ClCG02G005830 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G005830
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Presequence protease 1, chloroplastic/mitochondrial
Location	CG_Chr02 : 6427437 .. 6428155 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAACATCTCTCCTAACAGCTTGAAGGACTTCAAGAACTTCGCCGATGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGGTTTTTTCCAAGTGAAGAAAGCCCTCTAAGATGCGACCCTCCAAGCTCCCATTGCAGCACCATCTCCACTTCCAAAAACCAAAGAGAAGAGGAACAAAACAGATTCCAGAGAAAGAAAGAAAAAGAAGAATAAAAAAAAAAAAAGGTAACTAGCATTATTGATTCATTTACCCATTACTGTTATACCATGAACAAAAACATTGCATTGTTTCAGAAAAATTCATTAGGAGACAAAAGAAAGTTAATATTTGAGCAGCGGGAAATGATTGTTGTGTACGGAAACATGGGGATTTGATTGATAGTTGATAAAAAGGGGCTTTTCTACTCTTAAATGCTGTTATCAGTGGTGTGTGTTCATTGATAAATATGAACAGAAGGAATGGTGATGTATTTAATTCTTGCGTCTCCTCTATTCACTTGCTCTCAATTTTCTTATCAAGTTTTGTTGTTCTGACTTTCGCCCCCGTTTCAATTTAATAAAAGAAGCATATTTATTGTTTATTTTCAAGTACATCTGACTTGCTTTTTATTTTATTTAGGTGTAATTATAACTCTAGTATCTGTTTCACTTGTACAGTCATGA

mRNA sequence

ATGGTAAACATCTCTCCTAACAGCTTGAAGGACTTCAAGAACTTCGCCGATGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGGTGTAATTATAACTCTAGTATCTGTTTCACTTGTACAGTCATGA

Coding sequence (CDS)

ATGGTAAACATCTCTCCTAACAGCTTGAAGGACTTCAAGAACTTCGCCGATGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGGTGTAATTATAACTCTAGTATCTGTTTCACTTGTACAGTCATGA

Protein sequence

MVNISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPGVIITLVSVSLVQS

Homology

[Close]

BLAST of ClCG02G005830 vs. Swiss-Prot
Match: PREP1_ARATH (Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSER 45
            I   SLKDFK+FA A++ VR+KGV V+VAS ED++ A++ER
Sbjct: 1030 ILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNER 1070

[Close]

BLAST of ClCG02G005830 vs. TrEMBL
Match: A0A0A0K809_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073760 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 47
            I   SLKDFKNFADALEAVRNKGVVVSVASPEDVETAH ERPG
Sbjct: 1034 ILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHGERPG 1076

[Close]

BLAST of ClCG02G005830 vs. TrEMBL
Match: V7CIR1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G054400g PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.6e-08
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERP 46
            I   SLKDFKNF DA+EAV+NKGVVV+VASPEDV+ A+ +RP
Sbjct: 1028 ILSTSLKDFKNFTDAMEAVKNKGVVVAVASPEDVDAANKDRP 1069

[Close]

BLAST of ClCG02G005830 vs. TrEMBL
Match: A0A0L9T7U8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s007000 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-07
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERP 46
            I   SLKDFK+F DA+EAV+NKGVVV+VASPEDV+ A  +RP
Sbjct: 1031 ILSTSLKDFKDFTDAMEAVKNKGVVVAVASPEDVDAAKKDRP 1072

[Close]

BLAST of ClCG02G005830 vs. TrEMBL
Match: A0A0S3T7K4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G250100 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-07
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERP 46
            I   SLKDFK+F DA+EAV+NKGVVV+VASPEDV+ A  +RP
Sbjct: 1032 ILSTSLKDFKDFTDAMEAVKNKGVVVAVASPEDVDAAKKDRP 1073

[Close]

BLAST of ClCG02G005830 vs. TrEMBL
Match: M0U0I0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-07
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 47
            I   SLKDFK FADA+EAV+N GVVV+VASPEDV  A++ER G
Sbjct: 1024 ILSTSLKDFKEFADAIEAVKNSGVVVAVASPEDVTRANTERSG 1066

[Close]

BLAST of ClCG02G005830 vs. TAIR10
Match: AT3G19170.1 (AT3G19170.1 presequence protease 1)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSER 45
            I   SLKDFK+FA A++ VR+KGV V+VAS ED++ A++ER
Sbjct: 1030 ILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNER 1070

[Close]

BLAST of ClCG02G005830 vs. TAIR10
Match: AT1G49630.1 (AT1G49630.1 presequence protease 2)

HSP 1 Score: 49.7 bits (117), Expect = 7.3e-07
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSER 45
            I   SLKDFK FA+A+++V +KGV V+VAS ED++ A+ ER
Sbjct: 1029 ILSTSLKDFKEFAEAIDSVSDKGVAVAVASQEDIDAANRER 1069

[Close]

BLAST of ClCG02G005830 vs. NCBI nr
Match: gi|659109889|ref|XP_008454934.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-12
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 47
            I   SLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG
Sbjct: 1034 ILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 1076

[Close]

BLAST of ClCG02G005830 vs. NCBI nr
Match: gi|449438420|ref|XP_004136986.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 47
            I   SLKDFKNFADALEAVRNKGVVVSVASPEDVETAH ERPG
Sbjct: 1034 ILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHGERPG 1076

[Close]

BLAST of ClCG02G005830 vs. NCBI nr
Match: gi|593788400|ref|XP_007157239.1| (hypothetical protein PHAVU_002G054400g [Phaseolus vulgaris])

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-08
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERP 46
            I   SLKDFKNF DA+EAV+NKGVVV+VASPEDV+ A+ +RP
Sbjct: 1028 ILSTSLKDFKNFTDAMEAVKNKGVVVAVASPEDVDAANKDRP 1069

[Close]

BLAST of ClCG02G005830 vs. NCBI nr
Match: gi|672204878|ref|XP_008779032.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Phoenix dactylifera])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 4   ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 47
           I   SLKDFK FADA+EAV+N GVVV+VASPEDV  A+ ERPG
Sbjct: 284 ILSTSLKDFKEFADAVEAVKNNGVVVAVASPEDVAAANGERPG 326

[Close]

BLAST of ClCG02G005830 vs. NCBI nr
Match: gi|743848786|ref|XP_010939450.1| (PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like isoform X1 [Elaeis guineensis])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 4    ISPNSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPG 47
            I   SLKDFK FADA+EAV+N GVVV+VASPEDV  A+ ERPG
Sbjct: 1022 ILSTSLKDFKEFADAVEAVKNNGVVVAVASPEDVAVANGERPG 1064

The following BLAST results are available for this feature:

BLAST of ClCG02G005830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PREP1_ARATH	2.6e-06	58.54	Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=P...	[more]

BLAST of ClCG02G005830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K809_CUCSA	3.8e-12	90.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073760 PE=3 SV=1	[more]
V7CIR1_PHAVU	5.6e-08	71.43	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G054400g PE=3 SV=1	[more]
A0A0L9T7U8_PHAAN	3.7e-07	69.05	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan303s007000 PE=3 SV=1	[more]
A0A0S3T7K4_PHAAN	3.7e-07	69.05	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G250100 PE=...	[more]
M0U0I0_MUSAM	6.2e-07	69.77	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]

BLAST of ClCG02G005830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19170.1	1.5e-07	58.54	presequence protease 1	[more]
AT1G49630.1	7.3e-07	56.10	presequence protease 2	[more]

BLAST of ClCG02G005830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109889\|ref\|XP_008454934.1\|	1.9e-12	93.02	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis mel...	[more]
gi\|449438420\|ref\|XP_004136986.1\|	5.4e-12	90.70	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis sat...	[more]
gi\|593788400\|ref\|XP_007157239.1\|	8.1e-08	71.43	hypothetical protein PHAVU_002G054400g [Phaseolus vulgaris]	[more]
gi\|672204878\|ref\|XP_008779032.1\|	1.4e-07	72.09	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Phoenix dac...	[more]
gi\|743848786\|ref\|XP_010939450.1\|	1.4e-07	72.09	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like isoform X1 [...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008233	peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G005830.1	ClCG02G005830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G005830	Cla016003	Watermelon (97103) v1	wcgwmB198

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G005830	Silver-seed gourd	carwcgB0203
ClCG02G005830	Silver-seed gourd	carwcgB0523
ClCG02G005830	Silver-seed gourd	carwcgB0746
ClCG02G005830	Silver-seed gourd	carwcgB0786
ClCG02G005830	Cucumber (Chinese Long) v3	cucwcgB304
ClCG02G005830	Cucumber (Chinese Long) v3	cucwcgB572
ClCG02G005830	Watermelon (97103) v2	wcgwmbB129
ClCG02G005830	Watermelon (97103) v2	wcgwmbB138
ClCG02G005830	Watermelon (97103) v2	wcgwmbB167
ClCG02G005830	Wax gourd	wcgwgoB275
ClCG02G005830	Wax gourd	wcgwgoB314
ClCG02G005830	Watermelon (Charleston Gray)	wcgwcgB086
ClCG02G005830	Watermelon (Charleston Gray)	wcgwcgB138
ClCG02G005830	Cucumber (Gy14) v1	cgywcgB396
ClCG02G005830	Cucumber (Gy14) v1	cgywcgB405
ClCG02G005830	Cucurbita maxima (Rimu)	cmawcgB101
ClCG02G005830	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G005830	Cucurbita maxima (Rimu)	cmawcgB757
ClCG02G005830	Cucurbita moschata (Rifu)	cmowcgB088
ClCG02G005830	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G005830	Cucurbita moschata (Rifu)	cmowcgB759
ClCG02G005830	Wild cucumber (PI 183967)	cpiwcgB136
ClCG02G005830	Wild cucumber (PI 183967)	cpiwcgB576
ClCG02G005830	Cucumber (Chinese Long) v2	cuwcgB547
ClCG02G005830	Melon (DHL92) v3.5.1	mewcgB197
ClCG02G005830	Melon (DHL92) v3.5.1	mewcgB518
ClCG02G005830	Watermelon (97103) v1	wcgwmB192
ClCG02G005830	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G005830	Cucurbita pepo (Zucchini)	cpewcgB590
ClCG02G005830	Bottle gourd (USVL1VR-Ls)	lsiwcgB132
ClCG02G005830	Bottle gourd (USVL1VR-Ls)	lsiwcgB428
ClCG02G005830	Cucumber (Gy14) v2	cgybwcgB125
ClCG02G005830	Cucumber (Gy14) v2	cgybwcgB507
ClCG02G005830	Melon (DHL92) v3.6.1	medwcgB192
ClCG02G005830	Melon (DHL92) v3.6.1	medwcgB272
ClCG02G005830	Melon (DHL92) v3.6.1	medwcgB513