ClCG11G005720 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G005720
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr11 : 6223828 .. 6224085 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACCTCTTCAAAGCCTCGAAATCGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTATTTCTTCTTCTTCGGCCAGATTGTTGCGTGACCAATCTCTTTCTGCCGCCGTGCCGGAGTTGAAACTTGATAATCCGGCGGATCCGGCGGCGGCTCTGTCGAGGGAATATGGGCCGCTGCTTCTTGGGTTTCTGCCAAAAGGGGGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

mRNA sequence

ATGGCAAACCTCTTCAAAGCCTCGAAATCGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTATTTCTTCTTCTTCGGCCAGATTGTTGCGTGACCAATCTCTTTCTGCCGCCGTGCCGGAGTTGAAACTTGATAATCCGGCGGATCCGGCGGCGGCTCTGTCGAGGGAATATGGGCCGCTGCTTCTTGGGTTTCTGCCAAAAGGGGGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAGCCTCGAAATCGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTATTTCTTCTTCTTCGGCCAGATTGTTGCGTGACCAATCTCTTTCTGCCGCCGTGCCGGAGTTGAAACTTGATAATCCGGCGGATCCGGCGGCGGCTCTGTCGAGGGAATATGGGCCGCTGCTTCTTGGGTTTCTGCCAAAAGGGGGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Protein sequence

MANLFKASKSFFVFALILFISISSSSARLLRDQSLSAAVPELKLDNPADPAAALSREYGPLLLGFLPKGGIPPSGPSKGTNDFNT

Homology

[Close]

BLAST of ClCG11G005720 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 64/87 (73.56%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 1  MANLFKASKSFF-VFALILFISISSSSARLLRDQSLSAAVPELKLDNPADPAAALSREYG 60
          MANLFK    FF +F LIL IS+SSSSARLLR QSLS   P LKLD PADPAA    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPKGG-IPPSGPSKGTNDFNT 86
           LLLGFLPKGG IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]

BLAST of ClCG11G005720 vs. TrEMBL
Match: I1KB91_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G144000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 16  LILFISISSSSARLLRDQ----SLSAAVPELKLDNPAD---------------------- 75
           L++F+ ++SSSAR L D+    SL+A  P L L  P+D                      
Sbjct: 11  LLVFLFLTSSSARPLNDENNYFSLAATEPSLNLALPSDRVVVPEEPAPRHVSGCGHTRVA 70

Query: 76  -----PAAALSR-EYGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                P   L+  +YGP++L  LPKG +PPSGPSKGTN+ N
Sbjct: 71  GMLALPGTRLAGGKYGPMILNMLPKGPVPPSGPSKGTNNLN 111

[Close]

BLAST of ClCG11G005720 vs. TrEMBL
Match: A0A0B2R0P4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038315 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 16  LILFISISSSSARLLRDQ----SLSAAVPELKLDNPAD---------------------- 75
           L++F+ ++SSSAR L D+    SL+A  P L L  P+D                      
Sbjct: 11  LLVFLFLTSSSARPLNDENNYFSLAATEPSLNLALPSDRVVVPEEPAPRHVSGCGHTRVA 70

Query: 76  -----PAAALSR-EYGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                P   L+  +YGP++L  LPKG +PPSGPSKGTN+ N
Sbjct: 71  GMLALPGTRLAGGKYGPMILNMLPKGPVPPSGPSKGTNNLN 111

[Close]

BLAST of ClCG11G005720 vs. TrEMBL
Match: A0A151RAC1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039268 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-06
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 16  LILFISISSSSARLLRDQS-----LSAAVPELKLDNPADPAAALSRE------------- 75
           L+LF+ ++++S+ L R  +     L+A  P L L  P+D   A   E             
Sbjct: 14  LLLFLLLTTTSSSLARPFNTNYLGLAATEPTLNLALPSDRVVAPPEEDHPPPHVSPCGHL 73

Query: 76  -----------YGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                      YGPL+L  LPKG +PPSGPSKGTNDFN
Sbjct: 74  RVAGKKLGGAKYGPLVLNMLPKGPVPPSGPSKGTNDFN 111

[Close]

BLAST of ClCG11G005720 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 64/87 (73.56%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 1  MANLFKASKSFF-VFALILFISISSSSARLLRDQSLSAAVPELKLDNPADPAAALSREYG 60
          MANLFK    FF +F LIL IS+SSSSARLLR QSLS   P LKLD PADPAA    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPKGG-IPPSGPSKGTNDFNT 86
           LLLGFLPKGG IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]

BLAST of ClCG11G005720 vs. NCBI nr
Match: gi|734388616|gb|KHN25819.1| (hypothetical protein glysoja_038315 [Glycine soja])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 16  LILFISISSSSARLLRDQ----SLSAAVPELKLDNPAD---------------------- 75
           L++F+ ++SSSAR L D+    SL+A  P L L  P+D                      
Sbjct: 11  LLVFLFLTSSSARPLNDENNYFSLAATEPSLNLALPSDRVVVPEEPAPRHVSGCGHTRVA 70

Query: 76  -----PAAALSR-EYGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                P   L+  +YGP++L  LPKG +PPSGPSKGTN+ N
Sbjct: 71  GMLALPGTRLAGGKYGPMILNMLPKGPVPPSGPSKGTNNLN 111

[Close]

BLAST of ClCG11G005720 vs. NCBI nr
Match: gi|1012327742|gb|KYP39433.1| (hypothetical protein KK1_039268 [Cajanus cajan])

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-06
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 16  LILFISISSSSARLLRDQS-----LSAAVPELKLDNPADPAAALSRE------------- 75
           L+LF+ ++++S+ L R  +     L+A  P L L  P+D   A   E             
Sbjct: 14  LLLFLLLTTTSSSLARPFNTNYLGLAATEPTLNLALPSDRVVAPPEEDHPPPHVSPCGHL 73

Query: 76  -----------YGPLLLGFLPKGGIPPSGPSKGTNDFN 85
                      YGPL+L  LPKG +PPSGPSKGTNDFN
Sbjct: 74  RVAGKKLGGAKYGPLVLNMLPKGPVPPSGPSKGTNDFN 111

The following BLAST results are available for this feature:

BLAST of ClCG11G005720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7U2_CUCSA	1.7e-21	73.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1	[more]
I1KB91_SOYBN	3.4e-06	37.62	Uncharacterized protein OS=Glycine max GN=GLYMA_06G144000 PE=4 SV=1	[more]
A0A0B2R0P4_GLYSO	3.4e-06	37.62	Uncharacterized protein OS=Glycine soja GN=glysoja_038315 PE=4 SV=1	[more]
A0A151RAC1_CAJCA	5.8e-06	37.76	Uncharacterized protein OS=Cajanus cajan GN=KK1_039268 PE=4 SV=1	[more]

BLAST of ClCG11G005720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190626\|gb\|KGN45830.1\|	2.4e-21	73.56	hypothetical protein Csa_6G014510 [Cucumis sativus]	[more]
gi\|734388616\|gb\|KHN25819.1\|	4.9e-06	37.62	hypothetical protein glysoja_038315 [Glycine soja]	[more]
gi\|1012327742\|gb\|KYP39433.1\|	8.4e-06	37.76	hypothetical protein KK1_039268 [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G005720.1	ClCG11G005720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G005720	Cla016418	Watermelon (97103) v1	wcgwmB107
ClCG11G005720	Cla97C11G212650	Watermelon (97103) v2	wcgwmbB065
ClCG11G005720	Bhi04G001842	Wax gourd	wcgwgoB158
ClCG11G005720	CsaV3_6G002250	Cucumber (Chinese Long) v3	cucwcgB452

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G005720	Cucumber (Gy14) v2	cgybwcgB262
ClCG11G005720	Cucumber (Gy14) v2	cgybwcgB397
ClCG11G005720	Melon (DHL92) v3.6.1	medwcgB259
ClCG11G005720	Melon (DHL92) v3.6.1	medwcgB506
ClCG11G005720	Silver-seed gourd	carwcgB0019
ClCG11G005720	Silver-seed gourd	carwcgB0255
ClCG11G005720	Silver-seed gourd	carwcgB0607
ClCG11G005720	Silver-seed gourd	carwcgB0644
ClCG11G005720	Cucumber (Chinese Long) v3	cucwcgB293
ClCG11G005720	Cucumber (Chinese Long) v3	cucwcgB384
ClCG11G005720	Watermelon (97103) v2	wcgwmbB063
ClCG11G005720	Watermelon (97103) v2	wcgwmbB072
ClCG11G005720	Watermelon (97103) v2	wcgwmbB080
ClCG11G005720	Wax gourd	wcgwgoB138
ClCG11G005720	Wax gourd	wcgwgoB169
ClCG11G005720	Watermelon (Charleston Gray)	wcgwcgB040
ClCG11G005720	Watermelon (Charleston Gray)	wcgwcgB067
ClCG11G005720	Watermelon (Charleston Gray)	wcgwcgB076
ClCG11G005720	Cucumber (Gy14) v1	cgywcgB213
ClCG11G005720	Cucumber (Gy14) v1	cgywcgB243
ClCG11G005720	Cucumber (Gy14) v1	cgywcgB562
ClCG11G005720	Cucurbita maxima (Rimu)	cmawcgB252
ClCG11G005720	Cucurbita maxima (Rimu)	cmawcgB575
ClCG11G005720	Cucurbita maxima (Rimu)	cmawcgB619
ClCG11G005720	Cucurbita maxima (Rimu)	cmawcgB624
ClCG11G005720	Cucurbita maxima (Rimu)	cmawcgB625
ClCG11G005720	Cucurbita moschata (Rifu)	cmowcgB240
ClCG11G005720	Cucurbita moschata (Rifu)	cmowcgB572
ClCG11G005720	Cucurbita moschata (Rifu)	cmowcgB621
ClCG11G005720	Cucurbita moschata (Rifu)	cmowcgB625
ClCG11G005720	Wild cucumber (PI 183967)	cpiwcgB294
ClCG11G005720	Wild cucumber (PI 183967)	cpiwcgB450
ClCG11G005720	Cucumber (Chinese Long) v2	cuwcgB361
ClCG11G005720	Cucumber (Chinese Long) v2	cuwcgB429
ClCG11G005720	Melon (DHL92) v3.5.1	mewcgB268
ClCG11G005720	Melon (DHL92) v3.5.1	mewcgB511
ClCG11G005720	Watermelon (97103) v1	wcgwmB094
ClCG11G005720	Watermelon (97103) v1	wcgwmB100
ClCG11G005720	Cucurbita pepo (Zucchini)	cpewcgB060
ClCG11G005720	Cucurbita pepo (Zucchini)	cpewcgB159
ClCG11G005720	Cucurbita pepo (Zucchini)	cpewcgB355
ClCG11G005720	Bottle gourd (USVL1VR-Ls)	lsiwcgB124
ClCG11G005720	Bottle gourd (USVL1VR-Ls)	lsiwcgB226
ClCG11G005720	Bottle gourd (USVL1VR-Ls)	lsiwcgB263