Cla018876 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018876
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Glutaredoxin C4 (AHRD V1 ***- A9PBC3_POPTR); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses
Location	Chr6 : 23087695 .. 23089661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGACGGTGAGTATGAGGAAGATGCTGACGGTATCAGCAGCCATGGTCTGCGCCGTAGCCGTAGCGTCTATATGCGGGGCTTCATCTTCCCCAGAATCACGCTTCATCAAAAACACCATCGCCTCCCATCAGATCGTCATATTCTCCAAGTCCTATTGCCCGTATTTTTCTTTCTCCTTTCTCTTTCTTATCTTAATCGATTTGTTCATACTCCCAATGTGGAGATCTAATTAGTGTTGTTCTACAATTGGAACCAGATCGGGGATTGATGAATGATTTGGGGGGGGGGGGGGGGGGGGGGTCTTCTCTTATGTTGTTGTTGTTGTGTAATGTAGGTACTGTAGAAGGGCAAAAGCTGTTTTCAAGGAATTGCACAAAGTTCCTCATGTTGTTGAGCTGGATCAAAGAGGTACCTGCATAATCTGCAATTACTCCACTGGCTTAAATCTGTTTGAAACTCAGTATGCTTGTTTCTTGTGTCCGAGGTCCTTTCTTTATATCTGGATTTCGGTCAATTTTATATGAAAATCTTGTTCTGGCTTATTCTCTCCGTACTAAGAAAATATTGGAGTGTGATATTACACTTGATATGGGCATTCTTGAGTTTTTTGAAGCTCAAGCTCAAGTTTTAAGTTAATCGCTTATTTTTATTCCCATAGCAAACTCCGTCTGCTTCTCTTCTCATTTCTTTTCTGATGATTTCGTTATCATTGTTTAAAAGAACGATCTGGTCTTACTTAATTGTTACGGAGTAGTTAGAGAATCTGTGCTTAGTATTATTGGCTCTAGCGTCTTGAAATGGTGATTTCCTGCAAATGAAATACTTGTGTATTAGGTATTGTGTGACATGATGCTCTGTAAAATGCTTTCCAAATTCAAAACTAACATGATTGTTTGGGATAGTCTATTTTCTTCATATGAAATTCTCAGTCGATGTGAGTATAGTTCAACTGGTTTAGAAGTATATCCTCAACTGAGAGGTTAGAGTTTCAAATCCCCCGCCTCATATATGCTATTGTACTCGAAAAGAAAAAAAGAATCAAATTACTCTACCTAATTAGAATCACACACTCAGATCTGCCCCCAAACAATGGGTTAAGAACTAGGAAGTGTGTCCTTTTGGAAGGCAATTCCTTCTAATGTATTTGTGTTTTTTTGAGTTAAGAGAGGGGGCAAAGAGTCGGAAATGGTAGAGGAAGGAAGAAAACAGCAATGAAAGGGAGTAACGGTGTGCAAGAGTGTGTATGGTTAGTTGGTGCTTGAAATGTCTAATTTCCTGAGAAAAAGTTTAGGTAATGGGTCGACATTTTATCAAATGTATTTTGTTGTTCAAAATCTTCTTCTATTTATCCATTTTTAGTTGATATGGAGGTTCTTTGTTTCGTTTCTTCTCTTTTGTTTCCCTTTTTGACGAGAGTGGGGAGAATTAAACTGCCTAGCAAAACGGTTATCAATGAAAGCAGTTATTTCTTCAGAAGTATTTGTGGGCTTGGTTTTTTTTTTTTTCTTTTTTATGTTCTTGTATTATTTCTTTCTTTCTCAATCAAAGTAGTTGTTTCTAAAAATCCAAAACGATTATTAATTAACATATATCTCGCTCTTGTTTCCATATCTATTTATATCCAGTGTTAACTCTATCTGTTCTATTACTCATAACCTAAAAGTTAATTATTCCTAGAATATGGATCTGTTTTGCACAGATGATGGGAGTGTCATTCAAGATGCTCTAAGTGCACTTATTGGAAGGCGGACTGTACCTCAAGTGTTCATAGATGGAAAACACTTGGGCGGATCGGATGGTAATTGGCTCTTCTTTGACAACTTATTGTCTGTAATATATTTTTCTCCAAAGTACTTTTAACTCATTGAAACCCTCATTTCCAGATACTGTTGAAGCATATGAGAGTGGGAAGTTGGGTAAACTCCTGGGTATCAAGGACGACCACAAAGCTGATCTTTGA

mRNA sequence

ATGGCGGCGACGGTGAGTATGAGGAAGATGCTGACGGTATCAGCAGCCATGGTCTGCGCCGTAGCCGTAGCGTCTATATGCGGGGCTTCATCTTCCCCAGAATCACGCTTCATCAAAAACACCATCGCCTCCCATCAGATCGTCATATTCTCCAAGTCCTATTGCCCGTACTGTAGAAGGGCAAAAGCTGTTTTCAAGGAATTGCACAAAGTTCCTCATGTTGTTGAGCTGGATCAAAGAGATGATGGGAGTGTCATTCAAGATGCTCTAAGTGCACTTATTGGAAGGCGGACTGTACCTCAAGTGTTCATAGATGGAAAACACTTGGGCGGATCGGATGATACTGTTGAAGCATATGAGAGTGGGAAGTTGGGTAAACTCCTGGGTATCAAGGACGACCACAAAGCTGATCTTTGA

Coding sequence (CDS)

ATGGCGGCGACGGTGAGTATGAGGAAGATGCTGACGGTATCAGCAGCCATGGTCTGCGCCGTAGCCGTAGCGTCTATATGCGGGGCTTCATCTTCCCCAGAATCACGCTTCATCAAAAACACCATCGCCTCCCATCAGATCGTCATATTCTCCAAGTCCTATTGCCCGTACTGTAGAAGGGCAAAAGCTGTTTTCAAGGAATTGCACAAAGTTCCTCATGTTGTTGAGCTGGATCAAAGAGATGATGGGAGTGTCATTCAAGATGCTCTAAGTGCACTTATTGGAAGGCGGACTGTACCTCAAGTGTTCATAGATGGAAAACACTTGGGCGGATCGGATGATACTGTTGAAGCATATGAGAGTGGGAAGTTGGGTAAACTCCTGGGTATCAAGGACGACCACAAAGCTGATCTTTGA

Protein sequence

MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL

Homology

[Close]

BLAST of Cla018876 vs. Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-40
Identity = 80/129 (62.02%), Postives = 106/129 (82.17%), Query Frame = 1


Query: 10  MLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELH 69
           M+ +  A+V  +++ S   A+SSPE+ F+K TI+SH+IVIFSKSYCPYC++AK+VF+EL 
Sbjct: 9   MVMLLVALVTFISMVS--SAASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELD 68

Query: 70  KVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYESGKLGKLLG 129
           +VP+VVELD+R+DG  IQ AL  ++GRRTVPQVFI+GKHLGGSDDTV+AYESG+L KLLG
Sbjct: 69  QVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLG 128

Query: 130 IKDDHKADL 139
           +  + +A+L
Sbjct: 129 VSGNKEAEL 135

[Close]

BLAST of Cla018876 vs. Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-39
Identity = 87/140 (62.14%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAA +  R    ++AA + A+A      + ++ +S F+K+T+ +H +VIFSKSYCPYCRR
Sbjct: 1   MAALLGRR--FGMAAAALIALAALGSAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRR 60

Query: 61  AKAVFKELH--KVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEA 120
           AKAVFKEL   K P+VVELDQR+DG  IQDALS ++GRRTVPQVF+ GKHLGGSDDTVEA
Sbjct: 61  AKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEA 120

Query: 121 YESGKLGKLLGIKDDHKADL 139
           YESGKL KLL I  D K DL
Sbjct: 121 YESGKLAKLLNI--DVKEDL 136

[Close]

BLAST of Cla018876 vs. Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-28
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 6   SMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVF 65
           S R+++  +  +   +   S    +++  S F++N I S++IVIFSKSYCPYC R+K +F
Sbjct: 5   SPRRVVVAALLLFVVLCDLSNSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIF 64

Query: 66  KELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYESGKLG 125
            +L + P VVELDQR+DG  IQ  L   +GRRTVPQVF++GKH+GGSDD   A ESG+L 
Sbjct: 65  SQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQ 124

Query: 126 KLL 129
           KLL
Sbjct: 125 KLL 127

[Close]

BLAST of Cla018876 vs. Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.7e-28
Identity = 60/122 (49.18%), Postives = 85/122 (69.67%), Query Frame = 1


Query: 8   RKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKE 67
           R  + ++  ++  +A A    A+ SP S F++N I S++I IFSK+YCPY  RAK +F++
Sbjct: 5   RAAVPIAVFLLLVLAEADPAAATRSP-SAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRD 64

Query: 68  LHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYESGKLGKL 127
           L + P++VELD R+DG  IQ  L  L+GR TVPQVF++G+H+GGSDDT  A+ +G+L KL
Sbjct: 65  LKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKL 124

Query: 128 LG 130
           LG
Sbjct: 125 LG 125

[Close]

BLAST of Cla018876 vs. Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1


Query: 39  KNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRT 98
           K T+AS  +V++SKSYCP+C R K +F++L      +ELD   DGS +Q AL+   G+RT
Sbjct: 7   KETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRT 66

Query: 99  VPQVFIDGKHLGGSDDTVEAYESGKLGKLL 129
           VP VFI+GKH+GG DDT+     GKL  LL
Sbjct: 67  VPNVFINGKHIGGCDDTLALNNEGKLVPLL 96

[Close]

BLAST of Cla018876 vs. TrEMBL
Match: A0A0A0LXH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427520 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-62
Identity = 123/138 (89.13%), Postives = 132/138 (95.65%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+CGASSSPES FIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AKAVFKELHKVPHVVELDQRDDGS +Q+ALS L GRRTVPQVFIDGKH+GGSDDT+EAYE
Sbjct: 61  AKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLEAYE 120

Query: 121 SGKLGKLLGIKDDHKADL 139
           SG+L KLLGIK+DHKADL
Sbjct: 121 SGELRKLLGIKEDHKADL 137

[Close]

BLAST of Cla018876 vs. TrEMBL
Match: A0A0A0LUU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427530 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATV   +M  +      A         SSSPES F+K TIASHQ VIFSKSYCPYC  
Sbjct: 1   MAATVVTMRMRMIPTVRAMA---------SSSPESLFVKKTIASHQTVIFSKSYCPYCET 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AK VFK+L+KVPHVVELDQRDDGS IQDALSAL+GR TVPQVFIDGKH+GGSDDTVEAYE
Sbjct: 61  AKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYE 120

Query: 121 SGKLGKLLGIKD 133
           SG+LGKLLGI++
Sbjct: 121 SGELGKLLGIEE 123

[Close]

BLAST of Cla018876 vs. TrEMBL
Match: A9PBC3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13330g PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-43
Identity = 88/138 (63.77%), Postives = 110/138 (79.71%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MA  + +  +L  + A+   V  AS+  A+ SPE+ F+K TI+SHQIVIFSKSYCPYC++
Sbjct: 1   MATRIRLPSIL--ATAVTLTVLAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKK 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AK VFKEL++ PHVVELDQR+DG  IQDA+S ++GRRTVPQVFIDGKH+GGSDDTVEAYE
Sbjct: 61  AKGVFKELNQTPHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYE 120

Query: 121 SGKLGKLLGIKDDHKADL 139
           SG+L KLLG+  + K DL
Sbjct: 121 SGELAKLLGVASEQKDDL 136

[Close]

BLAST of Cla018876 vs. TrEMBL
Match: Q8S3L1_9ROSI (Glutaredoxin OS=Populus tremula x Populus tremuloides PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.7e-43
Identity = 87/137 (63.50%), Postives = 109/137 (79.56%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MA  + +  +L  + A+   V  AS+  A+ SPE+ F+K TI+SHQIVIFSKSYCPYC++
Sbjct: 1   MATRIRLPSIL--ATAVTLTVLAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKK 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AK VFKEL++ PHVVELDQR+DG  IQDA+S ++GRRTVPQVFIDGKH+GGSDDTVEAYE
Sbjct: 61  AKGVFKELNQTPHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYE 120

Query: 121 SGKLGKLLGIKDDHKAD 138
           SG+L KLLG+  + K D
Sbjct: 121 SGELAKLLGVASEQKDD 135

[Close]

BLAST of Cla018876 vs. TrEMBL
Match: A0A022PWZ8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015927mg PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-41
Identity = 87/137 (63.50%), Postives = 105/137 (76.64%), Query Frame = 1


Query: 2   AATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRA 61
           A TVS  +   V A +   + +AS  GA     S F+K TI+SH IVIFSKSYCPYCRRA
Sbjct: 4   AITVSSFRFAAVIAFLFVGILLASTVGAKPKSPSAFVKKTISSHSIVIFSKSYCPYCRRA 63

Query: 62  KAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYES 121
           K VFKEL++VP+VVELD+R+DG  IQDALS ++GRRTVPQVFI+GKHLGGSDDTVEAYES
Sbjct: 64  KGVFKELNQVPYVVELDEREDGGEIQDALSKIVGRRTVPQVFINGKHLGGSDDTVEAYES 123

Query: 122 GKLGKLLGIKDDHKADL 139
           G L KLLG+  + + +L
Sbjct: 124 GALAKLLGLATEEEEEL 140

[Close]

BLAST of Cla018876 vs. NCBI nr
Match: gi|449457215|ref|XP_004146344.1| (PREDICTED: glutaredoxin-C4-like [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.5e-62
Identity = 123/138 (89.13%), Postives = 132/138 (95.65%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+CGASSSPES FIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AKAVFKELHKVPHVVELDQRDDGS +Q+ALS L GRRTVPQVFIDGKH+GGSDDT+EAYE
Sbjct: 61  AKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLEAYE 120

Query: 121 SGKLGKLLGIKDDHKADL 139
           SG+L KLLGIK+DHKADL
Sbjct: 121 SGELRKLLGIKEDHKADL 137

[Close]

BLAST of Cla018876 vs. NCBI nr
Match: gi|659107140|ref|XP_008453540.1| (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-60
Identity = 121/138 (87.68%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+C ASSSPES FIKN IASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AKAVFKEL+KVPHVVELDQRDDGS +Q+ALS L GRRTVPQVFIDGKH+GGSDDTVEAYE
Sbjct: 61  AKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVEAYE 120

Query: 121 SGKLGKLLGIKDDHKADL 139
           SG+L KLLGIK+DHKADL
Sbjct: 121 SGELSKLLGIKEDHKADL 137

[Close]

BLAST of Cla018876 vs. NCBI nr
Match: gi|449457217|ref|XP_004146345.1| (PREDICTED: glutaredoxin-C4-like [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-43
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATV   +M  +      A         SSSPES F+K TIASHQ VIFSKSYCPYC  
Sbjct: 1   MAATVVTMRMRMIPTVRAMA---------SSSPESLFVKKTIASHQTVIFSKSYCPYCET 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AK VFK+L+KVPHVVELDQRDDGS IQDALSAL+GR TVPQVFIDGKH+GGSDDTVEAYE
Sbjct: 61  AKTVFKDLNKVPHVVELDQRDDGSAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYE 120

Query: 121 SGKLGKLLGIKD 133
           SG+LGKLLGI++
Sbjct: 121 SGELGKLLGIEE 123

[Close]

BLAST of Cla018876 vs. NCBI nr
Match: gi|224144252|ref|XP_002325236.1| (hypothetical protein POPTR_0018s13330g [Populus trichocarpa])

HSP 1 Score: 182.6 bits (462), Expect = 4.8e-43
Identity = 88/138 (63.77%), Postives = 110/138 (79.71%), Query Frame = 1


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MA  + +  +L  + A+   V  AS+  A+ SPE+ F+K TI+SHQIVIFSKSYCPYC++
Sbjct: 1   MATRIRLPSIL--ATAVTLTVLAASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKK 60

Query: 61  AKAVFKELHKVPHVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYE 120
           AK VFKEL++ PHVVELDQR+DG  IQDA+S ++GRRTVPQVFIDGKH+GGSDDTVEAYE
Sbjct: 61  AKGVFKELNQTPHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYE 120

Query: 121 SGKLGKLLGIKDDHKADL 139
           SG+L KLLG+  + K DL
Sbjct: 121 SGELAKLLGVASEQKDDL 136

[Close]

BLAST of Cla018876 vs. NCBI nr
Match: gi|743805756|ref|XP_011017730.1| (PREDICTED: glutaredoxin-C4 [Populus euphratica])

HSP 1 Score: 182.2 bits (461), Expect = 6.2e-43
Identity = 85/126 (67.46%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 13  VSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVP 72
           ++ A+   V  AS+  A+ SPE+ F++ TI+SH+IVIFSKSYCPYC+RAK VFKEL++ P
Sbjct: 11  LATAVTLTVLAASLTWAAGSPEAAFVRKTISSHKIVIFSKSYCPYCKRAKGVFKELNQTP 70

Query: 73  HVVELDQRDDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKD 132
           HVVELDQR+DG  IQDA+S ++GRRTVPQVFIDGKH+GGSDDTVEAYESGKL KLLG+  
Sbjct: 71  HVVELDQREDGHNIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGKLAKLLGVAS 130

Query: 133 DHKADL 139
           + K DL
Sbjct: 131 EQKDDL 136

The following BLAST results are available for this feature:

BLAST of Cla018876 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRXC4_ARATH	1.3e-40	62.02	Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2	[more]
GRXC8_ORYSJ	2.5e-39	62.14	Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2	[more]
GRXC3_ARATH	3.3e-28	50.41	Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1	[more]
GRXS6_ORYSJ	9.7e-28	49.18	Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1	[more]
GRXC6_ORYSJ	1.3e-19	51.11	Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2	[more]

BLAST of Cla018876 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXH3_CUCSA	2.4e-62	89.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427520 PE=4 SV=1	[more]
A0A0A0LUU4_CUCSA	1.1e-43	71.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G427530 PE=4 SV=1	[more]
A9PBC3_POPTR	3.3e-43	63.77	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13330g PE=2 SV=1	[more]
Q8S3L1_9ROSI	9.7e-43	63.50	Glutaredoxin OS=Populus tremula x Populus tremuloides PE=2 SV=1	[more]
A0A022PWZ8_ERYGU	2.4e-41	63.50	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015927mg PE=4 SV=1	[more]

BLAST of Cla018876 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457215\|ref\|XP_004146344.1\|	3.5e-62	89.13	PREDICTED: glutaredoxin-C4-like [Cucumis sativus]	[more]
gi\|659107140\|ref\|XP_008453540.1\|	1.1e-60	87.68	PREDICTED: glutaredoxin-C4-like [Cucumis melo]	[more]
gi\|449457217\|ref\|XP_004146345.1\|	1.6e-43	71.21	PREDICTED: glutaredoxin-C4-like [Cucumis sativus]	[more]
gi\|224144252\|ref\|XP_002325236.1\|	4.8e-43	63.77	hypothetical protein POPTR_0018s13330g [Populus trichocarpa]	[more]
gi\|743805756\|ref\|XP_011017730.1\|	6.2e-43	67.46	PREDICTED: glutaredoxin-C4 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002109	Glutaredoxin
IPR011767	GLR_AS
IPR011899	Glutaredoxin_euk/vir
IPR012336	Thioredoxin-like_fold
IPR014025	Glutaredoxin_subgr

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005623	cell
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0008794	arsenate reductase (glutaredoxin) activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0004362	glutathione-disulfide reductase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU06854	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU23790	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018876	Cla018876.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU23790	WMU23790	transcribed_cluster
WMU06854	WMU06854	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 47..108 score: 1.5
IPR002109	Glutaredoxin	PROFILE	PS51354	GLUTAREDOXIN_2	coord: 35..135 score: 22
IPR011767	Glutaredoxin active site	PROSITE	PS00195	GLUTAREDOXIN_1	coord: 49..64 scor
IPR011899	Glutaredoxin, eukaryotic/virial	TIGRFAMs	TIGR02180	TIGR02180	coord: 47..127 score: 2.1
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 34..128 score: 1.9
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 37..129 score: 7.36
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 47..65 score: 4.2E-16coord: 106..119 score: 4.2E-16coord: 92..105 score: 4.2
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 7..128 score: 5.5
None	No IPR available	PANTHER	PTHR10168:SF112	GLUTAREDOXIN-C4	coord: 7..128 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018876	Cla97C06G123290	Watermelon (97103) v2	wmwmbB406
Cla018876	Csa1G427520	Cucumber (Chinese Long) v2	cuwmB079
Cla018876	MELO3C017411	Melon (DHL92) v3.5.1	mewmB289
Cla018876	ClCG06G013850	Watermelon (Charleston Gray)	wcgwmB344
Cla018876	CSPI01G20730	Wild cucumber (PI 183967)	cpiwmB087
Cla018876	Cucsa.281980	Cucumber (Gy14) v1	cgywmB517
Cla018876	CmaCh10G003590	Cucurbita maxima (Rimu)	cmawmB071
Cla018876	CmoCh10G003880	Cucurbita moschata (Rifu)	cmowmB063
Cla018876	Lsi06G012260	Bottle gourd (USVL1VR-Ls)	lsiwmB414
Cla018876	Cp4.1LG18g06510	Cucurbita pepo (Zucchini)	cpewmB372
Cla018876	CsGy1G020520	Cucumber (Gy14) v2	cgybwmB080
Cla018876	MELO3C017411.2	Melon (DHL92) v3.6.1	medwmB283
Cla018876	Carg15208	Silver-seed gourd	carwmB0789
Cla018876	CsaV3_1G032050	Cucumber (Chinese Long) v3	cucwmB092
Cla018876	Bhi02G000151	Wax gourd	wgowmB685

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018876	Silver-seed gourd	carwmB0594
Cla018876	Cucumber (Chinese Long) v3	cucwmB106
Cla018876	Cucumber (Gy14) v1	cgywmB167
Cla018876	Cucurbita maxima (Rimu)	cmawmB143
Cla018876	Cucurbita moschata (Rifu)	cmowmB128
Cla018876	Cucurbita pepo (Zucchini)	cpewmB679