Cla016418 (gene) Watermelon (97103) v1

Overview
NameCla016418
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 21119543 .. 21119800 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACCTCTTCAAAGCCTCGAAATCGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTATTTCTTCTTCTTCGGCCAGATTGTTGCGTGACCAATCTCTTTCTGCCGCCGTGCCGGAGTTGAAACTTGATAATCCGGCGGATCCGGCGGCGGCTCTGTCGAGGGAATATGGGCCGCTGCTTCTTGGGTTTCTGCCAAAAGGGGGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

mRNA sequence

ATGGCAAACCTCTTCAAAGCCTCGAAATCGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTATTTCTTCTTCTTCGGCCAGATTGTTGCGTGACCAATCTCTTTCTGCCGCCGTGCCGGAGTTGAAACTTGATAATCCGGCGGATCCGGCGGCGGCTCTGTCGAGGGAATATGGGCCGCTGCTTCTTGGGTTTCTGCCAAAAGGGGGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAGCCTCGAAATCGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTATTTCTTCTTCTTCGGCCAGATTGTTGCGTGACCAATCTCTTTCTGCCGCCGTGCCGGAGTTGAAACTTGATAATCCGGCGGATCCGGCGGCGGCTCTGTCGAGGGAATATGGGCCGCTGCTTCTTGGGTTTCTGCCAAAAGGGGGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Protein sequence

MANLFKASKSFFVFALILFISISSSSARLLRDQSLSAAVPELKLDNPADPAAALSREYGPLLLGFLPKGGIPPSGPSKGTNDFNT
Homology
[Close]
BLAST of Cla016418 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 64/87 (73.56%), Postives = 67/87 (77.01%), Query Frame = 1 

Query: 1  MANLFKASKSFF-VFALILFISISSSSARLLRDQSLSAAVPELKLDNPADPAAALSREYG 60
          MANLFK    FF +F LIL IS+SSSSARLLR QSLS   P LKLD PADPAA    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPKGG-IPPSGPSKGTNDFNT 86
           LLLGFLPKGG IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Cla016418 vs. TrEMBL
Match: I1KB91_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G144000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1 

Query: 16  LILFISISSSSARLLRDQ----SLSAAVPELKLDNPAD---------------------- 75
           L++F+ ++SSSAR L D+    SL+A  P L L  P+D                      
Sbjct: 11  LLVFLFLTSSSARPLNDENNYFSLAATEPSLNLALPSDRVVVPEEPAPRHVSGCGHTRVA 70

Query: 76  -----PAAALSR-EYGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                P   L+  +YGP++L  LPKG +PPSGPSKGTN+ N
Sbjct: 71  GMLALPGTRLAGGKYGPMILNMLPKGPVPPSGPSKGTNNLN 111

[Close]
BLAST of Cla016418 vs. TrEMBL
Match: A0A0B2R0P4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038315 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1 

Query: 16  LILFISISSSSARLLRDQ----SLSAAVPELKLDNPAD---------------------- 75
           L++F+ ++SSSAR L D+    SL+A  P L L  P+D                      
Sbjct: 11  LLVFLFLTSSSARPLNDENNYFSLAATEPSLNLALPSDRVVVPEEPAPRHVSGCGHTRVA 70

Query: 76  -----PAAALSR-EYGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                P   L+  +YGP++L  LPKG +PPSGPSKGTN+ N
Sbjct: 71  GMLALPGTRLAGGKYGPMILNMLPKGPVPPSGPSKGTNNLN 111

[Close]
BLAST of Cla016418 vs. TrEMBL
Match: A0A151RAC1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039268 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-06
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1 

Query: 16  LILFISISSSSARLLRDQS-----LSAAVPELKLDNPADPAAALSRE------------- 75
           L+LF+ ++++S+ L R  +     L+A  P L L  P+D   A   E             
Sbjct: 14  LLLFLLLTTTSSSLARPFNTNYLGLAATEPTLNLALPSDRVVAPPEEDHPPPHVSPCGHL 73

Query: 76  -----------YGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                      YGPL+L  LPKG +PPSGPSKGTNDFN
Sbjct: 74  RVAGKKLGGAKYGPLVLNMLPKGPVPPSGPSKGTNDFN 111

[Close]
BLAST of Cla016418 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 64/87 (73.56%), Postives = 67/87 (77.01%), Query Frame = 1 

Query: 1  MANLFKASKSFF-VFALILFISISSSSARLLRDQSLSAAVPELKLDNPADPAAALSREYG 60
          MANLFK    FF +F LIL IS+SSSSARLLR QSLS   P LKLD PADPAA    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPKGG-IPPSGPSKGTNDFNT 86
           LLLGFLPKGG IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Cla016418 vs. NCBI nr
Match: gi|734388616|gb|KHN25819.1| (hypothetical protein glysoja_038315 [Glycine soja])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1 

Query: 16  LILFISISSSSARLLRDQ----SLSAAVPELKLDNPAD---------------------- 75
           L++F+ ++SSSAR L D+    SL+A  P L L  P+D                      
Sbjct: 11  LLVFLFLTSSSARPLNDENNYFSLAATEPSLNLALPSDRVVVPEEPAPRHVSGCGHTRVA 70

Query: 76  -----PAAALSR-EYGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                P   L+  +YGP++L  LPKG +PPSGPSKGTN+ N
Sbjct: 71  GMLALPGTRLAGGKYGPMILNMLPKGPVPPSGPSKGTNNLN 111

[Close]
BLAST of Cla016418 vs. NCBI nr
Match: gi|1012327742|gb|KYP39433.1| (hypothetical protein KK1_039268 [Cajanus cajan])

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-06
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1 

Query: 16  LILFISISSSSARLLRDQS-----LSAAVPELKLDNPADPAAALSRE------------- 75
           L+LF+ ++++S+ L R  +     L+A  P L L  P+D   A   E             
Sbjct: 14  LLLFLLLTTTSSSLARPFNTNYLGLAATEPTLNLALPSDRVVAPPEEDHPPPHVSPCGHL 73

Query: 76  -----------YGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                      YGPL+L  LPKG +PPSGPSKGTNDFN
Sbjct: 74  RVAGKKLGGAKYGPLVLNMLPKGPVPPSGPSKGTNDFN 111

The following BLAST results are available for this feature:
BLAST of Cla016418 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA1.7e-2173.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
I1KB91_SOYBN3.4e-0637.62Uncharacterized protein OS=Glycine max GN=GLYMA_06G144000 PE=4 SV=1[more]
A0A0B2R0P4_GLYSO3.4e-0637.62Uncharacterized protein OS=Glycine soja GN=glysoja_038315 PE=4 SV=1[more]
A0A151RAC1_CAJCA5.8e-0637.76Uncharacterized protein OS=Cajanus cajan GN=KK1_039268 PE=4 SV=1[more]
BLAST of Cla016418 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|2.4e-2173.56hypothetical protein Csa_6G014510 [Cucumis sativus][more]
gi|734388616|gb|KHN25819.1|4.9e-0637.62hypothetical protein glysoja_038315 [Glycine soja][more]
gi|1012327742|gb|KYP39433.1|8.4e-0637.76hypothetical protein KK1_039268 [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU42657watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016418Cla016418.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42657WMU42657transcribed_cluster