Cla018081 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018081
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	cDNA clone 002-144-A09 full insert sequence (Fragment) (AHRD V1 ***- B7F1C9_ORYSJ)
Location	Chr4 : 18368216 .. 18368676 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGGTATATTGTCTTTGTTTCTCTAAAATGGGTTGTATTTATTATCATTTTGAGGTTAGAAATTTTGGGTCTTTTGGGGTTGCGCGCACTATGGGAGTTGATTTCATTTAATTTGTTTAACAAGTTATTAAATGAAGCAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

mRNA sequence

ATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

Coding sequence (CDS)

ATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

Protein sequence

MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR

Homology

[Close]

BLAST of Cla018081 vs. TrEMBL
Match: A0A0A0L002_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G312810 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-45
Identity = 90/107 (84.11%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV+NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]

BLAST of Cla018081 vs. TrEMBL
Match: D7SQU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00330 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 61/107 (57.01%), Postives = 81/107 (75.70%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDFS + D+E+ IS++DDLVE L+   D+ +L QCLEH  ALQSSCD DF  VQSL+Q+
Sbjct: 1   MGDFSQSVDVEKLISYSDDLVECLRGKRDIDSLTQCLEHSSALQSSCDADFGEVQSLVQE 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           Y+KKI AC+QKT+EAK++   D E+  LEKELE E+ +  +L EE+R
Sbjct: 61  YQKKIDACKQKTDEAKSDAATDAEINFLEKELEGELQREQMLREELR 107

[Close]

BLAST of Cla018081 vs. TrEMBL
Match: A9PBN1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 59/107 (55.14%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDFS   D+E+ ISF+DDLV +LKD  D+ NL+ CL+   +L+SSCD +F+  ++LI+D
Sbjct: 1   MGDFSGKIDVEKLISFSDDLVAVLKDQRDINNLSHCLQQSHSLKSSCDAEFNDSKTLIED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YEKKI+ C++KTE+AKA  V+D +MEILE+ELE E+ K   L EE+R
Sbjct: 61  YEKKIEECKKKTEKAKAEVVSDADMEILEQELEVELQKEAALTEELR 107

[Close]

BLAST of Cla018081 vs. TrEMBL
Match: U5FPC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13040g PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-25
Identity = 59/107 (55.14%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDFS   D+E+ ISF+DDLV +LKD  D+ NL+ CL+   +L+SSCD +F+  ++LI+D
Sbjct: 1   MGDFSGKIDVEKLISFSDDLVGVLKDQRDINNLSHCLQQSHSLKSSCDAEFNDSKTLIED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YEKKI+ C++KTE+AKA  V+D +MEILE+ELE E+ K   L EE+R
Sbjct: 61  YEKKIEECKKKTEKAKAEVVSDADMEILEQELEVELQKEAALTEELR 107

[Close]

BLAST of Cla018081 vs. TrEMBL
Match: W9R4C8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013989 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-25
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGD   N DI++ IS+ DDLV +LKD  D  +L QC +  K+L+SSCD D S V++L+QD
Sbjct: 1   MGDLLQNMDIDKLISYGDDLVRVLKDKRDTNSLTQCCDGTKSLRSSCDADSSEVKNLLQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YE KI+ CRQKTE AK+  VAD+E+ +L KELEEE  +  LL+EE+R
Sbjct: 61  YENKIEECRQKTEAAKSKVVADEELHLLHKELEEECKRETLLLEELR 107

[Close]

BLAST of Cla018081 vs. NCBI nr
Match: gi|659128468|ref|XP_008464222.1| (PREDICTED: uncharacterized protein LOC103502153 isoform X2 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.0e-45
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 107

[Close]

BLAST of Cla018081 vs. NCBI nr
Match: gi|449461759|ref|XP_004148609.1| (PREDICTED: uncharacterized protein LOC101211451 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-45
Identity = 90/107 (84.11%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV+NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]

BLAST of Cla018081 vs. NCBI nr
Match: gi|700199241|gb|KGN54399.1| (hypothetical protein Csa_4G312810 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-45
Identity = 90/107 (84.11%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV+NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]

BLAST of Cla018081 vs. NCBI nr
Match: gi|659128466|ref|XP_008464221.1| (PREDICTED: uncharacterized protein LOC103502153 isoform X1 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 90/106 (84.91%), Postives = 99/106 (93.40%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEI 107
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEI
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEI 106

[Close]

BLAST of Cla018081 vs. NCBI nr
Match: gi|225439466|ref|XP_002268627.1| (PREDICTED: uncharacterized protein LOC100247080 isoform X2 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 61/107 (57.01%), Postives = 81/107 (75.70%), Query Frame = 1


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDFS + D+E+ IS++DDLVE L+   D+ +L QCLEH  ALQSSCD DF  VQSL+Q+
Sbjct: 1   MGDFSQSVDVEKLISYSDDLVECLRGKRDIDSLTQCLEHSSALQSSCDADFGEVQSLVQE 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 108
           Y+KKI AC+QKT+EAK++   D E+  LEKELE E+ +  +L EE+R
Sbjct: 61  YQKKIDACKQKTDEAKSDAATDAEINFLEKELEGELQREQMLREELR 107

The following BLAST results are available for this feature:

BLAST of Cla018081 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L002_CUCSA	3.6e-45	84.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G312810 PE=4 SV=1	[more]
D7SQU5_VITVI	1.2e-27	57.01	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00330 PE=4 SV=...	[more]
A9PBN1_POPTR	1.4e-25	55.14	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
U5FPC1_POPTR	1.9e-25	55.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13040g PE=4 SV=1	[more]
W9R4C8_9ROSA	3.2e-25	55.14	Uncharacterized protein OS=Morus notabilis GN=L484_013989 PE=4 SV=1	[more]

BLAST of Cla018081 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128468\|ref\|XP_008464222.1\|	4.0e-45	85.05	PREDICTED: uncharacterized protein LOC103502153 isoform X2 [Cucumis melo]	[more]
gi\|449461759\|ref\|XP_004148609.1\|	5.2e-45	84.11	PREDICTED: uncharacterized protein LOC101211451 [Cucumis sativus]	[more]
gi\|700199241\|gb\|KGN54399.1\|	5.2e-45	84.11	hypothetical protein Csa_4G312810 [Cucumis sativus]	[more]
gi\|659128466\|ref\|XP_008464221.1\|	1.5e-44	84.91	PREDICTED: uncharacterized protein LOC103502153 isoform X1 [Cucumis melo]	[more]
gi\|225439466\|ref\|XP_002268627.1\|	1.7e-27	57.01	PREDICTED: uncharacterized protein LOC100247080 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018081	Cla018081.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 58..98 scor
None	No IPR available	PANTHER	PTHR35730	FAMILY NOT NAMED	coord: 1..107 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018081	Cla97C04G073420	Watermelon (97103) v2	wmwmbB291
Cla018081	Csa4G312810	Cucumber (Chinese Long) v2	cuwmB338
Cla018081	MELO3C026013	Melon (DHL92) v3.5.1	mewmB575
Cla018081	ClCG04G006790	Watermelon (Charleston Gray)	wcgwmB255
Cla018081	CSPI04G16090	Wild cucumber (PI 183967)	cpiwmB345
Cla018081	Cucsa.130070	Cucumber (Gy14) v1	cgywmB218
Cla018081	CmaCh07G010790	Cucurbita maxima (Rimu)	cmawmB830
Cla018081	CmaCh03G003330	Cucurbita maxima (Rimu)	cmawmB633
Cla018081	CmoCh03G003470	Cucurbita moschata (Rifu)	cmowmB624
Cla018081	CmoCh07G011290	Cucurbita moschata (Rifu)	cmowmB820
Cla018081	Cp4.1LG19g02620	Cucurbita pepo (Zucchini)	cpewmB495
Cla018081	CsGy4G015390	Cucumber (Gy14) v2	cgybwmB314
Cla018081	MELO3C026013.2	Melon (DHL92) v3.6.1	medwmB564
Cla018081	Carg20011	Silver-seed gourd	carwmB0554
Cla018081	Carg13301	Silver-seed gourd	carwmB0578
Cla018081	CsaV3_4G026470	Cucumber (Chinese Long) v3	cucwmB355

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018081	Watermelon (97103) v2	wmwmbB285
Cla018081	Watermelon (97103) v2	wmwmbB286
Cla018081	Wax gourd	wgowmB049
Cla018081	Wax gourd	wgowmB449
Cla018081	Watermelon (97103) v1	wmwmB050
Cla018081	Watermelon (97103) v1	wmwmB155
Cla018081	Cucumber (Gy14) v1	cgywmB233
Cla018081	Cucumber (Gy14) v1	cgywmB338
Cla018081	Cucurbita maxima (Rimu)	cmawmB246
Cla018081	Cucurbita maxima (Rimu)	cmawmB806
Cla018081	Cucurbita maxima (Rimu)	cmawmB835
Cla018081	Cucurbita moschata (Rifu)	cmowmB236
Cla018081	Cucurbita moschata (Rifu)	cmowmB714
Cla018081	Cucurbita moschata (Rifu)	cmowmB797
Cla018081	Melon (DHL92) v3.5.1	mewmB175
Cla018081	Melon (DHL92) v3.5.1	mewmB325
Cla018081	Melon (DHL92) v3.5.1	mewmB379
Cla018081	Watermelon (Charleston Gray)	wcgwmB074
Cla018081	Cucumber (Chinese Long) v2	cuwmB265
Cla018081	Cucumber (Chinese Long) v2	cuwmB508
Cla018081	Cucurbita pepo (Zucchini)	cpewmB086
Cla018081	Cucurbita pepo (Zucchini)	cpewmB485
Cla018081	Cucurbita pepo (Zucchini)	cpewmB618
Cla018081	Cucurbita pepo (Zucchini)	cpewmB849
Cla018081	Bottle gourd (USVL1VR-Ls)	lsiwmB152
Cla018081	Bottle gourd (USVL1VR-Ls)	lsiwmB266
Cla018081	Bottle gourd (USVL1VR-Ls)	lsiwmB267
Cla018081	Cucumber (Gy14) v2	cgybwmB250
Cla018081	Cucumber (Gy14) v2	cgybwmB066
Cla018081	Cucumber (Gy14) v2	cgybwmB476
Cla018081	Melon (DHL92) v3.6.1	medwmB322
Cla018081	Melon (DHL92) v3.6.1	medwmB374
Cla018081	Silver-seed gourd	carwmB0151
Cla018081	Silver-seed gourd	carwmB0999
Cla018081	Cucumber (Chinese Long) v3	cucwmB073
Cla018081	Cucumber (Chinese Long) v3	cucwmB275
Cla018081	Cucumber (Chinese Long) v3	cucwmB533