Cla016003 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016003
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Presequence protease 1, chloroplastic/mitochondrial (AHRD V1 ***- PREP1_ARATH)
Location	Chr2 : 6095021 .. 6095185 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAACATCTCTCCTAACAGCTTGAAGGACTTCAAGAACTTCGCCGATGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGGTTTTTTCCAAGTGAAGAAAGCCCTCTAA

mRNA sequence

ATGGTAAACATCTCTCCTAACAGCTTGAAGGACTTCAAGAACTTCGCCGATGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGGTTTTTTCCAAGTGAAGAAAGCCCTCTAA

Coding sequence (CDS)

ATGGTAAACATCTCTCCTAACAGCTTGAAGGACTTCAAGAACTTCGCCGATGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGGTTTTTTCCAAGTGAAGAAAGCCCTCTAA

Protein sequence

MVNISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL

Homology

[Close]

BLAST of Cla016003 vs. Swiss-Prot
Match: PREP1_ARATH (Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-10
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFK+FA A++ VR+KGV V+VAS ED++ A++ER  FF+VKKAL
Sbjct: 1030 ILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNERSNFFEVKKAL 1080

[Close]

BLAST of Cla016003 vs. Swiss-Prot
Match: PREP2_ARATH (Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-09
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKA 54
            I   SLKDFK FA+A+++V +KGV V+VAS ED++ A+ ER  FF+VKKA
Sbjct: 1029 ILSTSLKDFKEFAEAIDSVSDKGVAVAVASQEDIDAANRERSNFFEVKKA 1078

[Close]

BLAST of Cla016003 vs. TrEMBL
Match: A0A0A0K809_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073760 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-16
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFKNFADALEAVRNKGVVVSVASPEDVETAH ERPGFFQVKKAL
Sbjct: 1034 ILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHGERPGFFQVKKAL 1084

[Close]

BLAST of Cla016003 vs. TrEMBL
Match: V7CIR1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G054400g PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-12
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFKNF DA+EAV+NKGVVV+VASPEDV+ A+ +RP FFQVKKAL
Sbjct: 1028 ILSTSLKDFKNFTDAMEAVKNKGVVVAVASPEDVDAANKDRPDFFQVKKAL 1078

[Close]

BLAST of Cla016003 vs. TrEMBL
Match: A0A0S3T7K4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G250100 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-11
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFK+F DA+EAV+NKGVVV+VASPEDV+ A  +RP FFQVKKAL
Sbjct: 1032 ILSTSLKDFKDFTDAMEAVKNKGVVVAVASPEDVDAAKKDRPDFFQVKKAL 1082

[Close]

BLAST of Cla016003 vs. TrEMBL
Match: A0A0L9T7U8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s007000 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-11
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFK+F DA+EAV+NKGVVV+VASPEDV+ A  +RP FFQVKKAL
Sbjct: 1031 ILSTSLKDFKDFTDAMEAVKNKGVVVAVASPEDVDAAKKDRPDFFQVKKAL 1081

[Close]

BLAST of Cla016003 vs. TrEMBL
Match: A0A0R4J2L6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G244900 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-11
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFK F DA+EAV++KGVVV+VASPEDV+TA+ +RP FFQVKKAL
Sbjct: 1028 ILSTSLKDFKIFMDAMEAVKDKGVVVAVASPEDVDTANKDRPDFFQVKKAL 1078

[Close]

BLAST of Cla016003 vs. NCBI nr
Match: gi|659109889|ref|XP_008454934.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-17
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL
Sbjct: 1034 ILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 1084

[Close]

BLAST of Cla016003 vs. NCBI nr
Match: gi|449438420|ref|XP_004136986.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFKNFADALEAVRNKGVVVSVASPEDVETAH ERPGFFQVKKAL
Sbjct: 1034 ILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHGERPGFFQVKKAL 1084

[Close]

BLAST of Cla016003 vs. NCBI nr
Match: gi|593788400|ref|XP_007157239.1| (hypothetical protein PHAVU_002G054400g [Phaseolus vulgaris])

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFKNF DA+EAV+NKGVVV+VASPEDV+ A+ +RP FFQVKKAL
Sbjct: 1028 ILSTSLKDFKNFTDAMEAVKNKGVVVAVASPEDVDAANKDRPDFFQVKKAL 1078

[Close]

BLAST of Cla016003 vs. NCBI nr
Match: gi|672170558|ref|XP_008805339.1| (PREDICTED: LOW QUALITY PROTEIN: presequence protease 1, chloroplastic/mitochondrial-like, partial [Phoenix dactylifera])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 4   ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
           I   SLKDFK FADA+EAV+N GVVV+VASPEDV  A+ ERPGFF VKKAL
Sbjct: 920 ILSTSLKDFKEFADAVEAVKNNGVVVAVASPEDVAAANGERPGFFDVKKAL 970

[Close]

BLAST of Cla016003 vs. NCBI nr
Match: gi|951052305|ref|XP_014520661.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Vigna radiata var. radiata])

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGFFQVKKAL 55
            I   SLKDFK+F DA+EAV+NKGVVV+VASPEDV+ A  +RP FFQVKKAL
Sbjct: 1029 ILSTSLKDFKDFTDAMEAVKNKGVVVAVASPEDVDAAKKDRPDFFQVKKAL 1079

The following BLAST results are available for this feature:

BLAST of Cla016003 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PREP1_ARATH	2.1e-10	60.78	Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=P...	[more]
PREP2_ARATH	3.0e-09	58.00	Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=P...	[more]

BLAST of Cla016003 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K809_CUCSA	1.0e-16	92.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073760 PE=3 SV=1	[more]
V7CIR1_PHAVU	2.0e-12	74.51	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G054400g PE=3 SV=1	[more]
A0A0S3T7K4_PHAAN	1.3e-11	72.55	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G250100 PE=...	[more]
A0A0L9T7U8_PHAAN	1.3e-11	72.55	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s007000 PE=3 SV=1	[more]
A0A0R4J2L6_SOYBN	2.9e-11	72.55	Uncharacterized protein OS=Glycine max GN=GLYMA_01G244900 PE=3 SV=1	[more]

BLAST of Cla016003 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109889\|ref\|XP_008454934.1\|	5.1e-17	94.12	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis mel...	[more]
gi\|449438420\|ref\|XP_004136986.1\|	1.5e-16	92.16	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis sat...	[more]
gi\|593788400\|ref\|XP_007157239.1\|	2.9e-12	74.51	hypothetical protein PHAVU_002G054400g [Phaseolus vulgaris]	[more]
gi\|672170558\|ref\|XP_008805339.1\|	1.4e-11	74.51	PREDICTED: LOW QUALITY PROTEIN: presequence protease 1, chloroplastic/mitochondr...	[more]
gi\|951052305\|ref\|XP_014520661.1\|	1.9e-11	72.55	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Vigna radia...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008233	peptidase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU29759	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016003	Cla016003.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU29759	WMU29759	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016003	ClCG02G005830	Watermelon (Charleston Gray)	wcgwmB198

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016003	Melon (DHL92) v3.5.1	mewmB240
Cla016003	Melon (DHL92) v3.5.1	mewmB538
Cla016003	Melon (DHL92) v3.5.1	mewmB592
Cla016003	Watermelon (Charleston Gray)	wcgwmB162
Cla016003	Watermelon (Charleston Gray)	wcgwmB421
Cla016003	Cucumber (Chinese Long) v2	cuwmB346
Cla016003	Cucumber (Chinese Long) v2	cuwmB605
Cla016003	Cucurbita pepo (Zucchini)	cpewmB268
Cla016003	Cucurbita pepo (Zucchini)	cpewmB665
Cla016003	Bottle gourd (USVL1VR-Ls)	lsiwmB164
Cla016003	Bottle gourd (USVL1VR-Ls)	lsiwmB492
Cla016003	Cucumber (Gy14) v2	cgybwmB142
Cla016003	Cucumber (Gy14) v2	cgybwmB567
Cla016003	Melon (DHL92) v3.6.1	medwmB232
Cla016003	Melon (DHL92) v3.6.1	medwmB323
Cla016003	Melon (DHL92) v3.6.1	medwmB579
Cla016003	Silver-seed gourd	carwmB0198
Cla016003	Silver-seed gourd	carwmB0538
Cla016003	Silver-seed gourd	carwmB0812
Cla016003	Cucumber (Chinese Long) v3	cucwmB164
Cla016003	Cucumber (Chinese Long) v3	cucwmB363
Cla016003	Cucumber (Chinese Long) v3	cucwmB635
Cla016003	Watermelon (97103) v2	wmwmbB306
Cla016003	Watermelon (97103) v2	wmwmbB317
Cla016003	Watermelon (97103) v2	wmwmbB348
Cla016003	Wax gourd	wgowmB280
Cla016003	Watermelon (97103) v1	wmwmB072
Cla016003	Watermelon (97103) v1	wmwmB143
Cla016003	Cucumber (Gy14) v1	cgywmB427
Cla016003	Cucumber (Gy14) v1	cgywmB435
Cla016003	Cucurbita maxima (Rimu)	cmawmB127
Cla016003	Cucurbita maxima (Rimu)	cmawmB503
Cla016003	Cucurbita maxima (Rimu)	cmawmB842
Cla016003	Cucurbita moschata (Rifu)	cmowmB109
Cla016003	Cucurbita moschata (Rifu)	cmowmB496
Cla016003	Cucurbita moschata (Rifu)	cmowmB833