTCATTGTACTGGTTTGCCTCTATATCTCTATCTTCTTTACTTTTCTTCGATGA

mRNA sequence

ATGGAGTTCAAGTTTCGCGCCGGCGATCACCGACCCCCGCCAACACCACCACCACCGCCACCGCCCATGCAGTATGTTCCTCCTCGGCCGTCGGCTGTTTACTGTTTACCTAAGCAAGGATTTCCAGATGCTTATCTCAGACGAACAACGAACGTCATAACATTGAGAAAGCCGTTCGATTCAAACGAGGAAATGCATTGGGAAATGGAGCTAATGCGATTAAGGGAAGAGAAATTGCTAGGAGAAATTGAACGGCAGCGATTTCTGAAAGAGGAAGCGAGGAGAGAACTGATGTTGTTCGAACGAGAGATGGCTATTCGAGGAGTTGCGCAGTCCGCCGGATATCCTCTCCGACAGCCGCAACGATGGGGAGCGCCGTTCAGCGCTGCGGCAGCGTCTTGTCCGTCTCCATTGCCGTCGCCGTCGCCGTCGCCGGCGGTAGTGGTGCAATCGTTCCATGAATGGCAGAAGATGGAGCAAGTAAACAGTTCCGATCGCCTTGGGTTTGGTGCGGTGGCGTTGCCGCCGCGGATTCAGCCATTAATGGTGGAAGACAAAAAGGAGCATCAAGTACTAGAGGCTGATAAAAGAGAACTCATTGTACTGGTTTGCCTCTATATCTCTATCTTCTTTACTTTTCTTCGATGA

Coding sequence (CDS)

ATGGAGTTCAAGTTTCGCGCCGGCGATCACCGACCCCCGCCAACACCACCACCACCGCCACCGCCCATGCAGTATGTTCCTCCTCGGCCGTCGGCTGTTTACTGTTTACCTAAGCAAGGATTTCCAGATGCTTATCTCAGACGAACAACGAACGTCATAACATTGAGAAAGCCGTTCGATTCAAACGAGGAAATGCATTGGGAAATGGAGCTAATGCGATTAAGGGAAGAGAAATTGCTAGGAGAAATTGAACGGCAGCGATTTCTGAAAGAGGAAGCGAGGAGAGAACTGATGTTGTTCGAACGAGAGATGGCTATTCGAGGAGTTGCGCAGTCCGCCGGATATCCTCTCCGACAGCCGCAACGATGGGGAGCGCCGTTCAGCGCTGCGGCAGCGTCTTGTCCGTCTCCATTGCCGTCGCCGTCGCCGTCGCCGGCGGTAGTGGTGCAATCGTTCCATGAATGGCAGAAGATGGAGCAAGTAAACAGTTCCGATCGCCTTGGGTTTGGTGCGGTGGCGTTGCCGCCGCGGATTCAGCCATTAATGGTGGAAGACAAAAAGGAGCATCAAGTACTAGAGGCTGATAAAAGAGAACTCATTGTACTGGTTTGCCTCTATATCTCTATCTTCTTTACTTTTCTTCGATGA

Protein sequence

MEFKFRAGDHRPPPTPPPPPPPMQYVPPRPSAVYCLPKQGFPDAYLRRTTNVITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMAIRGVAQSAGYPLRQPQRWGAPFSAAAASCPSPLPSPSPSPAVVVQSFHEWQKMEQVNSSDRLGFGAVALPPRIQPLMVEDKKEHQVLEADKRELIVLVCLYISIFFTFLR

Homology

[Close]

BLAST of Cla020018 vs. TrEMBL
Match: A0A0A0LJ38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035540 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.7e-68
Identity = 143/221 (64.71%), Postives = 164/221 (74.21%), Query Frame = 1


Query: 1   MEFKFRAGDHRPPPTPPPPP---------PPMQYVPPRPSAVYCLPKQGFPDAYL----- 60
           MEFKFR  D R PP PPPPP         PPM ++PP   AVYCL +QGFPD ++     
Sbjct: 1   MEFKFRVDDLRKPPPPPPPPQMHFLPPMPPPMHFLPPASPAVYCLSEQGFPDFFMDSADA 60

Query: 61  -RRTTNVITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMA 120
            R+TTN+ TLR+PF+ NEEMH EME MRLREEKL+GEIER+RFLKEEARREL LFERE+A
Sbjct: 61  FRQTTNIGTLRQPFNLNEEMHLEMEFMRLREEKLIGEIERERFLKEEARRELRLFEREIA 120

Query: 121 IRGVAQSA-GYPLRQPQRWGAPFSAAAASCPS---PLPSPSPSPAVVVQSFHEWQKMEQV 180
           IRG+ QSA GYP +QPQRW AP        PS    +P PSPS A+VVQS+HEWQ MEQV
Sbjct: 121 IRGLTQSAVGYPFQQPQRWVAPPFCPVTGPPSSAVAVPCPSPSQALVVQSYHEWQNMEQV 180

Query: 181 NSSDRLGFGAVALPPRIQPLMVEDKKEHQVLEADKRELIVL 203
            +SDRLGFGAVAL PRIQPLMVEDKKE     A++R+LIVL
Sbjct: 181 KTSDRLGFGAVALRPRIQPLMVEDKKE----AANERKLIVL 217

[Close]

BLAST of Cla020018 vs. NCBI nr
Match: gi|659069985|ref|XP_008452753.1| (PREDICTED: hepatoma-derived growth factor-related protein 2-like isoform X3 [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 6.5e-71
Identity = 143/215 (66.51%), Postives = 167/215 (77.67%), Query Frame = 1


Query: 1   MEFKFRAGDHRPPPTPPPPP---------PPMQYVPPRPSAVYCLPKQGFPDAYLRRTTN 60
           MEF FRAGDHRPPP PPPPP         PPMQ++PP P   YCL +QGF +++ R+TTN
Sbjct: 1   MEFNFRAGDHRPPPPPPPPPAMQLLPPRPPPMQFLPPGPPPAYCLSEQGFSESF-RQTTN 60

Query: 61  VITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMAIRGVAQ 120
           ++TLR+PF  NEE HWEMELMRLREEKL+GEIER+RFLKEEARREL LFERE+AIRG+  
Sbjct: 61  IVTLRQPFVPNEERHWEMELMRLREEKLMGEIERERFLKEEARRELRLFEREIAIRGLTP 120

Query: 121 SA-GYPLRQPQRW-GAPFSAAAASCPSPLPSPSPSPAVVVQSFHEWQKMEQVNSSDRLGF 180
           SA GYP +QPQ+W G P SA AA CPSPL      PAV V ++HEW +MEQV +S RLGF
Sbjct: 121 SAVGYPFQQPQQWVGPPSSAVAAPCPSPL------PAVPVHAYHEWHRMEQVKTSGRLGF 180

Query: 181 GAVALPPRIQPLMVEDKKEHQVLE--ADKRELIVL 203
           GAV+L PRIQPLMVEDKKE +V +  A +RELIVL
Sbjct: 181 GAVSLRPRIQPLMVEDKKEPKVTKEAASERELIVL 208

[Close]

BLAST of Cla020018 vs. NCBI nr
Match: gi|659069981|ref|XP_008452738.1| (PREDICTED: hepatoma-derived growth factor-related protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 144/221 (65.16%), Postives = 167/221 (75.57%), Query Frame = 1


Query: 1   MEFKFRAGDHRPPPTPPPPP---------PPMQYVPPRPSAVYCLPKQGFPDAYL----- 60
           MEF FRAGDHRPPP PPPPP         PPMQ++PP P   YCL +QGF D ++     
Sbjct: 1   MEFNFRAGDHRPPPPPPPPPAMQLLPPRPPPMQFLPPGPPPAYCLSEQGFSDFFMDSTES 60

Query: 61  -RRTTNVITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMA 120
            R+TTN++TLR+PF  NEE HWEMELMRLREEKL+GEIER+RFLKEEARREL LFERE+A
Sbjct: 61  FRQTTNIVTLRQPFVPNEERHWEMELMRLREEKLMGEIERERFLKEEARRELRLFEREIA 120

Query: 121 IRGVAQSA-GYPLRQPQRW-GAPFSAAAASCPSPLPSPSPSPAVVVQSFHEWQKMEQVNS 180
           IRG+  SA GYP +QPQ+W G P SA AA CPSPL      PAV V ++HEW +MEQV +
Sbjct: 121 IRGLTPSAVGYPFQQPQQWVGPPSSAVAAPCPSPL------PAVPVHAYHEWHRMEQVKT 180

Query: 181 SDRLGFGAVALPPRIQPLMVEDKKEHQVLE--ADKRELIVL 203
           S RLGFGAV+L PRIQPLMVEDKKE +V +  A +RELIVL
Sbjct: 181 SGRLGFGAVSLRPRIQPLMVEDKKEPKVTKEAASERELIVL 215

[Close]

BLAST of Cla020018 vs. NCBI nr
Match: gi|659069983|ref|XP_008452745.1| (PREDICTED: hepatoma-derived growth factor-related protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 9.3e-70
Identity = 142/219 (64.84%), Postives = 165/219 (75.34%), Query Frame = 1


Query: 1   MEFKFRAGDHRPPPTPPPPP---------PPMQYVPPRPSAVYCLPKQGFPDAYL----- 60
           MEF FRAGDHRPPP PPPPP         PPMQ++PP P   YCL +QGF D ++     
Sbjct: 1   MEFNFRAGDHRPPPPPPPPPAMQLLPPRPPPMQFLPPGPPPAYCLSEQGFSDFFMDSTES 60

Query: 61  -RRTTNVITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMA 120
            R+TTN++TLR+PF  NEE HWEMELMRLREEKL+GEIER+RFLKEEARREL LFERE+A
Sbjct: 61  FRQTTNIVTLRQPFVPNEERHWEMELMRLREEKLMGEIERERFLKEEARRELRLFEREIA 120

Query: 121 IRGVAQSA-GYPLRQPQRW-GAPFSAAAASCPSPLPSPSPSPAVVVQSFHEWQKMEQVNS 180
           IRG+  SA GYP +QPQ+W G P SA AA CPSPL      PAV V ++HEW +MEQV +
Sbjct: 121 IRGLTPSAVGYPFQQPQQWVGPPSSAVAAPCPSPL------PAVPVHAYHEWHRMEQVKT 180

Query: 181 SDRLGFGAVALPPRIQPLMVEDKKEHQVLE--ADKRELI 201
           S RLGFGAV+L PRIQPLMVEDKKE +V +  A +RELI
Sbjct: 181 SGRLGFGAVSLRPRIQPLMVEDKKEPKVTKEAASERELI 213

[Close]

BLAST of Cla020018 vs. NCBI nr
Match: gi|778667249|ref|XP_011648895.1| (PREDICTED: uncharacterized protein LOC101215299 isoform X1 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 3.9e-68
Identity = 143/221 (64.71%), Postives = 164/221 (74.21%), Query Frame = 1


Query: 1   MEFKFRAGDHRPPPTPPPPP---------PPMQYVPPRPSAVYCLPKQGFPDAYL----- 60
           MEFKFR  D R PP PPPPP         PPM ++PP   AVYCL +QGFPD ++     
Sbjct: 1   MEFKFRVDDLRKPPPPPPPPQMHFLPPMPPPMHFLPPASPAVYCLSEQGFPDFFMDSADA 60

Query: 61  -RRTTNVITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMA 120
            R+TTN+ TLR+PF+ NEEMH EME MRLREEKL+GEIER+RFLKEEARREL LFERE+A
Sbjct: 61  FRQTTNIGTLRQPFNLNEEMHLEMEFMRLREEKLIGEIERERFLKEEARRELRLFEREIA 120

Query: 121 IRGVAQSA-GYPLRQPQRWGAPFSAAAASCPS---PLPSPSPSPAVVVQSFHEWQKMEQV 180
           IRG+ QSA GYP +QPQRW AP        PS    +P PSPS A+VVQS+HEWQ MEQV
Sbjct: 121 IRGLTQSAVGYPFQQPQRWVAPPFCPVTGPPSSAVAVPCPSPSQALVVQSYHEWQNMEQV 180

Query: 181 NSSDRLGFGAVALPPRIQPLMVEDKKEHQVLEADKRELIVL 203
            +SDRLGFGAVAL PRIQPLMVEDKKE     A++R+LIVL
Sbjct: 181 KTSDRLGFGAVALRPRIQPLMVEDKKE----AANERKLIVL 217

[Close]

BLAST of Cla020018 vs. NCBI nr
Match: gi|449454103|ref|XP_004144795.1| (PREDICTED: uncharacterized protein LOC101215299 isoform X2 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 3.3e-67
Identity = 141/219 (64.38%), Postives = 162/219 (73.97%), Query Frame = 1


Query: 1   MEFKFRAGDHRPPPTPPPPP---------PPMQYVPPRPSAVYCLPKQGFPDAYL----- 60
           MEFKFR  D R PP PPPPP         PPM ++PP   AVYCL +QGFPD ++     
Sbjct: 1   MEFKFRVDDLRKPPPPPPPPQMHFLPPMPPPMHFLPPASPAVYCLSEQGFPDFFMDSADA 60

Query: 61  -RRTTNVITLRKPFDSNEEMHWEMELMRLREEKLLGEIERQRFLKEEARRELMLFEREMA 120
            R+TTN+ TLR+PF+ NEEMH EME MRLREEKL+GEIER+RFLKEEARREL LFERE+A
Sbjct: 61  FRQTTNIGTLRQPFNLNEEMHLEMEFMRLREEKLIGEIERERFLKEEARRELRLFEREIA 120

Query: 121 IRGVAQSA-GYPLRQPQRWGAPFSAAAASCPS---PLPSPSPSPAVVVQSFHEWQKMEQV 180
           IRG+ QSA GYP +QPQRW AP        PS    +P PSPS A+VVQS+HEWQ MEQV
Sbjct: 121 IRGLTQSAVGYPFQQPQRWVAPPFCPVTGPPSSAVAVPCPSPSQALVVQSYHEWQNMEQV 180

Query: 181 NSSDRLGFGAVALPPRIQPLMVEDKKEHQVLEADKRELI 201
            +SDRLGFGAVAL PRIQPLMVEDKKE     A++R+LI
Sbjct: 181 KTSDRLGFGAVALRPRIQPLMVEDKKE----AANERKLI 215

The following BLAST results are available for this feature:

BLAST of Cla020018 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ38_CUCSA	2.7e-68	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035540 PE=4 SV=1	[more]

BLAST of Cla020018 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069985\|ref\|XP_008452753.1\|	6.5e-71	66.51	PREDICTED: hepatoma-derived growth factor-related protein 2-like isoform X3 [Cuc...	[more]
gi\|659069981\|ref\|XP_008452738.1\|	1.1e-70	65.16	PREDICTED: hepatoma-derived growth factor-related protein 2-like isoform X1 [Cuc...	[more]
gi\|659069983\|ref\|XP_008452745.1\|	9.3e-70	64.84	PREDICTED: hepatoma-derived growth factor-related protein 2-like isoform X2 [Cuc...	[more]
gi\|778667249\|ref\|XP_011648895.1\|	3.9e-68	64.71	PREDICTED: uncharacterized protein LOC101215299 isoform X1 [Cucumis sativus]	[more]
gi\|449454103\|ref\|XP_004144795.1\|	3.3e-67	64.38	PREDICTED: uncharacterized protein LOC101215299 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020018	Cla020018.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 83..103 scor
None	No IPR available	unknown	SSF101447	Formin homology 2 domain (FH2 domain)	coord: 12..22 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020018	Cla97C02G040180	Watermelon (97103) v2	wmwmbB316
Cla020018	Csa2G035540	Cucumber (Chinese Long) v2	cuwmB147
Cla020018	MELO3C004128	Melon (DHL92) v3.5.1	mewmB418
Cla020018	ClCG02G014420	Watermelon (Charleston Gray)	wcgwmB197
Cla020018	CSPI02G05230	Wild cucumber (PI 183967)	cpiwmB149
Cla020018	Cucsa.090130	Cucumber (Gy14) v1	cgywmB105
Cla020018	CmaCh12G008540	Cucurbita maxima (Rimu)	cmawmB171
Cla020018	CmaCh05G010320	Cucurbita maxima (Rimu)	cmawmB764
Cla020018	CmoCh12G008580	Cucurbita moschata (Rifu)	cmowmB157
Cla020018	CmoCh05G010440	Cucurbita moschata (Rifu)	cmowmB757
Cla020018	Lsi11G006890	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla020018	Cp4.1LG11g08330	Cucurbita pepo (Zucchini)	cpewmB113
Cla020018	Cp4.1LG07g07020	Cucurbita pepo (Zucchini)	cpewmB807
Cla020018	CsGy2G005370	Cucumber (Gy14) v2	cgybwmB140
Cla020018	MELO3C004128.2	Melon (DHL92) v3.6.1	medwmB407
Cla020018	Carg11968	Silver-seed gourd	carwmB0563
Cla020018	Carg16432	Silver-seed gourd	carwmB0913
Cla020018	CsaV3_2G007580	Cucumber (Chinese Long) v3	cucwmB159
Cla020018	Bhi06G001225	Wax gourd	wgowmB134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None