CSPI04G16090 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G16090
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptioncDNA clone:002-144-A09, full insert sequence
LocationChr4 : 13424942 .. 13425388 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCTTGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGGTATGTTGACTTCCCTTCTCTAATATGGGTTTTATTCATAATCATTTGGAGGTTTGTAATTTCGGGTCTTTTGGGGGAGAGCGAATTCATATAATTTATTTAACTAGTTACTAAACGAAGCAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAGAGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTCATGGAGGAGATAAGATAA

mRNA sequence

ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCTTGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAGAGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTCATGGAGGAGATAAGATAA

Coding sequence (CDS)

ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCTTGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAGAGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTCATGGAGGAGATAAGATAA
Homology
[Close]
BLAST of CSPI04G16090 vs. TrEMBL
Match: A0A0A0L002_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G312810 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]
BLAST of CSPI04G16090 vs. TrEMBL
Match: A9PBN1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.7e-23
Identity = 57/107 (53.27%), Postives = 81/107 (75.70%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF+   ++E+L SF+DDLVA+LKD  D+ NL+ CL+   +L+SSCD +F   ++ +ED
Sbjct: 1   MGDFSGKIDVEKLISFSDDLVAVLKDQRDINNLSHCLQQSHSLKSSCDAEFNDSKTLIED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKI+ C++KTE+AKA  V+D +MEILE+ELE E+ K   L EE+R
Sbjct: 61  YEKKIEECKKKTEKAKAEVVSDADMEILEQELEVELQKEAALTEELR 107

[Close]
BLAST of CSPI04G16090 vs. TrEMBL
Match: U5FPC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13040g PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-22
Identity = 56/107 (52.34%), Postives = 80/107 (74.77%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF+   ++E+L SF+DDLV +LKD  D+ NL+ CL+   +L+SSCD +F   ++ +ED
Sbjct: 1   MGDFSGKIDVEKLISFSDDLVGVLKDQRDINNLSHCLQQSHSLKSSCDAEFNDSKTLIED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKI+ C++KTE+AKA  V+D +MEILE+ELE E+ K   L EE+R
Sbjct: 61  YEKKIEECKKKTEKAKAEVVSDADMEILEQELEVELQKEAALTEELR 107

[Close]
BLAST of CSPI04G16090 vs. TrEMBL
Match: D7SQU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00330 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.6e-22
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF+ + ++E+L S++DDLV  L+   D+ +L QCLEH   LQSSCD DF  VQS +++
Sbjct: 1   MGDFSQSVDVEKLISYSDDLVECLRGKRDIDSLTQCLEHSSALQSSCDADFGEVQSLVQE 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           Y+KKI AC++KT+EAK++   D E+  LEKELE E+ +  +L EE+R
Sbjct: 61  YQKKIDACKQKTDEAKSDAATDAEINFLEKELEGELQREQMLREELR 107

[Close]
BLAST of CSPI04G16090 vs. TrEMBL
Match: W9R4C8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013989 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGD   N +I++L S+ DDLV +LKD  D  +L QC +  K+L+SSCD D + V++ L+D
Sbjct: 1   MGDLLQNMDIDKLISYGDDLVRVLKDKRDTNSLTQCCDGTKSLRSSCDADSSEVKNLLQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YE KI+ CR+KTE AK+  VAD+E+ +L KELEEE  +  LL+EE+R
Sbjct: 61  YENKIEECRQKTEAAKSKVVADEELHLLHKELEEECKRETLLLEELR 107

[Close]
BLAST of CSPI04G16090 vs. TAIR10
Match: AT3G08880.1 (AT3G08880.1 unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+R
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]
BLAST of CSPI04G16090 vs. TAIR10
Match: AT5G01570.1 (AT5G01570.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-14
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1 

Query: 9   NIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKAC 68
           N E + S+ D+L+ +L D      L Q LE  + +  SCD+DF  +  SL+D +KK+  C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 69  REKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           +EKT+EA +    ++E+E L+KEL+EE+     L EE+R
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEELR 105

[Close]
BLAST of CSPI04G16090 vs. NCBI nr
Match: gi|449461759|ref|XP_004148609.1| (PREDICTED: uncharacterized protein LOC101211451 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 6.4e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]
BLAST of CSPI04G16090 vs. NCBI nr
Match: gi|700199241|gb|KGN54399.1| (hypothetical protein Csa_4G312810 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 6.4e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 107

[Close]
BLAST of CSPI04G16090 vs. NCBI nr
Match: gi|659128468|ref|XP_008464222.1| (PREDICTED: uncharacterized protein LOC103502153 isoform X2 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.7e-49
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+ED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR 107

[Close]
BLAST of CSPI04G16090 vs. NCBI nr
Match: gi|659128466|ref|XP_008464221.1| (PREDICTED: uncharacterized protein LOC103502153 isoform X1 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+ED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEI 107
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEI
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEI 106

[Close]
BLAST of CSPI04G16090 vs. NCBI nr
Match: gi|118483783|gb|ABK93784.1| (unknown [Populus trichocarpa])

HSP 1 Score: 114.8 bits (286), Expect = 9.6e-23
Identity = 57/107 (53.27%), Postives = 81/107 (75.70%), Query Frame = 1 

Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF+   ++E+L SF+DDLVA+LKD  D+ NL+ CL+   +L+SSCD +F   ++ +ED
Sbjct: 1   MGDFSGKIDVEKLISFSDDLVAVLKDQRDINNLSHCLQQSHSLKSSCDAEFNDSKTLIED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR 108
           YEKKI+ C++KTE+AKA  V+D +MEILE+ELE E+ K   L EE+R
Sbjct: 61  YEKKIEECKKKTEKAKAEVVSDADMEILEQELEVELQKEAALTEELR 107

The following BLAST results are available for this feature:
BLAST of CSPI04G16090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G16090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L002_CUCSA4.4e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G312810 PE=4 SV=1[more]
A9PBN1_POPTR6.7e-2353.27Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
U5FPC1_POPTR1.9e-2252.34Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13040g PE=4 SV=1[more]
D7SQU5_VITVI9.6e-2250.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00330 PE=4 SV=... [more]
W9R4C8_9ROSA1.6e-2151.40Uncharacterized protein OS=Morus notabilis GN=L484_013989 PE=4 SV=1[more]
BLAST of CSPI04G16090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G08880.11.7e-1741.12 unknown protein[more]
AT5G01570.13.9e-1439.39 unknown protein[more]
BLAST of CSPI04G16090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461759|ref|XP_004148609.1|6.4e-51100.00PREDICTED: uncharacterized protein LOC101211451 [Cucumis sativus][more]
gi|700199241|gb|KGN54399.1|6.4e-51100.00hypothetical protein Csa_4G312810 [Cucumis sativus][more]
gi|659128468|ref|XP_008464222.1|2.7e-4996.26PREDICTED: uncharacterized protein LOC103502153 isoform X2 [Cucumis melo][more]
gi|659128466|ref|XP_008464221.1|1.0e-4896.23PREDICTED: uncharacterized protein LOC103502153 isoform X1 [Cucumis melo][more]
gi|118483783|gb|ABK93784.1|9.6e-2353.27unknown [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G16090.1CSPI04G16090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 58..98
scor
NoneNo IPR availablePANTHERPTHR35730FAMILY NOT NAMEDcoord: 1..107
score: 5.5
NoneNo IPR availableunknownSSF58100Bacterial hemolysinscoord: 6..98
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G16090Cla018081Watermelon (97103) v1cpiwmB345
CSPI04G16090Csa4G312810Cucumber (Chinese Long) v2cpicuB181
CSPI04G16090MELO3C026013Melon (DHL92) v3.5.1cpimeB330
CSPI04G16090ClCG04G006790Watermelon (Charleston Gray)cpiwcgB316
CSPI04G16090MELO3C026013.2Melon (DHL92) v3.6.1cpimedB322
CSPI04G16090CsaV3_4G026470Cucumber (Chinese Long) v3cpicucB212
CSPI04G16090Cla97C04G073420Watermelon (97103) v2cpiwmbB307
CSPI04G16090Bhi03G001713Wax gourdcpiwgoB395
CSPI04G16090Cucsa.130070Cucumber (Gy14) v1cgycpiB183
CSPI04G16090CmaCh03G003330Cucurbita maxima (Rimu)cmacpiB677
CSPI04G16090CmaCh07G010790Cucurbita maxima (Rimu)cmacpiB887
CSPI04G16090CmoCh07G011290Cucurbita moschata (Rifu)cmocpiB866
CSPI04G16090CmoCh03G003470Cucurbita moschata (Rifu)cmocpiB669
CSPI04G16090Cp4.1LG19g02620Cucurbita pepo (Zucchini)cpecpiB491
CSPI04G16090CsGy4G015390Cucumber (Gy14) v2cgybcpiB170
CSPI04G16090Carg13301Silver-seed gourdcarcpiB0616
CSPI04G16090Carg20011Silver-seed gourdcarcpiB0591
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G16090Melon (DHL92) v3.6.1cpimedB278
CSPI04G16090Melon (DHL92) v3.6.1cpimedB282
CSPI04G16090Cucumber (Gy14) v2cgybcpiB124
CSPI04G16090Cucumber (Gy14) v2cgybcpiB277
CSPI04G16090Silver-seed gourdcarcpiB0183
CSPI04G16090Silver-seed gourdcarcpiB0294
CSPI04G16090Silver-seed gourdcarcpiB0613
CSPI04G16090Silver-seed gourdcarcpiB1036
CSPI04G16090Cucumber (Chinese Long) v3cpicucB209
CSPI04G16090Cucumber (Chinese Long) v3cpicucB240
CSPI04G16090Watermelon (97103) v2cpiwmbB281
CSPI04G16090Watermelon (97103) v2cpiwmbB291
CSPI04G16090Wax gourdcpiwgoB364
CSPI04G16090Wild cucumber (PI 183967)cpicpiB106
CSPI04G16090Wild cucumber (PI 183967)cpicpiB159
CSPI04G16090Cucumber (Gy14) v1cgycpiB195
CSPI04G16090Cucumber (Gy14) v1cgycpiB279
CSPI04G16090Cucurbita maxima (Rimu)cmacpiB267
CSPI04G16090Cucurbita maxima (Rimu)cmacpiB851
CSPI04G16090Cucurbita maxima (Rimu)cmacpiB876
CSPI04G16090Cucurbita moschata (Rifu)cmocpiB253
CSPI04G16090Cucurbita moschata (Rifu)cmocpiB719
CSPI04G16090Cucurbita moschata (Rifu)cmocpiB856
CSPI04G16090Cucumber (Chinese Long) v2cpicuB177
CSPI04G16090Cucumber (Chinese Long) v2cpicuB197
CSPI04G16090Melon (DHL92) v3.5.1cpimeB282
CSPI04G16090Melon (DHL92) v3.5.1cpimeB287
CSPI04G16090Watermelon (Charleston Gray)cpiwcgB283
CSPI04G16090Watermelon (Charleston Gray)cpiwcgB294
CSPI04G16090Watermelon (97103) v1cpiwmB293
CSPI04G16090Watermelon (97103) v1cpiwmB358
CSPI04G16090Cucurbita pepo (Zucchini)cpecpiB065
CSPI04G16090Cucurbita pepo (Zucchini)cpecpiB620
CSPI04G16090Cucurbita pepo (Zucchini)cpecpiB872
CSPI04G16090Bottle gourd (USVL1VR-Ls)cpilsiB247
CSPI04G16090Bottle gourd (USVL1VR-Ls)cpilsiB277
CSPI04G16090Bottle gourd (USVL1VR-Ls)cpilsiB280