Cla017595 (gene) Watermelon (97103) v1

NameCla017595
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPollen preferential protein (AHRD V1 ***- Q43713_LILLO)
LocationChr10 : 24338964 .. 24339443 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATCCGATTATGCTTCGTCCGCCATCGTCGAACCGTCGGCAACCATTGTTAACGAGCAAATCCGTTTCCGGAAATGTCCGGTTCGCGGAGGTAGCTGGTGGTACGACGGCAGAGTGTGCCGCCGTTTGCTGTTGTTGTCCCTGTTTTGTTATTAATTTCCTTGTTCTCGCCATTTACAAGGTTCCGGCTGGACTCTGTCGCCGTGCTTTGAGAACGAAGCGGCGGCAGAGGTTGAAGAAGAAAGGAGTCCTTCCGGCGAGGCGTGCACGGTTCTCCGTTGGAGGATACGACGAGACGGATATACAGATTCTTTCGGTGGGAAAAACGGTGTACTCGTCGGAACCGAAAGGTCAGAAATCGGAGGAGACGGATAGGAAAGTGATGGAACTGGAAAAAGAGATGTGGGAGATTTTCTACAGTACAGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCGATCGCCAAATGA

mRNA sequence

ATGTCGAATCCGATTATGCTTCGTCCGCCATCGTCGAACCGTCGGCAACCATTGTTAACGAGCAAATCCGTTTCCGGAAATGTCCGGTTCGCGGAGGTAGCTGGTGGTACGACGGCAGAGTGTGCCGCCGTTTGCTGTTGTTGTCCCTGTTTTGTTATTAATTTCCTTGTTCTCGCCATTTACAAGGTTCCGGCTGGACTCTGTCGCCGTGCTTTGAGAACGAAGCGGCGGCAGAGGTTGAAGAAGAAAGGAGTCCTTCCGGCGAGGCGTGCACGGTTCTCCGTTGGAGGATACGACGAGACGGATATACAGATTCTTTCGGTGGGAAAAACGGTGTACTCGTCGGAACCGAAAGGTCAGAAATCGGAGGAGACGGATAGGAAAGTGATGGAACTGGAAAAAGAGATGTGGGAGATTTTCTACAGTACAGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCGATCGCCAAATGA

Coding sequence (CDS)

ATGTCGAATCCGATTATGCTTCGTCCGCCATCGTCGAACCGTCGGCAACCATTGTTAACGAGCAAATCCGTTTCCGGAAATGTCCGGTTCGCGGAGGTAGCTGGTGGTACGACGGCAGAGTGTGCCGCCGTTTGCTGTTGTTGTCCCTGTTTTGTTATTAATTTCCTTGTTCTCGCCATTTACAAGGTTCCGGCTGGACTCTGTCGCCGTGCTTTGAGAACGAAGCGGCGGCAGAGGTTGAAGAAGAAAGGAGTCCTTCCGGCGAGGCGTGCACGGTTCTCCGTTGGAGGATACGACGAGACGGATATACAGATTCTTTCGGTGGGAAAAACGGTGTACTCGTCGGAACCGAAAGGTCAGAAATCGGAGGAGACGGATAGGAAAGTGATGGAACTGGAAAAAGAGATGTGGGAGATTTTCTACAGTACAGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCGATCGCCAAATGA

Protein sequence

MSNPIMLRPPSSNRRQPLLTSKSVSGNVRFAEVAGGTTAECAAVCCCCPCFVINFLVLAIYKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQILSVGKTVYSSEPKGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISIAK
BLAST of Cla017595 vs. TrEMBL
Match: A0A0A0LGV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G784360 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.9e-75
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVRFAEVAGGTTAECAAVCCCCPCFVINFLVLAI 60
           MSN IM RPPSSNRRQPLLTSKS SG+VRFAEVAGGTTAECAAVCCCCPC VINFLVLAI
Sbjct: 1   MSNTIMFRPPSSNRRQPLLTSKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQILSVGKTVYSSEPKGQ 120
           YKVPAGLCRRALRTKRRQRLKKKGV PARR RFS GGYDETDIQILS GK VYSSEP+GQ
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVTPARRGRFSFGGYDETDIQILSAGKLVYSSEPRGQ 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISIAK 160
           ++ ET+RKVMELEKEMWEIFYSTGFWRSPS+RDQ SI++
Sbjct: 121 QAVETERKVMELEKEMWEIFYSTGFWRSPSRRDQTSISQ 159

BLAST of Cla017595 vs. TrEMBL
Match: A0A067FTL7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040225mg PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-39
Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVR--------------FAEVAGGTTAECAAVCC 60
           MS  I+LR P+ N+RQPLL S S S +                FAEVAGGTTAECAAVCC
Sbjct: 1   MSRQIVLRSPTVNKRQPLLLSSSGSSSSNGSKSTRSGGGSGSSFAEVAGGTTAECAAVCC 60

Query: 61  CCPCFVINFLVLAIYKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQIL 120
           CCPC ++N LV+AIYK+PAGLCR+A + KR+Q+L KKG+LP R+      G D+ ++QI 
Sbjct: 61  CCPCGLVNLLVMAIYKLPAGLCRKAWKEKRKQQLIKKGLLPKRKRSKCKCGCDDLEMQIH 120

Query: 121 SVGKTVYSSEPKGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQ 155
            V         +   S+E++R+V+ELEKEMWE FYS GFWR+ SQR +
Sbjct: 121 PVVDLQNCLTDRAMNSDESERRVVELEKEMWERFYSAGFWRTASQRQR 168

BLAST of Cla017595 vs. TrEMBL
Match: V4SRC8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012921mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.8e-39
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVR----------------FAEVAGGTTAECAAV 60
           MS  I+LR P+ N+RQPLL S S S                    FAEVAGGTTAECAAV
Sbjct: 1   MSRQIVLRSPTVNKRQPLLLSSSGSSTSSSNGSKSTRSGGGSGSSFAEVAGGTTAECAAV 60

Query: 61  CCCCPCFVINFLVLAIYKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQ 120
           CCCCPC ++N LV+AIYK+PAGLCR+A + KR+Q+L KKG+LP R+      G D+ ++Q
Sbjct: 61  CCCCPCGLVNLLVMAIYKLPAGLCRKAWKEKRKQQLIKKGLLPKRKRSKCKCGCDDLEMQ 120

Query: 121 ILSVGKTVYSSEPKGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQ 155
           I  V         +   S+E++R+V+ELEKEMWE FYS GFWR+ SQR +
Sbjct: 121 IHPVVDLQNCLTDRAMNSDESERRVVELEKEMWERFYSAGFWRTASQRQR 170

BLAST of Cla017595 vs. TrEMBL
Match: A0A059A499_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01912 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.8e-39
Identity = 92/175 (52.57%), Postives = 113/175 (64.57%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLL-TSKSVS--------------GNVRFAEVAGGTTAECAAVC 60
           M   I+LRPPS +RR+PLL  SKS S              G+VRFAEVAGGT AECA VC
Sbjct: 1   MPRQIVLRPPSVSRREPLLRASKSTSSSASASSGSSAGGRGSVRFAEVAGGTAAECAVVC 60

Query: 61  CCCPCFVINFLVLAIYKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQI 120
           CCCPC ++N ++LA+YKVPAGLCRRA R  RR+RL KKG+L  +  R +  G +E ++QI
Sbjct: 61  CCCPCGIVNLILLAVYKVPAGLCRRAWRKTRRKRLIKKGLLSPKGRRLTC-GCEEKELQI 120

Query: 121 LSVGKTVYSSEPK----GQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQIS 157
                   + E K         E D++V +LEKEMWE FYSTGFWRSPSQR+  S
Sbjct: 121 HPFAANEAAPEMKTPAAAAADAEVDKQVAKLEKEMWERFYSTGFWRSPSQREPAS 174

BLAST of Cla017595 vs. TrEMBL
Match: M5VS62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012433mg PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 83/156 (53.21%), Postives = 103/156 (66.03%), Query Frame = 1

Query: 2   SNPIMLRPPSSNRRQPLLTSKSVSGNVRFAEVAGGTTAECAAVCCCCPCFVINFLVLAIY 61
           S  + LR  S NRRQPLL ++     VR AEVAGGT AECAAVCCCCPC ++N LVL IY
Sbjct: 8   SRQLFLRQVSCNRRQPLLRTQVSHSTVRLAEVAGGTAAECAAVCCCCPCGLVNLLVLVIY 67

Query: 62  KVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQILSV----GKTVYSSEP 121
           KVPAG+CRR L+ KRR+R  K+G+L  R    +  G+D +++Q   V    G  +     
Sbjct: 68  KVPAGICRRVLKKKRRKRHVKQGLLQPRHCNCTC-GFDGSELQFHQVGFDCGLEINDMSH 127

Query: 122 KGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRD 154
           K    E  D  V++LEKEMW+ FYSTGFWRSPSQR+
Sbjct: 128 KVADDESVDEDVLKLEKEMWDRFYSTGFWRSPSQRE 162

BLAST of Cla017595 vs. NCBI nr
Match: gi|778684568|ref|XP_011652052.1| (PREDICTED: uncharacterized protein LOC105434984 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 4.2e-75
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVRFAEVAGGTTAECAAVCCCCPCFVINFLVLAI 60
           MSN IM RPPSSNRRQPLLTSKS SG+VRFAEVAGGTTAECAAVCCCCPC VINFLVLAI
Sbjct: 1   MSNTIMFRPPSSNRRQPLLTSKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQILSVGKTVYSSEPKGQ 120
           YKVPAGLCRRALRTKRRQRLKKKGV PARR RFS GGYDETDIQILS GK VYSSEP+GQ
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVTPARRGRFSFGGYDETDIQILSAGKLVYSSEPRGQ 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQISIAK 160
           ++ ET+RKVMELEKEMWEIFYSTGFWRSPS+RDQ SI++
Sbjct: 121 QAVETERKVMELEKEMWEIFYSTGFWRSPSRRDQTSISQ 159

BLAST of Cla017595 vs. NCBI nr
Match: gi|225439354|ref|XP_002270752.1| (PREDICTED: uncharacterized protein LOC100259819 [Vitis vinifera])

HSP 1 Score: 186.8 bits (473), Expect = 2.9e-44
Identity = 93/153 (60.78%), Postives = 119/153 (77.78%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVRFAEVAGGTTAECAAVCCCCPCFVINFLVLAI 60
           M+  I++RPPS NRRQPLL S+S SG++RFAEVAG TTAECAAV CCCPC ++N LVLA+
Sbjct: 1   MTRQIVMRPPSLNRRQPLLASQSSSGSIRFAEVAGETTAECAAVACCCPCGLVNLLVLAV 60

Query: 61  YKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQILSVGKTVYSSEPKGQ 120
           YKVPAGLCRRAL+ KR +R+ KKG+L  RR R    G D+T++QI  +   V  ++    
Sbjct: 61  YKVPAGLCRRALKKKRLRRMIKKGLLQPRRRRCPC-GCDDTELQIHPISGDVTDAD-ISV 120

Query: 121 KSEETDRKVMELEKEMWEIFYSTGFWRSPSQRD 154
           KS E++++VM+LEKEMW+ FYSTGFWRS SQR+
Sbjct: 121 KSNESEQEVMDLEKEMWDKFYSTGFWRSSSQRE 151

BLAST of Cla017595 vs. NCBI nr
Match: gi|1009179871|ref|XP_015871319.1| (PREDICTED: uncharacterized protein LOC107408439 [Ziziphus jujuba])

HSP 1 Score: 181.8 bits (460), Expect = 9.4e-43
Identity = 97/156 (62.18%), Postives = 114/156 (73.08%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLT--SKSVSGNVRFAEVAGGTTAECAAVCCCCPCFVINFLVL 60
           MS PI+LR  SSNRRQPLL   S+  S N RFAEVAGGTTA CAA+CCCCPC ++N LVL
Sbjct: 1   MSKPIILRSQSSNRRQPLLNNNSRGSSRNSRFAEVAGGTTASCAALCCCCPCGLVNLLVL 60

Query: 61  AIYKVPAGLCRRALRTKRR-QRLKKKGVLPARRARFSVGGYDETDIQILSVGKTVYSSEP 120
           AIYK+PAGLCRRAL+ KR    +K  GVLP R  R S   YDE ++QI  +   V  +  
Sbjct: 61  AIYKLPAGLCRRALKKKRHDSMIKNGGVLPPRCRRCSY-SYDEAELQIHPLSMDVLKN-V 120

Query: 121 KGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRD 154
           K  + EE +++VMELEKEMWE FYSTGFWRSPSQR+
Sbjct: 121 KSPEWEEAEKQVMELEKEMWERFYSTGFWRSPSQRE 154

BLAST of Cla017595 vs. NCBI nr
Match: gi|568856125|ref|XP_006481639.1| (PREDICTED: uncharacterized protein LOC102612483 [Citrus sinensis])

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-39
Identity = 88/168 (52.38%), Postives = 112/168 (66.67%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVR--------------FAEVAGGTTAECAAVCC 60
           MS  I+LR P+ N+RQPLL S S S +                FAEVAGGTTAECAAVCC
Sbjct: 1   MSRQIVLRSPTVNKRQPLLLSSSGSSSSNGSKSTRSGGGSGSSFAEVAGGTTAECAAVCC 60

Query: 61  CCPCFVINFLVLAIYKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQIL 120
           CCPC ++N LV+AIYK+PAGLCR+A + KR+Q+L KKG+LP R+      G DE ++QI 
Sbjct: 61  CCPCGLVNLLVMAIYKLPAGLCRKAWKEKRKQQLIKKGLLPKRKRSKCKYGCDELEMQIH 120

Query: 121 SVGKTVYSSEPKGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQ 155
            V         +   S+E++R+V+ELEKEMWE FYS GFWR+ SQR +
Sbjct: 121 PVVDLQNCLTDRAMNSDESERRVVELEKEMWERFYSAGFWRTASQRQR 168

BLAST of Cla017595 vs. NCBI nr
Match: gi|641851824|gb|KDO70694.1| (hypothetical protein CISIN_1g040225mg [Citrus sinensis])

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-39
Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 1

Query: 1   MSNPIMLRPPSSNRRQPLLTSKSVSGNVR--------------FAEVAGGTTAECAAVCC 60
           MS  I+LR P+ N+RQPLL S S S +                FAEVAGGTTAECAAVCC
Sbjct: 1   MSRQIVLRSPTVNKRQPLLLSSSGSSSSNGSKSTRSGGGSGSSFAEVAGGTTAECAAVCC 60

Query: 61  CCPCFVINFLVLAIYKVPAGLCRRALRTKRRQRLKKKGVLPARRARFSVGGYDETDIQIL 120
           CCPC ++N LV+AIYK+PAGLCR+A + KR+Q+L KKG+LP R+      G D+ ++QI 
Sbjct: 61  CCPCGLVNLLVMAIYKLPAGLCRKAWKEKRKQQLIKKGLLPKRKRSKCKCGCDDLEMQIH 120

Query: 121 SVGKTVYSSEPKGQKSEETDRKVMELEKEMWEIFYSTGFWRSPSQRDQ 155
            V         +   S+E++R+V+ELEKEMWE FYS GFWR+ SQR +
Sbjct: 121 PVVDLQNCLTDRAMNSDESERRVVELEKEMWERFYSAGFWRTASQRQR 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LGV0_CUCSA2.9e-7588.05Uncharacterized protein OS=Cucumis sativus GN=Csa_3G784360 PE=4 SV=1[more]
A0A067FTL7_CITSI3.4e-3951.79Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040225mg PE=4 SV=1[more]
V4SRC8_9ROSI9.8e-3951.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012921mg PE=4 SV=1[more]
A0A059A499_EUCGR9.8e-3952.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01912 PE=4 SV=1[more]
M5VS62_PRUPE1.8e-3753.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012433mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778684568|ref|XP_011652052.1|4.2e-7588.05PREDICTED: uncharacterized protein LOC105434984 [Cucumis sativus][more]
gi|225439354|ref|XP_002270752.1|2.9e-4460.78PREDICTED: uncharacterized protein LOC100259819 [Vitis vinifera][more]
gi|1009179871|ref|XP_015871319.1|9.4e-4362.18PREDICTED: uncharacterized protein LOC107408439 [Ziziphus jujuba][more]
gi|568856125|ref|XP_006481639.1|2.2e-3952.38PREDICTED: uncharacterized protein LOC102612483 [Citrus sinensis][more]
gi|641851824|gb|KDO70694.1|4.8e-3951.79hypothetical protein CISIN_1g040225mg [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU31064watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU51208watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla017595Cla017595.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU31064WMU31064transcribed_cluster
WMU51208WMU51208transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264FAMILY NOT NAMEDcoord: 29..154
score: 2.7
NoneNo IPR availablePANTHERPTHR33264:SF5EXPRESSED PROTEIN-RELATEDcoord: 29..154
score: 2.7