Carg01010 (gene) Silver-seed gourd

Overview
NameCarg01010
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNuclear transcription factor Y subunit B
LocationCucurbita_argyrosperma_scaffold_002 : 499318 .. 502833 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGGGAAAGCAAAAACGAACGGTGCTGATAAGCTTGATTCTCTCATCTCAGTCGTCTCCTTTCTCCTACCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTAAATCCCTTCCCTCTCCCGCGCCCAAATTACAAATCCCCTTCCGTTTCTTCTCCCACCAGGTAAAACCTCTTCATTTTTCAATTGTTTTTTCTCTTTCTCTTCAAACCGATGTCAAACTCTTCGTAATTTCATGGTTTTTTTCCCGTTTTTTCGCTCTAAATCATCCTCCATCTTCCATTTTTGCTTCTGGTGTCTTCTGGAGCTTCGGTTTGTGGTCATTTTCATGGGTTTTGTTGATGATGTTGTCTCGTTATTGGTTTTTTGAGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGTACGGAAGTGTTTATTGTTCTATAGTTAATTGTTGTTCGTTTCTTGTTCTGAATTTTGGGATTCTTATGGTTGAATTGTATTTAGGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGTACTCAAAATCGGCTAATGCTAATACTAATGCATCGCCGGCCATTCTTTCACTATGTGTTCTGTTATCCACTTTTCATGATTCATTTGAAACAGGGAGCTCAGCTCATCATTTAGTCTTAACTTTTGATTTATTTAGTTCTTGTTTGTTAATTTTACTGCTGTTCGTTGTGTTCTTGAACTGATGGATGGCTGTTTTCTTTGCCTGCTGGTTGGGACTTGGGGGCGTTTTAGACTGAGGTAAGATAGTGTGTTTTCCTCTACGTTTCTGTGATTTGTCAACATCATGTTTGAATGAAATTAGGAGGTTTCTATATATTGTTTGTGTTGTGTTGTCTGACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTCAATTATAAGAGTTACTTTTTTTCTCATTGAGCTGCCCTTTTTGGTGTTTTCTTCTAAGCTTTTTTCTTTCCCAATTCTGTAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAAGTACTCTCTCTCTCTCTCTCTCTCTCTCTCACATACACACGCACATACACACAAACAAGCACGTACTTCCATAATGTCCTTTGAATAAGCGAAGAAGCAGTTATGCTAGATTATTTAGATTGTGAAAAGTTTTTTTTTATCTCATTAGTCCAACTTTAACGTCAAAAAATGACTCAAATTTGAAAGAACAAGACAAAAATCATAATTACGATGAGCCTAGTGACCAGCCTAAGCACACCGCTAGCAGATATTGTTCTTTTTGGGCTTTCCTTTCTAGGTTTCTTCTCAAGGTTTTAAAACACTTATGTTAGGGGGAGGTTTCCACACCCTTATAAGAAATGCTTTGTTCCCCTCTCCAACCGATGTGAAATCTCACATTCCACCTGTGATGTCCCACATTGGTTGGCTAATCTCACATTCCACCTGTGATGTCCCACATTGGTTGGCTAGCAGACGCATTACACCACTACTCCCTCCGGTCAATTATAGGAGGATAATATCTGCTAGCGGTGGGCCTGGGTCGTTACACCACTACTCCCTCCGGGAGCTCGACGTCCTCGCTGGCACACCGCCTAGTAACCAGCTTTGATACCATGTGTAACAACCCAACCCAAACCTACCGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCTGAGCTTCTTCTCGAGGTTTTAAAATGTCTATGTTAGAGAGAAGTTTCCACACCCTTATAAGGAATGCTTTGTTCCCCTCTACAACAGATGTGGGATCTCATAGAGGAAGAAAATTCATGAGTGCTTATCCAACTAAAAGTCATTTTCCAGTTGGAAGCAACGGTTTGTAACTCATGTCTACTTTTGTGTCATGAAGCAAGGCGAATCCCATTGGTAGACTCCCCATTACTCCCCATGATTTGCAGAATTTGTTAGGGTTTGCTAGAGTTCATCCTTTCTACCCTCTCTTTCAGTAACTTCATTGTTTTAGAAAAGTAATTTTGTTTCTAGTTCATACTTCATATCTTCATGAGTCTTGGAAGTTCTTTCCTGAGTCAAAGCATCTGTCTCGTATTATCACTTGGGGTTTATTGTTAGAGCTTTCATATACAAGTCTTGGTTGAAATATATGAACAATTAGTACATAAATTTGAATGTCTCAAGGAGATGACTTACAGGAGTAAATGACTATTTCCCTTGTAGCTTTGGTGATAGAAAATGAGCATGTAACCTTTTTGAACTTCTCTAAATTGAGATACCCTTTTGAGTCTAGTGGTCAAATAAATAATTAAAGGACTAGGTGAGAATCGGTTCAAGCCATGTTGGCTACTTACCTAAGATATAGTATTCTACTAGTTACCGTGACAATCAAATATAGTAGGATCGCTGACCCAGACATTCACGGATATAGAAATAATTAGAATCCCGGGTCCTATAAAAACATTTAAGACATAAATGAGCAGGAACGAACCAGCTACAAGTACATGTTAGAAACTTTGTTTTTACCATTCACAATAGTTTCAAGTAGTTGACTTGGAAGTGTTTCTCCTCTTTAGGTTTAATACCCACCTTCGCATTTTTTGCAGTCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAACTTGCCTCGAATTCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCATAACAGCAAAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAATAGGACACAACATTTAAGAGAGGTTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAAAAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAACGAATGATTTGGTTCTAGAAGTGTTCTTAAACCCTCCTTTGCTGTAAGATGAAATGAATGGTTTTTCATTGTGTTGATCTCTGGTCGTTGTCTTGTTTGTTTGTTTGTTTTTTACTGTTATATTCCCTTTGGGGGAAAAGTAAAAGTAGTTTCCCTACCAAAAGTGTTTGCTTCATATCTACT

mRNA sequence

AGGGGGAAAGCAAAAACGAACGGTGCTGATAAGCTTGATTCTCTCATCTCAGTCGTCTCCTTTCTCCTACCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTAAATCCCTTCCCTCTCCCGCGCCCAAATTACAAATCCCCTTCCGTTTCTTCTCCCACCAGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAACTTGCCTCGAATTCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCATAACAGCAAAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAATAGGACACAACATTTAAGAGAGGTTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAAAAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAACGAATGATTTGGTTCTAGAAGTGTTCTTAAACCCTCCTTTGCTGTAAGATGAAATGAATGGTTTTTCATTGTGTTGATCTCTGGTCGTTGTCTTGTTTGTTTGTTTGTTTTTTACTGTTATATTCCCTTTGGGGGAAAAGTAAAAGTAGTTTCCCTACCAAAAGTGTTTGCTTCATATCTACT

Coding sequence (CDS)

ATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGACAGGGTGA

Protein sequence

MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG
Homology
[Close]
BLAST of Carg01010 vs. NCBI nr
Match: XP_022948121.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_022948130.1 nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_023005187.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023005188.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023540646.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo] >XP_023540647.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 1.7e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. NCBI nr
Match: XP_004137802.1 (PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus] >XP_008442637.1 PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis melo] >KGN58930.1 hypothetical protein Csa_3G736780 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. NCBI nr
Match: XP_022935570.1 (nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata] >XP_022935571.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. NCBI nr
Match: XP_022983506.1 (nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita maxima] >XP_022983507.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. NCBI nr
Match: XP_023529112.1 (nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529113.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. TAIR10
Match: AT2G37060.1 (nuclear factor Y, subunit B8)

HSP 1 Score: 188.7 bits (478), Expect = 2.0e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0 

Query: 1   MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

[Close]
BLAST of Carg01010 vs. TAIR10
Match: AT2G38880.8 (nuclear factor Y, subunit B1)

HSP 1 Score: 184.5 bits (467), Expect = 3.8e-47
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRE 110

[Close]
BLAST of Carg01010 vs. TAIR10
Match: AT3G53340.1 (nuclear factor Y, subunit B10)

HSP 1 Score: 181.4 bits (459), Expect = 3.2e-46
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 17  EHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASD 76
           + SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASD
Sbjct: 19  DQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASD 78

Query: 77  KCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           KCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE
Sbjct: 79  KCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYRE 118

[Close]
BLAST of Carg01010 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 175.6 bits (444), Expect = 1.7e-44
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD+    GG  H+ G +   ++ REQDRFLPIAN+SRIMKKALPAN KI+KDAKETVQE
Sbjct: 1   MADSDNDSGG--HKDGGN---ASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFEDY++PLK YL KYRE
Sbjct: 61  CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYRE 110

[Close]
BLAST of Carg01010 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-43
Identity = 83/116 (71.55%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQ 60
           M D+    GGG + + ++   S + REQDRFLPIAN+SRIMKKALPAN KI+KDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           ECVSEFISF+T EASDKCQ+EKRKTINGDDLLWAM TLGFEDY++PLK YL ++RE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRE 116

[Close]
BLAST of Carg01010 vs. Swiss-Prot
Match: sp|Q8VYK4|NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-47
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0 

Query: 1   MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

[Close]
BLAST of Carg01010 vs. Swiss-Prot
Match: sp|Q9SLG0|NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 6.8e-46
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRE 110

[Close]
BLAST of Carg01010 vs. Swiss-Prot
Match: sp|Q67XJ2|NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.7e-45
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 17  EHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASD 76
           + SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASD
Sbjct: 19  DQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASD 78

Query: 77  KCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           KCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE
Sbjct: 79  KCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYRE 118

[Close]
BLAST of Carg01010 vs. Swiss-Prot
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.5e-45
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0 

Query: 24  VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 83
           VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 84  TINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           TINGDDLLWAMATLGFEDYI+PLK YL KYRE
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYRE 120

[Close]
BLAST of Carg01010 vs. Swiss-Prot
Match: sp|Q60EQ4|NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 2.8e-44
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 25  REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 84
           REQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT
Sbjct: 37  REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 96

Query: 85  INGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           INGDDLLWAMATLGFEDYI+PLK YL KYRE
Sbjct: 97  INGDDLLWAMATLGFEDYIEPLKVYLQKYRE 127

[Close]
BLAST of Carg01010 vs. TrEMBL
Match: tr|A0A1S3B5N5|A0A1S3B5N5_CUCME (nuclear transcription factor Y subunit B-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486448 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.8e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. TrEMBL
Match: tr|A0A0A0LAB9|A0A0A0LAB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736780 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.8e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 117
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 116

[Close]
BLAST of Carg01010 vs. TrEMBL
Match: tr|A0A1S4DUT1|A0A1S4DUT1_CUCME (nuclear transcription factor Y subunit B isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486448 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]
BLAST of Carg01010 vs. TrEMBL
Match: tr|A0A1S3B658|A0A1S3B658_CUCME (nuclear transcription factor Y subunit B-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486448 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]
BLAST of Carg01010 vs. TrEMBL
Match: tr|S6DEZ2|S6DEZ2_CUCSA (Nuclear transcription factor Y subunit B-8-like OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 116
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

The following BLAST results are available for this feature:
BLAST of Carg01010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948121.11.7e-58100.00nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_0229481... [more]
XP_004137802.11.5e-5799.14PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativu... [more]
XP_022935570.11.5e-5799.14nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata] ... [more]
XP_022983506.11.5e-5799.14nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita maxima] >X... [more]
XP_023529112.11.5e-5799.14nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp... [more]
BLAST of Carg01010 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37060.12.0e-4884.03nuclear factor Y, subunit B8[more]
AT2G38880.83.8e-4779.13nuclear factor Y, subunit B1[more]
AT3G53340.13.2e-4689.00nuclear factor Y, subunit B10[more]
AT4G14540.11.7e-4477.39nuclear factor Y, subunit B3[more]
AT5G47640.12.5e-4371.55nuclear factor Y, subunit B2[more]
BLAST of Carg01010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VYK4|NFYB8_ARATH3.6e-4784.03Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q9SLG0|NFYB1_ARATH6.8e-4679.13Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q67XJ2|NFYBA_ARATH5.7e-4589.00Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=N... [more]
sp|P25209|NFYB_MAIZE7.5e-4595.65Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1[more]
sp|Q60EQ4|NFYB3_ORYSJ2.8e-4495.60Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of Carg01010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B5N5|A0A1S3B5N5_CUCME9.8e-5899.14nuclear transcription factor Y subunit B-1 isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LAB9|A0A0A0LAB9_CUCSA9.8e-5899.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736780 PE=4 SV=1[more]
tr|A0A1S4DUT1|A0A1S4DUT1_CUCME3.7e-5799.13nuclear transcription factor Y subunit B isoform X3 OS=Cucumis melo OX=3656 GN=L... [more]
tr|A0A1S3B658|A0A1S3B658_CUCME3.7e-5799.13nuclear transcription factor Y subunit B-1 isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|S6DEZ2|S6DEZ2_CUCSA3.7e-5799.13Nuclear transcription factor Y subunit B-8-like OS=Cucumis sativus OX=3659 PE=2 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01010-RACarg01010-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 77..95
score: 39.35
coord: 96..114
score: 40.31
coord: 58..76
score: 54.07
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR11064:SF85NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-1coord: 1..115
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..115
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 20..117
e-value: 9.9E-45
score: 153.8
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 27..115
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 30..94
e-value: 7.9E-29
score: 99.7
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 61..77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg01010Cla017846Watermelon (97103) v1carwmB0146
Carg01010Csa3G736780Cucumber (Chinese Long) v2carcuB0175
Carg01010Csa5G175930Cucumber (Chinese Long) v2carcuB0179
Carg01010MELO3C009309Melon (DHL92) v3.5.1carmeB0161
Carg01010MELO3C011726Melon (DHL92) v3.5.1carmeB0156
Carg01010ClCG02G013850Watermelon (Charleston Gray)carwcgB0153
Carg01010ClCG10G020590Watermelon (Charleston Gray)carwcgB0147
Carg01010CSPI03G32900Wild cucumber (PI 183967)carcpiB0181
Carg01010CSPI05G08870Wild cucumber (PI 183967)carcpiB0185
Carg01010Cucsa.307210Cucumber (Gy14) v1carcgyB0196
Carg01010Cucsa.165970Cucumber (Gy14) v1carcgyB0193
Carg01010CmaCh06G003500Cucurbita maxima (Rimu)carcmaB0216
Carg01010CmaCh04G002630Cucurbita maxima (Rimu)carcmaB0215
Carg01010CmoCh04G002710Cucurbita moschata (Rifu)carcmoB0226
Carg01010CmoCh06G003460Cucurbita moschata (Rifu)carcmoB0227
Carg01010CmoCh14G001780Cucurbita moschata (Rifu)carcmoB0214
Carg01010CmoCh04G013120Cucurbita moschata (Rifu)carcmoB0225
Carg01010Lsi04G008170Bottle gourd (USVL1VR-Ls)carlsiB145
Carg01010Lsi03G020570Bottle gourd (USVL1VR-Ls)carlsiB141
Carg01010Cp4.1LG03g02160Cucurbita pepo (Zucchini)carcpeB0230
Carg01010Cp4.1LG08g11300Cucurbita pepo (Zucchini)carcpeB0233
Carg01010CsGy3G030670Cucumber (Gy14) v2carcgybB0170
Carg01010MELO3C011726.2Melon (DHL92) v3.6.1carmedB0159
Carg01010MELO3C009309.2Melon (DHL92) v3.6.1carmedB0162
Carg01010CsaV3_3G035490Cucumber (Chinese Long) v3carcucB0181
Carg01010CsaV3_5G006310Cucumber (Chinese Long) v3carcucB0185
Carg01010Cla97C10G203800Watermelon (97103) v2carwmbB0159
Carg01010Cla97C02G039490Watermelon (97103) v2carwmbB0166
Carg01010Bhi11G001812Wax gourdcarwgoB0196
Carg01010Bhi07G000871Wax gourdcarwgoB0211
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg01010Wax gourdcarwgoB0206
Carg01010Wax gourdcarwgoB0210
Carg01010Silver-seed gourdcarcarB184
Carg01010Silver-seed gourdcarcarB185
Carg01010Silver-seed gourdcarcarB190
Carg01010Silver-seed gourdcarcarB194
Carg01010Silver-seed gourdcarcarB200
Carg01010Cucumber (Gy14) v2carcgybB0173
Carg01010Cucumber (Gy14) v1carcgyB0187
Carg01010Cucurbita maxima (Rimu)carcmaB0203
Carg01010Cucurbita maxima (Rimu)carcmaB0209
Carg01010Cucurbita maxima (Rimu)carcmaB0217
Carg01010Cucurbita moschata (Rifu)carcmoB0220
Carg01010Cucurbita moschata (Rifu)carcmoB0228
Carg01010Cucurbita pepo (Zucchini)carcpeB0221
Carg01010Cucurbita pepo (Zucchini)carcpeB0224
Carg01010Cucurbita pepo (Zucchini)carcpeB0227
Carg01010Wild cucumber (PI 183967)carcpiB0184
Carg01010Cucumber (Chinese Long) v3carcucB0184
Carg01010Bottle gourd (USVL1VR-Ls)carlsiB138
Carg01010Melon (DHL92) v3.5.1carmeB0164
Carg01010Melon (DHL92) v3.6.1carmedB0165
Carg01010Watermelon (Charleston Gray)carwcgB0152
Carg01010Watermelon (Charleston Gray)carwcgB0155
Carg01010Watermelon (97103) v1carwmB0151
Carg01010Watermelon (97103) v1carwmB0152
Carg01010Watermelon (97103) v2carwmbB0164
Carg01010Watermelon (97103) v2carwmbB0167