Cla019940 (gene) Watermelon (97103) v1

Overview
NameCla019940
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e
LocationChr2 : 25604816 .. 25606727 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGTGGCAAGAGCAAGAAGACCAAAAGGACAGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTTAAGGTTCGTTTTTCTAATCTTCATTGGTTACGCGCTGCTTACGGGCTCTTGCTTTCATGTGGCTTTTTCTTAGAGTATGGAGATAAATTCTAATGCCCTATGGAATAGTATGTTGTGATTTAAGTTAAGATATCGTGAATGGAAAATGGAGTTTCAAATCTAATTCTGCAAGCATTGTTTGGAACTTCATCCATTTGTTTCTTACGTGTTGTCCGCTCGTATTTGATTAGAAAGTAGAGGAACATTTACACGCGGTGATGATATATGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCAAGGAATGAACTATTTCCACATTTATCTGAGCACTGGTTTAGATTTAAATGTTCTTGTTCAATTTGAACTATGAAGCAGAGTATATTGTTACTTATTGGCCATTAATAAAACTTGATTTCTGAAGTTTAGATTTGGAACCTTTTTTGTACTCATGGGGTCGATGTTTTAATTTCTTCTTTATTTATAGTTTGATTGGAATGAGATTGTTTTCTCTGCCGCAATGATGAGATATGTGATACCCAGCTCATTATGAGACTTTCTAAAGGTCAAGGACTGGACTTAATCCACATATTTATCTGAGCTCAAAATATTCTATCCTAAACGTTCCTTTCATTTTTTTAGAAGTTGATGGTTCAGTCACTGGCTATATTTTCTCTGTATTTTGAAACGATGTTTGGACATTTCAATATCAAATTAAGTCTTCCTTTCGTCCTGATGGAGAGACAGATTGTTCCCTGTGATGCTTCAATTTTTTAACCATGCTAATACTGATCACACAATGATTGATCTTCAACTTCATTCTGAGGGAACTAGCCTGTAGTCTTATATCAATTATTTCCAGAAGAGCTTTGTGTTTGTTTGCATATTTATATGGTTGGGGGTTGACTCTGGACTCTTTTCTGAGGTGAATCATATATGATTTGTTCCATGTTATATTCATAACATTTTTTCTATGTTAATTATGCCTATTTGAGTTGCTTAAATAACAGATCTTTATCTTGTTTACTGAGTTCAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAACTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGGCACCAATTTCGCTATCCAGACTTATCAAGTACATGAAGGGAAAGGTGTGTGCTTTCGTTATGCATTACTTGTTCTTTACATTTGGTTTCATGTTTGCAGGAGTATTATTTTTCATTGTCTAAATTCTCTTGTGGTTAACATGGTATAGGAAGAAAAAATTGCCGTCATTGTTGGAACTGTGACCGATGACATTCGCGTATATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAGGTTTACTGAGACGGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCTTGAGGGCTCCTCTTGGACAGAATACGGTACGATTGTATGCCCCATCTCACACTCAAACACACAACATCTGTTATGTCAAAGCAACTGTGATGCTTATAAAATGCTCGTGAATGTTGTTATGCATGCCTCTGTCATGCTTATTTTAGAAGCCATCAGTATGTCAAACAACATGGACGAATGCTTATATTCAGACTTAATGTTCTGTTAATTTTGCTTTTGAAGGTTCTTCTTCGTGGACCAAAGAACTCTCGTGAAGCTGTGAAGCACTTTGGTCCGGCTCCTGGTGTGCCTCACAGCCACACAAAACCGTACGTTAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

mRNA sequence

TTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGTGGCAAGAGCAAGAAGACCAAAAGGACAGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTTAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAACTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGGCACCAATTTCGCTATCCAGACTTATCAAGTACATGAAGGGAAAGGAAGAAAAAATTGCCGTCATTGTTGGAACTGTGACCGATGACATTCGCGTATATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAGGTTTACTGAGACGGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCTTGAGGGCTCCTCTTGGACAGAATACGGTTCTTCTTCGTGGACCAAAGAACTCTCGTGAAGCTGTGAAGCACTTTGGTCCGGCTCCTGGTGTGCCTCACAGCCACACAAAACCGTACGTTAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

Coding sequence (CDS)

TTCCTTTCATTACAGGGGATCGATCTTGTAGCAGGTGGCAAGAGCAAGAAGACCAAAAGGACAGCCCCCAAGTCCGATGATATCTACCTCAAACTCCTTGTTAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAACTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGGCACCAATTTCGCTATCCAGACTTATCAAGTACATGAAGGGAAAGGAAGAAAAAATTGCCGTCATTGTTGGAACTGTGACCGATGACATTCGCGTATATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAGGTTTACTGAGACGGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCTTGAGGGCTCCTCTTGGACAGAATACGGTTCTTCTTCGTGGACCAAAGAACTCTCGTGAAGCTGTGAAGCACTTTGGTCCGGCTCCTGGTGTGCCTCACAGCCACACAAAACCGTACGTTAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

Protein sequence

FLSLQGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAPISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV
Homology
[Close]
BLAST of Cla019940 vs. Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 2.9e-91
Identity = 163/186 (87.63%), Postives = 179/186 (96.24%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNKAP
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRL+++M GK++KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRK 181

Query: 186 SRGFRV 192
           SRGF+V
Sbjct: 182 SRGFKV 187

[Close]
BLAST of Cla019940 vs. Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2)

HSP 1 Score: 334.7 bits (857), Expect = 6.5e-91
Identity = 162/186 (87.10%), Postives = 177/186 (95.16%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNKAP
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRL+++M GKE+KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLT
Sbjct: 62  LSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR 
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRK 181

Query: 186 SRGFRV 192
           SRGF+V
Sbjct: 182 SRGFKV 187

[Close]
BLAST of Cla019940 vs. Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.4e-85
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 1 

Query: 8   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAPIS 67
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+ P+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 68  LSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 127
           LSRLIKYM+GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 128 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 187
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 188 GFRV 192
           GFRV
Sbjct: 181 GFRV 183

[Close]
BLAST of Cla019940 vs. Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 301.2 bits (770), Expect = 8.0e-81
Identity = 151/187 (80.75%), Postives = 165/187 (88.24%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNKAP
Sbjct: 2   GIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRL++YM GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLT
Sbjct: 62  LSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLT 121

Query: 126 FDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 185
           FDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+R
Sbjct: 122 FDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRR 181

Query: 186 NSRGFRV 192
            SRGF+V
Sbjct: 182 RSRGFKV 188

[Close]
BLAST of Cla019940 vs. Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-64
Identity = 120/177 (67.80%), Postives = 146/177 (82.49%), Query Frame = 1 

Query: 16  KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAPISLSRLIKYM 75
           +K +RT PKS D+YL+LLVKLYR+L RRTG+ FN +ILKRLFMSK+ + PISLS+++++M
Sbjct: 11  RKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFM 70

Query: 76  K--GKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRA 135
           K  G+E   AVIVGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+
Sbjct: 71  KKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRS 130

Query: 136 PLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 191
           P G  TVLL+G +N+REAVKHFGPAPGVPHSH KP VRSKGRKFERARG+R S G++
Sbjct: 131 PTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187

[Close]
BLAST of Cla019940 vs. TrEMBL
Match: A0A0A0LFX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032220 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.4e-95
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           ISLSRLIKYM GKE +IAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 186 SRGFRV 192
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]
BLAST of Cla019940 vs. TrEMBL
Match: W9QQ74_9ROSA (60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 4.0e-95
Identity = 176/186 (94.62%), Postives = 185/186 (99.46%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNK P
Sbjct: 12  GIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 71

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI++MKGKE+K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 72  LSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 131

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 132 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 191

Query: 186 SRGFRV 192
           SRGFRV
Sbjct: 192 SRGFRV 197

[Close]
BLAST of Cla019940 vs. TrEMBL
Match: A0A0D2TP40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.6e-94
Identity = 176/186 (94.62%), Postives = 184/186 (98.92%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI++MKGKE+KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK+ERARG+RN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRRN 181

Query: 186 SRGFRV 192
           S+GFRV
Sbjct: 182 SKGFRV 187

[Close]
BLAST of Cla019940 vs. TrEMBL
Match: A0A0D2P770_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G052100 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94
Identity = 176/186 (94.62%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI+YMKGKE+KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQYMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRS GRKFERARG+RN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRKFERARGRRN 181

Query: 186 SRGFRV 192
           S+GFRV
Sbjct: 182 SKGFRV 187

[Close]
BLAST of Cla019940 vs. TrEMBL
Match: A0A0B0MCR2_GOSAR (60S ribosomal L18-2-like protein OS=Gossypium arboreum GN=F383_16528 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94
Identity = 176/186 (94.62%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI+YMKGKE+KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQYMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRS GRKFERARG+RN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRKFERARGRRN 181

Query: 186 SRGFRV 192
           S+GFRV
Sbjct: 182 SKGFRV 187

[Close]
BLAST of Cla019940 vs. NCBI nr
Match: gi|659070222|ref|XP_008454015.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 2.3e-96
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           ISLSRLIKYMKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 186 SRGFRV 192
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]
BLAST of Cla019940 vs. NCBI nr
Match: gi|449454059|ref|XP_004144773.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           ISLSRLIKYM GKE +IAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  ISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181

Query: 186 SRGFRV 192
           SRG+RV
Sbjct: 182 SRGYRV 187

[Close]
BLAST of Cla019940 vs. NCBI nr
Match: gi|703068658|ref|XP_010088293.1| (60S ribosomal protein L18-3 [Morus notabilis])

HSP 1 Score: 355.5 bits (911), Expect = 5.7e-95
Identity = 176/186 (94.62%), Postives = 185/186 (99.46%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNK P
Sbjct: 12  GIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 71

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI++MKGKE+K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 72  LSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 131

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 132 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 191

Query: 186 SRGFRV 192
           SRGFRV
Sbjct: 192 SRGFRV 197

[Close]
BLAST of Cla019940 vs. NCBI nr
Match: gi|823197185|ref|XP_012434195.1| (PREDICTED: 60S ribosomal protein L18-2 [Gossypium raimondii])

HSP 1 Score: 352.8 bits (904), Expect = 3.7e-94
Identity = 176/186 (94.62%), Postives = 184/186 (98.92%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI++MKGKE+KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK+ERARG+RN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRRN 181

Query: 186 SRGFRV 192
           S+GFRV
Sbjct: 182 SKGFRV 187

[Close]
BLAST of Cla019940 vs. NCBI nr
Match: gi|823147148|ref|XP_012473484.1| (PREDICTED: 60S ribosomal protein L18-2-like [Gossypium raimondii])

HSP 1 Score: 352.4 bits (903), Expect = 4.8e-94
Identity = 176/186 (94.62%), Postives = 183/186 (98.39%), Query Frame = 1 

Query: 6   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAP 65
           GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNK P
Sbjct: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPP 61

Query: 66  ISLSRLIKYMKGKEEKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 125
           +SLSRLI+YMKGKE+KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 62  LSLSRLIQYMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121

Query: 126 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 185
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRS GRKFERARG+RN
Sbjct: 122 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRKFERARGRRN 181

Query: 186 SRGFRV 192
           S+GFRV
Sbjct: 182 SKGFRV 187

The following BLAST results are available for this feature:
BLAST of Cla019940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL183_ARATH2.9e-9187.6360S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1[more]
RL182_ARATH6.5e-9187.1060S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2[more]
RL18_CICAR2.4e-8585.8760S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1[more]
RL181_ARATH8.0e-8180.75Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3[more]
RL18_TIMBA1.0e-6467.8060S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1[more]
BLAST of Cla019940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFX7_CUCSA1.4e-9597.31Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032220 PE=4 SV=1[more]
W9QQ74_9ROSA4.0e-9594.6260S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1[more]
A0A0D2TP40_GOSRA2.6e-9494.62Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1[more]
A0A0D2P770_GOSRA3.4e-9494.62Uncharacterized protein OS=Gossypium raimondii GN=B456_004G052100 PE=4 SV=1[more]
A0A0B0MCR2_GOSAR3.4e-9494.6260S ribosomal L18-2-like protein OS=Gossypium arboreum GN=F383_16528 PE=4 SV=1[more]
BLAST of Cla019940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070222|ref|XP_008454015.1|2.3e-9697.85PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo][more]
gi|449454059|ref|XP_004144773.1|2.0e-9597.31PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus][more]
gi|703068658|ref|XP_010088293.1|5.7e-9594.6260S ribosomal protein L18-3 [Morus notabilis][more]
gi|823197185|ref|XP_012434195.1|3.7e-9494.62PREDICTED: 60S ribosomal protein L18-2 [Gossypium raimondii][more]
gi|823147148|ref|XP_012473484.1|4.8e-9494.62PREDICTED: 60S ribosomal protein L18-2-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000039Ribosomal_L18e
IPR021131Ribosomal_L18e/L15P
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006457 protein folding
biological_process GO:0006950 response to stress
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU23896watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU54574watermelon EST collection version 2.0transcribed_cluster
WMU58793watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019940Cla019940.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU23896WMU23896transcribed_cluster
WMU54574WMU54574transcribed_cluster
WMU58793WMU58793transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 6..191
score: 1.0E
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 6..191
score: 2.7
IPR021131Ribosomal protein L18e/L15PunknownSSF52080Ribosomal proteins L15p and L18ecoord: 24..143
score: 1.96
NoneNo IPR availableGENE3DG3DSA:3.100.10.10coord: 25..143
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019940Cla97C02G041040Watermelon (97103) v2wmwmbB316
Cla019940Csa2G032220Cucumber (Chinese Long) v2cuwmB147
Cla019940Csa1G569250Cucumber (Chinese Long) v2cuwmB068
Cla019940MELO3C015293Melon (DHL92) v3.5.1mewmB282
Cla019940MELO3C004215Melon (DHL92) v3.5.1mewmB418
Cla019940ClCG02G015260Watermelon (Charleston Gray)wcgwmB197
Cla019940CSPI02G04390Wild cucumber (PI 183967)cpiwmB149
Cla019940CSPI01G26310Wild cucumber (PI 183967)cpiwmB073
Cla019940Cucsa.090970Cucumber (Gy14) v1cgywmB105
Cla019940CmaCh05G010970Cucurbita maxima (Rimu)cmawmB764
Cla019940CmaCh12G010520Cucurbita maxima (Rimu)cmawmB170
Cla019940CmoCh05G011120Cucurbita moschata (Rifu)cmowmB757
Cla019940Lsi11G006050Bottle gourd (USVL1VR-Ls)lsiwmB107
Cla019940Lsi06G000940Bottle gourd (USVL1VR-Ls)lsiwmB409
Cla019940Cp4.1LG07g08880Cucurbita pepo (Zucchini)cpewmB806
Cla019940Cp4.1LG11g09040Cucurbita pepo (Zucchini)cpewmB113
Cla019940CsGy2G004530Cucumber (Gy14) v2cgybwmB140
Cla019940CsGy1G025570Cucumber (Gy14) v2cgybwmB068
Cla019940MELO3C015293.2Melon (DHL92) v3.6.1medwmB275
Cla019940MELO3C004215.2Melon (DHL92) v3.6.1medwmB407
Cla019940Carg12025Silver-seed gourdcarwmB0563
Cla019940Carg23284Silver-seed gourdcarwmB0885
Cla019940CsaV3_1G038670Cucumber (Chinese Long) v3cucwmB077
Cla019940CsaV3_2G006750Cucumber (Chinese Long) v3cucwmB159
Cla019940Bhi06G001296Wax gourdwgowmB135
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla019940Cla005209Watermelon (97103) v1wmwmB091
The following block(s) are covering this gene:
GeneOrganismBlock
Cla019940Silver-seed gourdcarwmB0071
Cla019940Watermelon (97103) v2wmwmbB344
Cla019940Watermelon (97103) v1wmwmB161
Cla019940Cucurbita maxima (Rimu)cmawmB348
Cla019940Cucurbita maxima (Rimu)cmawmB873
Cla019940Cucurbita moschata (Rifu)cmowmB156
Cla019940Cucurbita moschata (Rifu)cmowmB344
Cla019940Watermelon (Charleston Gray)wcgwmB242
Cla019940Watermelon (Charleston Gray)wcgwmB340