Cla016135 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016135
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Plant invertase/pectin methylesterase inhibitor domain-containing protein (AHRD V1 ***- Q9FJR7_ARATH); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor
Location	Chr9 : 13348539 .. 13348868 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAATGCCACAGAGATTGGGTCAGAGATTTCAGATCTTTTGAAAGGAAGTAGTGAGAAATGGGGGAAATATTCATTGAATTGTTTGAAGAGCTGTTTGGAGATTTATTCTGAGGCTGTTTCTGATTTGGAAAAAGCTTTGGGGGCTTTGAAAATGGAGGATTATGGGACAGCAAATACAGGGCTAAGTGCAGCCATGGATGCACCGATGAGTTGTGAAGATGGGTATAAGGAGAAAGATGGAGAAGTTTCTCCTTTGACAGAGATCAATGATGGGTTCTTTCAGTTGATTGCAATTTCTCTTGCTTTTATCAATATGTGTAAGTAA

mRNA sequence

ATGGGCAATGCCACAGAGATTGGGTCAGAGATTTCAGATCTTTTGAAAGGAAGTAGTGAGAAATGGGGGAAATATTCATTGAATTGTTTGAAGAGCTGTTTGGAGATTTATTCTGAGGCTGTTTCTGATTTGGAAAAAGCTTTGGGGGCTTTGAAAATGGAGGATTATGGGACAGCAAATACAGGGCTAAGTGCAGCCATGGATGCACCGATGAGTTGTGAAGATGGGTATAAGGAGAAAGATGGAGAAGTTTCTCCTTTGACAGAGATCAATGATGGGTTCTTTCAGTTGATTGCAATTTCTCTTGCTTTTATCAATATGTGTAAGTAA

Coding sequence (CDS)

ATGGGCAATGCCACAGAGATTGGGTCAGAGATTTCAGATCTTTTGAAAGGAAGTAGTGAGAAATGGGGGAAATATTCATTGAATTGTTTGAAGAGCTGTTTGGAGATTTATTCTGAGGCTGTTTCTGATTTGGAAAAAGCTTTGGGGGCTTTGAAAATGGAGGATTATGGGACAGCAAATACAGGGCTAAGTGCAGCCATGGATGCACCGATGAGTTGTGAAGATGGGTATAAGGAGAAAGATGGAGAAGTTTCTCCTTTGACAGAGATCAATGATGGGTTCTTTCAGTTGATTGCAATTTCTCTTGCTTTTATCAATATGTGTAAGTAA

Protein sequence

MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTANTGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINMCK

Homology

[Close]

BLAST of Cla016135 vs. Swiss-Prot
Match: PLA1_PLAAC (Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 3   NATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTANTG 62
           + ++I + I  +LK   +   K  LN    C+ +Y++A S +++A+   K +DY +AN  
Sbjct: 75  HGSKIQTFIGRILKSKVDPALKKYLN---DCVGLYADAKSSVQEAIADFKSKDYASANVK 134

Query: 63  LSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
           +SAA+D  ++CEDG+KEK G VSP+T+ N  + QL AISLA   +
Sbjct: 135 MSAALDDSVTCEDGFKEKKGIVSPVTKENKDYVQLTAISLAITKL 176

[Close]

BLAST of Cla016135 vs. TrEMBL
Match: A0A0A0LHE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910710 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-45
Identity = 92/106 (86.79%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 3   NATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTANTG 62
           NATEIGSEIS+L+K  SEKWG+YSLNCLKSCLE+YSEAVSDLEKAL  LKMEDY TA TG
Sbjct: 76  NATEIGSEISELMKRRSEKWGQYSLNCLKSCLELYSEAVSDLEKALKGLKMEDYETAKTG 135

Query: 63  LSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINMC 109
           +SAAMDAP+SCEDGYKEKDGEVSPL+EINDGFFQL+AISLAFINMC
Sbjct: 136 VSAAMDAPVSCEDGYKEKDGEVSPLSEINDGFFQLVAISLAFINMC 181

[Close]

BLAST of Cla016135 vs. TrEMBL
Match: A0A0D2PIZ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G141900 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT IGS+IS LL   S   G ++ NCLK C E+YS A S LE  L A +  DYGTAN
Sbjct: 72  IANATAIGSKISKLLDNKSV--GMFARNCLKDCSELYSLAGSSLETGLDAFQAVDYGTAN 131

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
             +SAA+DAP++CED +KEK+G VSPLT+ N+ F QL AI LAF+ M
Sbjct: 132 AEISAALDAPVTCEDQFKEKNGLVSPLTKENNNFRQLTAIPLAFMKM 176

[Close]

BLAST of Cla016135 vs. TrEMBL
Match: A0A0D2PRX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G141700 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-22
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT IGS+IS LL   +++ G ++ NCLK C E+YS A S LE  L A +  DYGTAN
Sbjct: 72  IANATAIGSKISKLL--DNKRVGMFARNCLKDCSELYSLAGSSLEAGLDAFQAVDYGTAN 131

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
             +SAA+DAP++CED +KEK G VSPLT+ N+ F QL AI LAF+ M
Sbjct: 132 AEISAALDAPVTCEDQFKEKKGLVSPLTKENNNFRQLTAIPLAFMKM 176

[Close]

BLAST of Cla016135 vs. TrEMBL
Match: A0A0D2N350_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G141800 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-21
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT IGS+IS LL   S   G ++ NCLK C E+YS A S LE  L A +  DYGTAN
Sbjct: 72  IANATAIGSKISKLLDNKSV--GMFARNCLKDCSELYSLAGSSLETGLDAFQAIDYGTAN 131

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
             +SAA+DAP++CED +KE++G VSPLT+ N+ F QL AI LAF+ M
Sbjct: 132 AEISAALDAPVTCEDQFKEENGLVSPLTKENNNFRQLTAIPLAFMKM 176

[Close]

BLAST of Cla016135 vs. TrEMBL
Match: A0A061G2M1_THECC (Plant invertase/pectin methylesterase inhibitor superfamily protein, putative OS=Theobroma cacao GN=TCM_015798 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT I S IS LLK  ++     + +CL+ C E+YS+A  +LE    A++ +DYGTA 
Sbjct: 147 ISNATSISSIISKLLK--NKNLDNPTRSCLEDCSELYSDAQPNLEIGGQAVESKDYGTAK 206

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
           T +SAA+DAP++CEDG+KE++G VSPLT+ ND FFQL  + LAFIN+
Sbjct: 207 TVISAALDAPVTCEDGFKEREGLVSPLTKENDEFFQLTVVPLAFINL 251

[Close]

BLAST of Cla016135 vs. NCBI nr
Match: gi|449461581|ref|XP_004148520.1| (PREDICTED: putative invertase inhibitor [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 92/106 (86.79%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 3   NATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTANTG 62
           NATEIGSEIS+L+K  SEKWG+YSLNCLKSCLE+YSEAVSDLEKAL  LKMEDY TA TG
Sbjct: 76  NATEIGSEISELMKRRSEKWGQYSLNCLKSCLELYSEAVSDLEKALKGLKMEDYETAKTG 135

Query: 63  LSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINMC 109
           +SAAMDAP+SCEDGYKEKDGEVSPL+EINDGFFQL+AISLAFINMC
Sbjct: 136 VSAAMDAPVSCEDGYKEKDGEVSPLSEINDGFFQLVAISLAFINMC 181

[Close]

BLAST of Cla016135 vs. NCBI nr
Match: gi|659131910|ref|XP_008465919.1| (PREDICTED: putative invertase inhibitor [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-43
Identity = 89/106 (83.96%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 3   NATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTANTG 62
           NATEI SEIS+L+K +SEKWGKYSLNCLKSCLE+YSEAVSDL+KAL  LKMEDY TA T 
Sbjct: 76  NATEIRSEISELMKRTSEKWGKYSLNCLKSCLELYSEAVSDLKKALRGLKMEDYETAKTA 135

Query: 63  LSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINMC 109
           +SAAMDAP+SCEDGYKEKDGEVSPL+E NDGFFQL+AISLAFINMC
Sbjct: 136 VSAAMDAPVSCEDGYKEKDGEVSPLSETNDGFFQLVAISLAFINMC 181

[Close]

BLAST of Cla016135 vs. NCBI nr
Match: gi|823124281|ref|XP_012479339.1| (PREDICTED: putative invertase inhibitor [Gossypium raimondii])

HSP 1 Score: 111.7 bits (278), Expect = 8.2e-22
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT IGS+IS LL   S   G ++ NCLK C E+YS A S LE  L A +  DYGTAN
Sbjct: 72  IANATAIGSKISKLLDNKSV--GMFARNCLKDCSELYSLAGSSLETGLDAFQAVDYGTAN 131

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
             +SAA+DAP++CED +KEK+G VSPLT+ N+ F QL AI LAF+ M
Sbjct: 132 AEISAALDAPVTCEDQFKEKNGLVSPLTKENNNFRQLTAIPLAFMKM 176

[Close]

BLAST of Cla016135 vs. NCBI nr
Match: gi|823124262|ref|XP_012479250.1| (PREDICTED: putative invertase inhibitor [Gossypium raimondii])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT IGS+IS LL   +++ G ++ NCLK C E+YS A S LE  L A +  DYGTAN
Sbjct: 72  IANATAIGSKISKLL--DNKRVGMFARNCLKDCSELYSLAGSSLEAGLDAFQAVDYGTAN 131

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
             +SAA+DAP++CED +KEK G VSPLT+ N+ F QL AI LAF+ M
Sbjct: 132 AEISAALDAPVTCEDQFKEKKGLVSPLTKENNNFRQLTAIPLAFMKM 176

[Close]

BLAST of Cla016135 vs. NCBI nr
Match: gi|823124264|ref|XP_012479259.1| (PREDICTED: putative invertase inhibitor [Gossypium raimondii])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-21
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 1   MGNATEIGSEISDLLKGSSEKWGKYSLNCLKSCLEIYSEAVSDLEKALGALKMEDYGTAN 60
           + NAT IGS+IS LL   S   G ++ NCLK C E+YS A S LE  L A +  DYGTAN
Sbjct: 72  IANATAIGSKISKLLDNKSV--GMFARNCLKDCSELYSLAGSSLETGLDAFQAIDYGTAN 131

Query: 61  TGLSAAMDAPMSCEDGYKEKDGEVSPLTEINDGFFQLIAISLAFINM 108
             +SAA+DAP++CED +KE++G VSPLT+ N+ F QL AI LAF+ M
Sbjct: 132 AEISAALDAPVTCEDQFKEENGLVSPLTKENNNFRQLTAIPLAFMKM 176

The following BLAST results are available for this feature:

BLAST of Cla016135 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PLA1_PLAAC	1.8e-13	39.05	Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1	[more]

BLAST of Cla016135 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHE9_CUCSA	1.3e-45	86.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910710 PE=4 SV=1	[more]
A0A0D2PIZ3_GOSRA	5.7e-22	56.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G141900 PE=4 SV=1	[more]
A0A0D2PRX8_GOSRA	9.7e-22	55.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G141700 PE=4 SV=1	[more]
A0A0D2N350_GOSRA	2.2e-21	55.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G141800 PE=4 SV=1	[more]
A0A061G2M1_THECC	2.4e-20	51.40	Plant invertase/pectin methylesterase inhibitor superfamily protein, putative OS...	[more]

BLAST of Cla016135 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461581\|ref\|XP_004148520.1\|	1.8e-45	86.79	PREDICTED: putative invertase inhibitor [Cucumis sativus]	[more]
gi\|659131910\|ref\|XP_008465919.1\|	1.7e-43	83.96	PREDICTED: putative invertase inhibitor [Cucumis melo]	[more]
gi\|823124281\|ref\|XP_012479339.1\|	8.2e-22	56.07	PREDICTED: putative invertase inhibitor [Gossypium raimondii]	[more]
gi\|823124262\|ref\|XP_012479250.1\|	1.4e-21	55.14	PREDICTED: putative invertase inhibitor [Gossypium raimondii]	[more]
gi\|823124264\|ref\|XP_012479259.1\|	3.1e-21	55.14	PREDICTED: putative invertase inhibitor [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006501	Pectinesterase_inhib_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004857	enzyme inhibitor activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004857	enzyme inhibitor activity
molecular_function	GO:0030599	pectinesterase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016135	Cla016135.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006501	Pectinesterase inhibitor domain	GENE3D	G3DSA:1.20.140.40		coord: 2..107 score: 8.8
IPR006501	Pectinesterase inhibitor domain	PFAM	PF04043	PMEI	coord: 3..103 score: 1.6
IPR006501	Pectinesterase inhibitor domain	SMART	SM00856	PMEI_2	coord: 3..104 score: 1.
IPR006501	Pectinesterase inhibitor domain	TIGRFAMs	TIGR01614	TIGR01614	coord: 20..107 score: 9.6
IPR006501	Pectinesterase inhibitor domain	unknown	SSF101148	Plant invertase/pectin methylesterase inhibitor	coord: 3..107 score: 2.09
None	No IPR available	unknown	Coil	Coil	coord: 34..54 scor
None	No IPR available	PANTHER	PTHR31707	FAMILY NOT NAMED	coord: 3..109 score: 1.7
None	No IPR available	PANTHER	PTHR31707:SF47	PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR DOMAIN-CONTAINING PROTEIN	coord: 3..109 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016135	Cla97C09G175280	Watermelon (97103) v2	wmwmbB041
Cla016135	Csa3G128870	Cucumber (Chinese Long) v2	cuwmB187
Cla016135	Csa3G910710	Cucumber (Chinese Long) v2	cuwmB180
Cla016135	MELO3C003367	Melon (DHL92) v3.5.1	mewmB342
Cla016135	CSPI03G47160	Wild cucumber (PI 183967)	cpiwmB183
Cla016135	Cucsa.313560	Cucumber (Gy14) v1	cgywmB561
Cla016135	CmaCh19G003750	Cucurbita maxima (Rimu)	cmawmB472
Cla016135	CmoCh02G016270	Cucurbita moschata (Rifu)	cmowmB537
Cla016135	CmoCh19G003790	Cucurbita moschata (Rifu)	cmowmB465
Cla016135	Lsi05G000450	Bottle gourd (USVL1VR-Ls)	lsiwmB347
Cla016135	Cp4.1LG09g06690	Cucurbita pepo (Zucchini)	cpewmB019
Cla016135	Cp4.1LG05g01970	Cucurbita pepo (Zucchini)	cpewmB684
Cla016135	CsGy3G010390	Cucumber (Gy14) v2	cgybwmB176
Cla016135	CsGy3G044550	Cucumber (Gy14) v2	cgybwmB170
Cla016135	MELO3C003367.2	Melon (DHL92) v3.6.1	medwmB340
Cla016135	Carg08815	Silver-seed gourd	carwmB0776
Cla016135	CsaV3_3G049590	Cucumber (Chinese Long) v3	cucwmB192
Cla016135	CsaV3_3G010420	Cucumber (Chinese Long) v3	cucwmB199
Cla016135	Bhi05G000354	Wax gourd	wgowmB252

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla016135	Cla021374	Watermelon (97103) v1	wmwmB020

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016135	Silver-seed gourd	carwmB0560
Cla016135	Silver-seed gourd	carwmB0702
Cla016135	Cucumber (Chinese Long) v3	cucwmB193
Cla016135	Watermelon (97103) v2	wmwmbB009
Cla016135	Wax gourd	wgowmB004
Cla016135	Wax gourd	wgowmB168
Cla016135	Wax gourd	wgowmB242
Cla016135	Watermelon (97103) v1	wmwmB007
Cla016135	Cucumber (Gy14) v1	cgywmB582
Cla016135	Cucurbita maxima (Rimu)	cmawmB290
Cla016135	Cucurbita maxima (Rimu)	cmawmB547
Cla016135	Cucurbita maxima (Rimu)	cmawmB779
Cla016135	Cucurbita moschata (Rifu)	cmowmB283
Cla016135	Cucurbita moschata (Rifu)	cmowmB477
Cla016135	Cucurbita moschata (Rifu)	cmowmB773
Cla016135	Wild cucumber (PI 183967)	cpiwmB184
Cla016135	Melon (DHL92) v3.5.1	mewmB444
Cla016135	Watermelon (Charleston Gray)	wcgwmB007
Cla016135	Watermelon (Charleston Gray)	wcgwmB045
Cla016135	Cucumber (Chinese Long) v2	cuwmB181
Cla016135	Cucurbita pepo (Zucchini)	cpewmB200
Cla016135	Bottle gourd (USVL1VR-Ls)	lsiwmB424
Cla016135	Cucumber (Gy14) v2	cgybwmB171
Cla016135	Melon (DHL92) v3.6.1	medwmB430
Cla016135	Melon (DHL92) v3.6.1	medwmB431