Cla019956 (gene) Watermelon (97103) v1

Overview
NameCla019956
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionZinc finger matrin type 2 (AHRD V1 **** Q6DEN8_XENTR); contains Interpro domain(s) IPR003604 Zinc finger, U1-type
LocationChr2 : 25416605 .. 25418991 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATACCAGCAATACTGTAAGTTCTAATCTCCTTTTTCGTTTTAAACCCTAACTTACTGATATTCTATCCCAACTAGAATCCTGCGAATGGTTCTGGTTCTAGTTCGAGAAAAATCATTAAGAATGATCAATAATCTTTACTCTTTCCTTTTGGGATTTTGATGAGGTGTCTTTGCAACTAATTTCGGTCGATTTCTTGTATGTAGGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGTTGGGGCTTTTGGAATATCTCCTTCTCATCGTCATCTTAATGCTTATTTCTATGAGTGTTCCTCGAATGTTTCAATTTTTGCTGATGTGATGTCTTTAATCTGTATTTCAGGAGGTTGAGAGGGTTAAGTCCAAATGTAAGTGTTTCTTTTTGAGTATTTTGCTTGTGTTCACGTGTAATTATAGAAGCTAGATTATGCAGTCTTGGTTTGATGTTTCAGAAGGACTTAATTTTTCATCTTCCTTCAGTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTCAGTCAGCCTATTTTTCTCTCTGGTCCTTGAAACATTATCTTGAATACATGTGTATTTAGGTCTTTTTGATGGGAGAAACTGTATTTGCACTTCTCTTTTGTATTTCTGTGGTGAAGTTAAGGCTGTTTTGAGTTGCTAATTGTTCGTTGTTCATTAACTTTCAAAATCTTCAGTATATTAAGTTAAGATTTTGGCCTGTGGTTGGATGTTGCTGTAGATTCAAATTCTATGACATATAAAACTCATTTCTTGTTACCTGTACTGCCCGTAGTTAACTGGCCAGCATGTTAGATCTCCTCTGTAAGACATTTTCATGATGATGGGGAATGACTATTTTGTGTATTCACTTTATAGGTTGACTTTCTCTTGACTGATAACGATGGAAAAACATATAAAAGGTTATCTTCATTAGGCCTGTGTTTGATGAACTCAGATATGTACTGGGGAATCGCACTCAATTAAAGGCAATCAACTATTACCTAGTTATGAAACAAGCTTTTTGTATGTCTTGCACATGTCAATATAATTTTCTCTATATTAGATTCCAGTTGATGTGATCAATGTCTTATGATTTGACCTATTTCATTCTTGTATTGATCGTTAATTCATTCTTCTGCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGTATCACTCTTAACCATCTTTTCTCTTAGTGCTGGTGTTAAATCTTGAATTACATTTGAGCAATTTCAATTTTTAACGAGGGTATAACTTATTGACTTGAAAAGAAATACTGGAGGAAAAATGAAGGTGGCTTTGCATGTATGGTTTTGGTTAATGTGCTCTTCAATTGAGTATCCCATGGGTGCTGTGTTATGGAATATAAATTGCATTCAATATCTTACTGCTTTTTTTCTCCTTTATATTTTATTGATGAGTTCTTTTTCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTAGTCAAGGATTCCGCAAATTACTTGGATCATATCAATGGAAAGAAACGTATGCCATCCCTTCTGCCACAACTTTAGCCAATTATGTGGGTGAAATATTCAGTTTTTTTTCTTTTTTTAAATTGCTTTACCTTGTTTCCTGTTGACATGTTGTAGATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTACCATGCTAAATACTCAGCAAGATGAAATTATTCATTATTGTAGATATTTGAGAAATCTCAGTATCCAAGGGGCTAAGTAGCTTTCTGTGAAATAAAATAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGGTAAAGCTAATTTCCTCCCCATGTTAATTTCATTGATGGATGGCATTATTATTACCTTACCATGATTTTAACTGCAAAAATACACAAGCATCCAATATTATCACTATTCTTTGTTTCACTTTTTAGAATTATGTTTTATTTACTGACGCTATCTTCTATTTTACTTTAGATCTTGAAGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGAAAGCGTGAGCGACGAGAAAGGAAGAAAGAAAAGAAGGTAGTACTATGATCTCACGATTTTGGTTTAAAAAAATGATTTCTATCATGGAAAGAGAGGATCACATTTTACGCTTTTGTTATTCTCCTCGAGTGTAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCAAAGAAGTGA

mRNA sequence

ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTAGTCAAGGATTCCGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGAAAGCGTGAGCGACGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCAAAGAAGTGA

Coding sequence (CDS)

ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTAGTCAAGGATTCCGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGAAAGCGTGAGCGACGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCAAAGAAGTGA

Protein sequence

MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK
Homology
[Close]
BLAST of Cla019956 vs. Swiss-Prot
Match: ZMAT2_HUMAN (Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-49
Identity = 100/188 (53.19%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 15  FRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTP 74
           FRRK+D++EY + A +R  +E E+   K    PV+R+ L+HRDY+VDLES+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGF 194
           K+K      + D EER+ + ++EEE+ K  ++E++KEKK+    +   E D ++AA+MGF
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGF 191

Query: 195 GGFRSSKK 203
            GF S+KK
Sbjct: 192 SGFGSTKK 197

[Close]
BLAST of Cla019956 vs. Swiss-Prot
Match: ZMAT2_MOUSE (Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-49
Identity = 100/188 (53.19%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 15  FRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTP 74
           FRRK+D++EY + A +R  +E E+   K    PV+R+ L+HRDY+VDLES+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGF 194
           K+K      + D EER+ + ++EEE+ K  ++E++KEKK+    +   E D ++AA+MGF
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGF 191

Query: 195 GGFRSSKK 203
            GF S+KK
Sbjct: 192 SGFGSTKK 197

[Close]
BLAST of Cla019956 vs. Swiss-Prot
Match: SNU23_CAEEL (Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans GN=snu-23 PE=3 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-38
Identity = 83/215 (38.60%), Postives = 139/215 (64.65%), Query Frame = 1 

Query: 4   TSNTAAGVDNTFRRKFDREEYLERARER-----EKQEVERVKSKLKGPPVQRKPLKHRDY 63
           + + A+G ++  RR +D +EY   A++R     E +++   K K   P V+R+ L+ R+Y
Sbjct: 7   SGSQASGTNH--RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREY 66

Query: 64  EVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 123
           +VDL+S++GK+ V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ 
Sbjct: 67  KVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKT 126

Query: 124 ERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQR--------KRERRERKK 183
           +++++  V+ERF+++K +K       Q   E++L+  QEEE R        K + R+RK+
Sbjct: 127 KKSTVADVRERFKLMKDKKEREKKEAQ--VEQLLEDVQEEEARMADFKKDKKTDNRKRKR 186

Query: 184 EKKKEKAAEEEPE---VDPDVAAMMGFGGFRSSKK 203
           + +K++  +++ +   +DP++ AMMGF GF +SK+
Sbjct: 187 DTRKDEEEDDDEDDSGLDPEIRAMMGFSGFSTSKR 217

[Close]
BLAST of Cla019956 vs. Swiss-Prot
Match: SNU23_YEAST (23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU23 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 54/201 (26.87%), Postives = 94/201 (46.77%), Query Frame = 1 

Query: 11  VDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRL---G 70
           + N  RR +DREEY E+AR     +   +K+ L    +Q    K+ +Y+  ++  L    
Sbjct: 1   MSNFGRRTWDREEYAEQARSG--YDDRSLKATLTPIELQALKSKYTNYDHLIKGSLKDLN 60

Query: 71  KTQVVTPVAPLS-----QQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 130
           K ++      LS     ++ G+YC +C    KD+  Y+DH+N K H  A+      +   
Sbjct: 61  KRKLTANTESLSSFKRGKKFGFYCDICNLTFKDTLQYIDHLNHKVH--AIKFENLFDEPL 120

Query: 131 LEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRER-RERKKEKKKEKAAEEE 190
           +  +++  +V ++          +L +  ++ +  E Q KR+R  +   EK K+ A +  
Sbjct: 121 IIDIRDNDDVPQEE---FELCYHNLIKDFVEVRSMETQSKRKRLLDTDVEKAKKVATKPS 180

Query: 191 PEVDPDVAAMMGFGGFRSSKK 203
            E +  V+ MMGF  F +SKK
Sbjct: 181 IESESKVSQMMGFSNFATSKK 194

[Close]
BLAST of Cla019956 vs. TrEMBL
Match: A0A0A0LM02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033890 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 8.7e-109
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 1 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQEV+RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]
BLAST of Cla019956 vs. TrEMBL
Match: D7UA14_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01370 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.8e-99
Identity = 183/204 (89.71%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVE--RVKSKLKGPPVQRKPLKHRDY 60
           MA +SN A GVDNTFRRKFD+EEYLERAR+RE++E E  R KSK KGPPVQRKPLKHRDY
Sbjct: 1   MAQSSNNAVGVDNTFRRKFDKEEYLERARKREQEEEEGGRHKSKSKGPPVQRKPLKHRDY 60

Query: 61  EVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 120
           EVDLESRLGKTQVVTP+APLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV
Sbjct: 61  EVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 120

Query: 121 ERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAA 180
           ERASL+QVQERFEVLKKR+TPGSFTEQDL+ERILKQQQEEE+RKR+RRERKKEKKKEKA 
Sbjct: 121 ERASLQQVQERFEVLKKRRTPGSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAV 180

Query: 181 EEEPEVDPDVAAMMGFGGFRSSKK 203
           EEEPE+DPDVAAMMGFGGFRSSKK
Sbjct: 181 EEEPELDPDVAAMMGFGGFRSSKK 204

[Close]
BLAST of Cla019956 vs. TrEMBL
Match: A0A0B0MXS7_GOSAR (Zinc finger matrin-type 2 OS=Gossypium arboreum GN=F383_30785 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.0e-97
Identity = 181/199 (90.95%), Postives = 190/199 (95.48%), Query Frame = 1 

Query: 5   SNTAAGVDNTFRRKFDREEYLERAREREKQEVE-RVKSKLKGPPVQRKPLKHRDYEVDLE 64
           +N   GVDNTFR+KFDREEYLERAREREKQEVE R KSK KGPPVQRKPLKHRDYEVDLE
Sbjct: 4   NNNTLGVDNTFRKKFDREEYLERAREREKQEVEGRNKSKAKGPPVQRKPLKHRDYEVDLE 63

Query: 65  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 124
           SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL
Sbjct: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123

Query: 125 EQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPE 184
           +QVQERFE LKKRK PGSFTEQDL+ERI+KQQ+EEE+RKR+RRERKKEKKKEKAAEEEPE
Sbjct: 124 KQVQERFEQLKKRKPPGSFTEQDLDERIIKQQEEEEERKRQRRERKKEKKKEKAAEEEPE 183

Query: 185 VDPDVAAMMGFGGFRSSKK 203
           +DPDVAAMMGFGGF SSKK
Sbjct: 184 IDPDVAAMMGFGGFGSSKK 202

[Close]
BLAST of Cla019956 vs. TrEMBL
Match: A0A061F406_THECC (C2H2 and C2HC zinc fingers superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_026747 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 2.6e-97
Identity = 179/200 (89.50%), Postives = 192/200 (96.00%), Query Frame = 1 

Query: 4   TSNTAAGVDNTFRRKFDREEYLERAREREKQEVE-RVKSKLKGPPVQRKPLKHRDYEVDL 63
           +SN A GVDNTFR+KFDREEYL+RAREREKQE E R KSK KGPPVQRKPLKHRDYEVDL
Sbjct: 3   SSNNALGVDNTFRKKFDREEYLQRAREREKQESEGRSKSKAKGPPVQRKPLKHRDYEVDL 62

Query: 64  ESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 123
           ESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERA+
Sbjct: 63  ESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAT 122

Query: 124 LEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEP 183
           L+QVQERF+ LKKRK PGSF+EQDL+ERI+KQQ+EEE+RKR+RRERKKEKKKEKAAEEEP
Sbjct: 123 LQQVQERFDQLKKRKAPGSFSEQDLDERIIKQQEEEEERKRQRRERKKEKKKEKAAEEEP 182

Query: 184 EVDPDVAAMMGFGGFRSSKK 203
           E+DPDVAAMMGFGGFRSSKK
Sbjct: 183 EIDPDVAAMMGFGGFRSSKK 202

[Close]
BLAST of Cla019956 vs. TrEMBL
Match: A0A0D2S4W9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G237200 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 5.9e-97
Identity = 180/199 (90.45%), Postives = 189/199 (94.97%), Query Frame = 1 

Query: 5   SNTAAGVDNTFRRKFDREEYLERAREREKQEVE-RVKSKLKGPPVQRKPLKHRDYEVDLE 64
           +N   GVDNTFR+KFDREEYLERAREREKQE E R KSK KGPPVQRKPLKHRDYEVDLE
Sbjct: 4   NNNTLGVDNTFRKKFDREEYLERAREREKQEAEGRNKSKAKGPPVQRKPLKHRDYEVDLE 63

Query: 65  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 124
           SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL
Sbjct: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123

Query: 125 EQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPE 184
           +QVQERFE LKKRK PGSFTEQDL+ERI+KQQ+EEE+RKR+RRERKKEKKKEKAAEEEPE
Sbjct: 124 KQVQERFEQLKKRKPPGSFTEQDLDERIIKQQEEEEERKRQRRERKKEKKKEKAAEEEPE 183

Query: 185 VDPDVAAMMGFGGFRSSKK 203
           +DPDVAAMMGFGGF SSKK
Sbjct: 184 IDPDVAAMMGFGGFGSSKK 202

[Close]
BLAST of Cla019956 vs. NCBI nr
Match: gi|659070162|ref|XP_008453709.1| (PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo])

HSP 1 Score: 403.3 bits (1035), Expect = 2.5e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]
BLAST of Cla019956 vs. NCBI nr
Match: gi|778667012|ref|XP_011648855.1| (PREDICTED: zinc finger matrin-type protein 2 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 1.3e-108
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 1 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQEV+RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]
BLAST of Cla019956 vs. NCBI nr
Match: gi|359487537|ref|XP_002282596.2| (PREDICTED: zinc finger matrin-type protein 2 isoform X2 [Vitis vinifera])

HSP 1 Score: 368.6 bits (945), Expect = 6.9e-99
Identity = 183/204 (89.71%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVE--RVKSKLKGPPVQRKPLKHRDY 60
           MA +SN A GVDNTFRRKFD+EEYLERAR+RE++E E  R KSK KGPPVQRKPLKHRDY
Sbjct: 1   MAQSSNNAVGVDNTFRRKFDKEEYLERARKREQEEEEGGRHKSKSKGPPVQRKPLKHRDY 60

Query: 61  EVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 120
           EVDLESRLGKTQVVTP+APLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV
Sbjct: 61  EVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 120

Query: 121 ERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAA 180
           ERASL+QVQERFEVLKKR+TPGSFTEQDL+ERILKQQQEEE+RKR+RRERKKEKKKEKA 
Sbjct: 121 ERASLQQVQERFEVLKKRRTPGSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAV 180

Query: 181 EEEPEVDPDVAAMMGFGGFRSSKK 203
           EEEPE+DPDVAAMMGFGGFRSSKK
Sbjct: 181 EEEPELDPDVAAMMGFGGFRSSKK 204

[Close]
BLAST of Cla019956 vs. NCBI nr
Match: gi|1009116675|ref|XP_015874903.1| (PREDICTED: zinc finger matrin-type protein 2 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 364.8 bits (935), Expect = 9.9e-98
Identity = 182/203 (89.66%), Postives = 190/203 (93.60%), Query Frame = 1 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVE-RVKSKLKGPPVQRKPLKHRDYE 60
           MAH SN A GVDNTFRRKFDREEYLERAREREKQE E R KSK KGP VQRKPLKHRDYE
Sbjct: 1   MAHNSNNAGGVDNTFRRKFDREEYLERAREREKQEAEGRTKSKSKGPSVQRKPLKHRDYE 60

Query: 61  VDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVE 120
           VDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVE
Sbjct: 61  VDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVE 120

Query: 121 RASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAE 180
           RASL QV++RFE+LKKRK PGSFTEQDL+ERILKQQQE+E+RKR+RRERKKEKKKEK  E
Sbjct: 121 RASLNQVKDRFELLKKRKVPGSFTEQDLDERILKQQQEDEERKRQRRERKKEKKKEKVEE 180

Query: 181 EEPEVDPDVAAMMGFGGFRSSKK 203
           EE E+DPDVAAMMGFGGFRSSKK
Sbjct: 181 EETEMDPDVAAMMGFGGFRSSKK 203

[Close]
BLAST of Cla019956 vs. NCBI nr
Match: gi|728824066|gb|KHG05590.1| (Zinc finger matrin-type 2 [Gossypium arboreum])

HSP 1 Score: 363.2 bits (931), Expect = 2.9e-97
Identity = 181/199 (90.95%), Postives = 190/199 (95.48%), Query Frame = 1 

Query: 5   SNTAAGVDNTFRRKFDREEYLERAREREKQEVE-RVKSKLKGPPVQRKPLKHRDYEVDLE 64
           +N   GVDNTFR+KFDREEYLERAREREKQEVE R KSK KGPPVQRKPLKHRDYEVDLE
Sbjct: 4   NNNTLGVDNTFRKKFDREEYLERAREREKQEVEGRNKSKAKGPPVQRKPLKHRDYEVDLE 63

Query: 65  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 124
           SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL
Sbjct: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123

Query: 125 EQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPE 184
           +QVQERFE LKKRK PGSFTEQDL+ERI+KQQ+EEE+RKR+RRERKKEKKKEKAAEEEPE
Sbjct: 124 KQVQERFEQLKKRKPPGSFTEQDLDERIIKQQEEEEERKRQRRERKKEKKKEKAAEEEPE 183

Query: 185 VDPDVAAMMGFGGFRSSKK 203
           +DPDVAAMMGFGGF SSKK
Sbjct: 184 IDPDVAAMMGFGGFGSSKK 202

The following BLAST results are available for this feature:
BLAST of Cla019956 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZMAT2_HUMAN1.7e-4953.19Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1 SV=1[more]
ZMAT2_MOUSE1.7e-4953.19Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1[more]
SNU23_CAEEL2.3e-3838.60Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans GN=snu... [more]
SNU23_YEAST2.1e-1026.8723 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerev... [more]
BLAST of Cla019956 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM02_CUCSA8.7e-10999.01Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033890 PE=4 SV=1[more]
D7UA14_VITVI4.8e-9989.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01370 PE=4 SV=... [more]
A0A0B0MXS7_GOSAR2.0e-9790.95Zinc finger matrin-type 2 OS=Gossypium arboreum GN=F383_30785 PE=4 SV=1[more]
A0A061F406_THECC2.6e-9789.50C2H2 and C2HC zinc fingers superfamily protein isoform 1 OS=Theobroma cacao GN=T... [more]
A0A0D2S4W9_GOSRA5.9e-9790.45Uncharacterized protein OS=Gossypium raimondii GN=B456_004G237200 PE=4 SV=1[more]
BLAST of Cla019956 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070162|ref|XP_008453709.1|2.5e-109100.00PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo][more]
gi|778667012|ref|XP_011648855.1|1.3e-10899.01PREDICTED: zinc finger matrin-type protein 2 [Cucumis sativus][more]
gi|359487537|ref|XP_002282596.2|6.9e-9989.71PREDICTED: zinc finger matrin-type protein 2 isoform X2 [Vitis vinifera][more]
gi|1009116675|ref|XP_015874903.1|9.9e-9889.66PREDICTED: zinc finger matrin-type protein 2 isoform X1 [Ziziphus jujuba][more]
gi|728824066|gb|KHG05590.1|2.9e-9790.95Zinc finger matrin-type 2 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR022755Znf_C2H2_jaz
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU29029watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU79259watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019956Cla019956.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU29029WMU29029transcribed_cluster
WMU79259WMU79259transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 81..115
score: 2.
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 84..109
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 144..181
score: -coord: 116..136
score: -coord: 22..42
scor
NoneNo IPR availablePANTHERPTHR23067DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEINcoord: 4..202
score: 1.2
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 79..125
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019956Cla97C02G040860Watermelon (97103) v2wmwmbB316
Cla019956Csa2G033890Cucumber (Chinese Long) v2cuwmB147
Cla019956MELO3C004198Melon (DHL92) v3.5.1mewmB418
Cla019956ClCG02G015080Watermelon (Charleston Gray)wcgwmB197
Cla019956CSPI02G04570Wild cucumber (PI 183967)cpiwmB149
Cla019956Cucsa.090800Cucumber (Gy14) v1cgywmB105
Cla019956CmaCh12G010380Cucurbita maxima (Rimu)cmawmB170
Cla019956CmoCh12G010480Cucurbita moschata (Rifu)cmowmB156
Cla019956Lsi11G006190Bottle gourd (USVL1VR-Ls)lsiwmB107
Cla019956Cp4.1LG07g08710Cucurbita pepo (Zucchini)cpewmB806
Cla019956CsGy2G004710Cucumber (Gy14) v2cgybwmB140
Cla019956MELO3C004198.2Melon (DHL92) v3.6.1medwmB407
Cla019956Carg23270Silver-seed gourdcarwmB0885
Cla019956CsaV3_2G006940Cucumber (Chinese Long) v3cucwmB159
Cla019956Bhi06G001321Wax gourdwgowmB135
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019956Watermelon (97103) v2wmwmbB344
Cla019956Watermelon (97103) v1wmwmB091
Cla019956Watermelon (97103) v1wmwmB161
Cla019956Cucurbita maxima (Rimu)cmawmB348
Cla019956Cucurbita maxima (Rimu)cmawmB764
Cla019956Cucurbita maxima (Rimu)cmawmB873
Cla019956Cucurbita moschata (Rifu)cmowmB344
Cla019956Cucurbita moschata (Rifu)cmowmB757
Cla019956Melon (DHL92) v3.5.1mewmB282
Cla019956Watermelon (Charleston Gray)wcgwmB242
Cla019956Watermelon (Charleston Gray)wcgwmB340
Cla019956Cucumber (Chinese Long) v2cuwmB068
Cla019956Cucurbita pepo (Zucchini)cpewmB113
Cla019956Bottle gourd (USVL1VR-Ls)lsiwmB035
Cla019956Bottle gourd (USVL1VR-Ls)lsiwmB409
Cla019956Cucumber (Gy14) v2cgybwmB068
Cla019956Melon (DHL92) v3.6.1medwmB275
Cla019956Silver-seed gourdcarwmB0071
Cla019956Silver-seed gourdcarwmB0563
Cla019956Cucumber (Chinese Long) v3cucwmB077