Cla017846 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla017846
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nuclear transcription factor Y subunit B-1 (AHRD V1 ***- F4ITZ4_ARATH); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Location	Chr10 : 26667099 .. 26668395 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGTACGGGAGTATTTCTATGATCAATTGTTGTTCGATTTGGTTGGAGTTATTTTTAGTTAATTTTCCCTTCTCCATGTTCCGAATTTTGGGGATTTTTCTTTTTCCAATGGTTGAATTGTTTCTAGGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGTAGTCAGTCGGCTAATTCTAATGCTTTAACTCTTGTGAAGAACTGTATAAAATAGAATTTGCAGTTGCATATTGTTCATTATCCACTTTTCACGATTCGTTTGATGTTTCTAACAGGGAGCTTTGCATCTAGTCTTATTAATTTTGTTAGACACATTTTGATATCGATTTCGTTTTTAGTTCAGTTTTTTGAAATTTATGCTTGTTTTCTCTCTTCTTTTTCTTTAGTATTGTTTTCAGCTTCTGTGAAATGTGATGGAAATATAGTAAAGAAAATGTGAGAAAACAAGCATATCTTTCAAGAATCAGAAACCAAAAACTATATGATTATCAATGGAGCTTTATTTATTTATTTTTGGTGGTTAATTTTACGACCGTTCGTTGTGCTCTTCAACTGATGGGCGGATGCTGTGGTTTTTGCATTTTTTTGCCTGCTGGTTGGGACTTGGCGTTTTAGACGGAGGTAAGATAGAGTTTTCCTTTTCTGTTTCTATGAATTGTCAACATCATGTATGAAATTAGGAGGTTTTTATTTAGTGTTTGTGTTGTCTTACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGGTCAATTATATGTGTTTGATATTCCTTTTTCTCATTGAGCTGGAATTTTGGTGTTTTCTTCTGACCTTCTCTCTTTTGAATTCTACAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAAGTACTCTCTCTCTCTCTCTCTCTCTCACAGACACTCTCGAATAATAATATGCATTAA

mRNA sequence

ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAAGTACTCTCTCTCTCTCTCTCTCTCTCACAGACACTCTCGAATAATAATATGCATTAA

Coding sequence (CDS)

ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAAGTACTCTCTCTCTCTCTCTCTCTCTCACAGACACTCTCGAATAATAATATGCATTAA

Protein sequence

MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQVLSLSLSLSQTLSNNNMH

Homology

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BLAST of Cla017846 vs. Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-59
Identity = 122/167 (73.05%), Postives = 137/167 (82.04%), Query Frame = 1


Query: 9   GGGSHESG-EQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 68
           GGGSHESG +QSPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 69  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDTKGSAKG 128
           SF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YR  EGDTKGS KG
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKG 129

Query: 129 GDASAKKEAHSTPI---SQIAHQGSLSQGVNYASSQVLSLSLSLSQT 169
           G++SAK++   + +   SQ+  QGS SQG  Y +SQ  ++ + +  T
Sbjct: 130 GESSAKRDGQPSQVSQFSQVPQQGSFSQG-PYGNSQGSNMMVQMPGT 175

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BLAST of Cla017846 vs. Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.9e-58
Identity = 122/154 (79.22%), Postives = 133/154 (86.36%), Query Frame = 1


Query: 1   MADAPA-SPGG-GSHESG-EQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHESG +QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR-- 120
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YR  
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 121 EGDTKGSAKGGDASAKKEAHST---PISQIAHQG 146
           EGDTKGSAKGGD +AKK+  S+     SQ+AHQG
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQG 154

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BLAST of Cla017846 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-57
Identity = 123/172 (71.51%), Postives = 133/172 (77.33%), Query Frame = 1


Query: 1   MADAPASPGGG--SHESGEQSPRS-----NVREQDRFLPIANISRIMKKALPANGKIAKD 60
           MA+APASPGGG  SHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKD
Sbjct: 1   MAEAPASPGGGGGSHESG--SPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKD 60

Query: 61  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKY 120
           AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PLK YL KY
Sbjct: 61  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKY 120

Query: 121 R--EGDTKGSAKGGDASAKKE------AHSTPISQIAHQGSLSQGVNYASSQ 158
           R  EGD+K +AK  D S KK+      A S+    +  QG+ +QG+ Y   Q
Sbjct: 121 REMEGDSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQ 170

[Close]

BLAST of Cla017846 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-55
Identity = 121/179 (67.60%), Postives = 129/179 (72.07%), Query Frame = 1


Query: 1   MADAPASPGGG--SHESGEQSPRSN------------VREQDRFLPIANISRIMKKALPA 60
           MAD P SPGGG  SHESG  SPR              VREQDRFLPIANISRIMKKA+PA
Sbjct: 1   MADGPGSPGGGGGSHESG--SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPA 60

Query: 61  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 120
           NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PL
Sbjct: 61  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL 120

Query: 121 KTYLTKYR--EGDTKGSAKGGDASAKKE------AHSTPISQIAHQGSLSQGVNYASSQ 158
           K YL KYR  EGD+K +AK GD S KK+        S+    +  Q + +QG+ Y   Q
Sbjct: 121 KVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQ 177

[Close]

BLAST of Cla017846 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 3.9e-50
Identity = 100/130 (76.92%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDT 120
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YR  EGD 
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDN 120

Query: 121 KGSAKGGDAS 129
           KGS K GD S
Sbjct: 121 KGSGKSGDGS 125

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BLAST of Cla017846 vs. TrEMBL
Match: S6DEZ2_CUCSA (Nuclear transcription factor Y subunit B-8-like OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.9e-80
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           SAKGGD SAKKEAH TPI Q+AHQGS SQGVNYASSQ
Sbjct: 121 SAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQ 157

[Close]

BLAST of Cla017846 vs. TrEMBL
Match: A0A0A0LAB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736780 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.2e-79
Identity = 152/159 (95.60%), Postives = 153/159 (96.23%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDT 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR  EGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           KGSAKGGD SAKKEAH TPI Q+AHQGS SQGVNYASSQ
Sbjct: 121 KGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQ 159

[Close]

BLAST of Cla017846 vs. TrEMBL
Match: A0A0L9U847_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g235000 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.7e-74
Identity = 142/170 (83.53%), Postives = 151/170 (88.82%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SPGGGSHESG+ SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YREGDTKG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKG 120

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQVLSLSLSLSQTLS 171
           SAKGGD S KK+    P +Q+ HQGS SQGV+Y +SQV  LSL L   LS
Sbjct: 121 SAKGGDTSGKKDVQPGPSAQLTHQGSFSQGVSYTNSQVTVLSLLLYYLLS 170

[Close]

BLAST of Cla017846 vs. TrEMBL
Match: K7MYY6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.3e-73
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD PASPGGGSHESGE SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 46  MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQE 105

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YREGDTKG
Sbjct: 106 CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKG 165

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           SAKGGD+S+KK+   +P +Q+AHQGS SQGV+Y  SQ
Sbjct: 166 SAKGGDSSSKKDVQPSPNAQLAHQGSFSQGVSYTISQ 202

[Close]

BLAST of Cla017846 vs. TrEMBL
Match: A0A0R0EXD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G178500 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.3e-73
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD PASPGGGSHESGE SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YREGDTKG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKG 120

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           SAKGGD+S+KK+   +P +Q+AHQGS SQGV+Y  SQ
Sbjct: 121 SAKGGDSSSKKDVQPSPNAQLAHQGSFSQGVSYTISQ 157

[Close]

BLAST of Cla017846 vs. NCBI nr
Match: gi|821595338|ref|NP_001295779.1| (nuclear transcription factor Y subunit B-1 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.8e-80
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           SAKGGD SAKKEAH TPI Q+AHQGS SQGVNYASSQ
Sbjct: 121 SAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQ 157

[Close]

BLAST of Cla017846 vs. NCBI nr
Match: gi|449440059|ref|XP_004137802.1| (PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 8.9e-79
Identity = 152/159 (95.60%), Postives = 153/159 (96.23%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDT 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR  EGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           KGSAKGGD SAKKEAH TPI Q+AHQGS SQGVNYASSQ
Sbjct: 121 KGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQ 159

[Close]

BLAST of Cla017846 vs. NCBI nr
Match: gi|920695743|gb|KOM38968.1| (hypothetical protein LR48_Vigan03g235000 [Vigna angularis])

HSP 1 Score: 286.2 bits (731), Expect = 3.9e-74
Identity = 142/170 (83.53%), Postives = 151/170 (88.82%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SPGGGSHESG+ SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YREGDTKG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKG 120

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQVLSLSLSLSQTLS 171
           SAKGGD S KK+    P +Q+ HQGS SQGV+Y +SQV  LSL L   LS
Sbjct: 121 SAKGGDTSGKKDVQPGPSAQLTHQGSFSQGVSYTNSQVTVLSLLLYYLLS 170

[Close]

BLAST of Cla017846 vs. NCBI nr
Match: gi|947046293|gb|KRG95922.1| (hypothetical protein GLYMA_19G178500 [Glycine max])

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-73
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD PASPGGGSHESGE SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKG 120
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YREGDTKG
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKG 120

Query: 121 SAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQ 158
           SAKGGD+S+KK+   +P +Q+AHQGS SQGV+Y  SQ
Sbjct: 121 SAKGGDSSSKKDVQPSPNAQLAHQGSFSQGVSYTISQ 157

[Close]

BLAST of Cla017846 vs. NCBI nr
Match: gi|568853945|ref|XP_006480597.1| (PREDICTED: nuclear transcription factor Y subunit B-10 isoform X3 [Citrus sinensis])

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-73
Identity = 142/168 (84.52%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 2   ADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61
           A+APASPGGGSHESGEQSPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQEC
Sbjct: 3   AEAPASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62

Query: 62  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDTK 121
           VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YR  EGDTK
Sbjct: 63  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK 122

Query: 122 GSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQVLSLSLSLSQ 168
           G+AKGGDASAKK+    P +Q+AHQGS  QGVNY +SQ ++ S  L+Q
Sbjct: 123 GNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQCINGSSILTQ 170

The following BLAST results are available for this feature:

BLAST of Cla017846 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYBA_ARATH	1.6e-59	73.05	Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE...	[more]
NFYB8_ARATH	3.9e-58	79.22	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2...	[more]
NFYB_MAIZE	3.3e-57	71.51	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB3_ORYSJ	1.8e-55	67.60	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB1_ARATH	3.9e-50	76.92	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of Cla017846 vs. TrEMBL


Match Name	E-value	Identity	Description
S6DEZ2_CUCSA	1.9e-80	96.82	Nuclear transcription factor Y subunit B-8-like OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0LAB9_CUCSA	6.2e-79	95.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736780 PE=4 SV=1	[more]
A0A0L9U847_PHAAN	2.7e-74	83.53	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g235000 PE=4 SV=1	[more]
K7MYY6_SOYBN	2.3e-73	87.90	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0EXD2_SOYBN	2.3e-73	87.90	Uncharacterized protein OS=Glycine max GN=GLYMA_19G178500 PE=4 SV=1	[more]

BLAST of Cla017846 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|821595338\|ref\|NP_001295779.1\|	2.8e-80	96.82	nuclear transcription factor Y subunit B-1 [Cucumis sativus]	[more]
gi\|449440059\|ref\|XP_004137802.1\|	8.9e-79	95.60	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativu...	[more]
gi\|920695743\|gb\|KOM38968.1\|	3.9e-74	83.53	hypothetical protein LR48_Vigan03g235000 [Vigna angularis]	[more]
gi\|947046293\|gb\|KRG95922.1\|	3.3e-73	87.90	hypothetical protein GLYMA_19G178500 [Glycine max]	[more]
gi\|568853945\|ref\|XP_006480597.1\|	3.3e-73	84.52	PREDICTED: nuclear transcription factor Y subunit B-10 isoform X3 [Citrus sinens...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0008150	biological_process
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0000186	activation of MAPKK activity
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004709	MAP kinase kinase kinase activity
molecular_function	GO:0004714	transmembrane receptor protein tyrosine kinase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12823	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU15675	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU29648	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU31735	watermelon EST collection version 2.0	transcribed_cluster
WMU36411	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU76251	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla017846	Cla017846.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31735	WMU31735	transcribed_cluster
WMU12823	WMU12823	transcribed_cluster
WMU29648	WMU29648	transcribed_cluster
WMU36411	WMU36411	transcribed_cluster
WMU15675	WMU15675	transcribed_cluster
WMU76251	WMU76251	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 61..77 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 30..94 score: 2.1
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 19..132 score: 2.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 27..126 score: 1.71
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 58..76 score: 3.1E-21coord: 77..95 score: 3.1E-21coord: 96..114 score: 3.1
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 9..115 score: 6.9
None	No IPR available	PANTHER	PTHR11064:SF27	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED	coord: 9..115 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla017846	Cla97C02G039490	Watermelon (97103) v2	wmwmbB064
Cla017846	Cla97C10G203800	Watermelon (97103) v2	wmwmbB051
Cla017846	Csa5G175930	Cucumber (Chinese Long) v2	cuwmB372
Cla017846	Csa3G736780	Cucumber (Chinese Long) v2	cuwmB199
Cla017846	MELO3C011726	Melon (DHL92) v3.5.1	mewmB043
Cla017846	MELO3C009309	Melon (DHL92) v3.5.1	mewmB346
Cla017846	ClCG02G013850	Watermelon (Charleston Gray)	wcgwmB177
Cla017846	ClCG10G020590	Watermelon (Charleston Gray)	wcgwmB051
Cla017846	CSPI03G32900	Wild cucumber (PI 183967)	cpiwmB199
Cla017846	CSPI05G08870	Wild cucumber (PI 183967)	cpiwmB378
Cla017846	Cucsa.165970	Cucumber (Gy14) v1	cgywmB304
Cla017846	Cucsa.307210	Cucumber (Gy14) v1	cgywmB553
Cla017846	CmaCh06G003500	Cucurbita maxima (Rimu)	cmawmB788
Cla017846	CmaCh14G001880	Cucurbita maxima (Rimu)	cmawmB228
Cla017846	CmoCh06G003460	Cucurbita moschata (Rifu)	cmowmB782
Cla017846	CmoCh14G001780	Cucurbita moschata (Rifu)	cmowmB214
Cla017846	CmoCh04G013120	Cucurbita moschata (Rifu)	cmowmB659
Cla017846	Lsi03G020570	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla017846	Cp4.1LG08g11300	Cucurbita pepo (Zucchini)	cpewmB827
Cla017846	Cp4.1LG03g02160	Cucurbita pepo (Zucchini)	cpewmB597
Cla017846	CsGy3G030670	Cucumber (Gy14) v2	cgybwmB187
Cla017846	MELO3C009309.2	Melon (DHL92) v3.6.1	medwmB344
Cla017846	MELO3C011726.2	Melon (DHL92) v3.6.1	medwmB044
Cla017846	Carg12592	Silver-seed gourd	carwmB0996
Cla017846	Carg01010	Silver-seed gourd	carwmB0146
Cla017846	CsaV3_3G035490	Cucumber (Chinese Long) v3	cucwmB208
Cla017846	CsaV3_5G006310	Cucumber (Chinese Long) v3	cucwmB395
Cla017846	Bhi11G001812	Wax gourd	wgowmB008
Cla017846	Bhi07G000871	Wax gourd	wgowmB537

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla017846	Cla020078	Watermelon (97103) v1	wmwmB053

The following block(s) are covering this gene:


Gene	Organism	Block
Cla017846	Silver-seed gourd	carwmB0250
Cla017846	Silver-seed gourd	carwmB0297
Cla017846	Silver-seed gourd	carwmB0543
Cla017846	Cucumber (Chinese Long) v3	cucwmB302
Cla017846	Cucumber (Chinese Long) v3	cucwmB396
Cla017846	Watermelon (97103) v2	wmwmbB062
Cla017846	Watermelon (97103) v2	wmwmbB066
Cla017846	Watermelon (97103) v2	wmwmbB077
Cla017846	Wax gourd	wgowmB360
Cla017846	Wax gourd	wgowmB412
Cla017846	Watermelon (97103) v1	wmwmB010
Cla017846	Watermelon (97103) v1	wmwmB050
Cla017846	Watermelon (97103) v1	wmwmB052
Cla017846	Cucumber (Gy14) v1	cgywmB061
Cla017846	Cucurbita maxima (Rimu)	cmawmB513
Cla017846	Cucurbita maxima (Rimu)	cmawmB554
Cla017846	Cucurbita maxima (Rimu)	cmawmB613
Cla017846	Cucurbita maxima (Rimu)	cmawmB812
Cla017846	Cucurbita moschata (Rifu)	cmowmB505
Cla017846	Cucurbita moschata (Rifu)	cmowmB546
Cla017846	Cucurbita moschata (Rifu)	cmowmB606
Cla017846	Cucurbita moschata (Rifu)	cmowmB804
Cla017846	Wild cucumber (PI 183967)	cpiwmB292
Cla017846	Wild cucumber (PI 183967)	cpiwmB377
Cla017846	Melon (DHL92) v3.5.1	mewmB091
Cla017846	Melon (DHL92) v3.5.1	mewmB399
Cla017846	Watermelon (Charleston Gray)	wcgwmB019
Cla017846	Watermelon (Charleston Gray)	wcgwmB175
Cla017846	Watermelon (Charleston Gray)	wcgwmB251
Cla017846	Cucumber (Chinese Long) v2	cuwmB292
Cla017846	Cucumber (Chinese Long) v2	cuwmB451
Cla017846	Cucurbita pepo (Zucchini)	cpewmB065
Cla017846	Cucurbita pepo (Zucchini)	cpewmB276
Cla017846	Cucurbita pepo (Zucchini)	cpewmB474
Cla017846	Cucurbita pepo (Zucchini)	cpewmB690
Cla017846	Bottle gourd (USVL1VR-Ls)	lsiwmB048
Cla017846	Bottle gourd (USVL1VR-Ls)	lsiwmB127
Cla017846	Bottle gourd (USVL1VR-Ls)	lsiwmB182
Cla017846	Cucumber (Gy14) v2	cgybwmB270
Cla017846	Cucumber (Gy14) v2	cgybwmB346
Cla017846	Melon (DHL92) v3.6.1	medwmB088
Cla017846	Melon (DHL92) v3.6.1	medwmB391