Cla015959 (gene) Watermelon (97103) v1

Overview
NameCla015959
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMitochodrial transcription termination factor-related (AHRD V1 *--- A2Q1V4_MEDTR); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related
LocationChr2 : 5469639 .. 5470289 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGGAGCTGCAACTCCATTCACCACCGTCTCTTCCTTCTCTCCCTCCAACGCTCCCACTCCCAGATCTCGCCTTCTTCCTCTTCCATTCATCAACTTCCGCACTGCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCACATCATCGATTCCCGAACCAGATTCCATTCTCCCGATGCCGTCGAGCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCGGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCAACGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCGGTGCCCTAGGATTCTGTTCTCCGACGTCGAGTTATGTCTCCGGCCGACGCATAGATTCTTAAAGCAATTAGGGATAGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCACCTGCTGANNNNNNNTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTAAAGGAGATAGGATTCTCGCAGGAGGAGGCGGCAAAGGTTTGCGGGAGAATGCCGGCGATATTCGGGTACAGTGTGGAGGAGAATTTGTGGCCTAA

mRNA sequence

ATGGCGGTTGGAGCTGCAACTCCATTCACCACCGTCTCTTCCTTCTCTCCCTCCAACGCTCCCACTCCCAGATCTCGCCTTCTTCCTCTTCCATTCATCAACTTCCGCACTGCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCACATCATCGATTCCCGAACCAGATTCCATTCTCCCGATGCCGTCGAGCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCGGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCAACGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCGGTGCCCTAGGATTCTGTTCTCCGACGTCGAGTTATGTCTCCGGCCGACGCATAGATTCTTAAAGCAATTAGGGATAGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCACCTGCTGANNNNNNNTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTAAAGGAGATAGGATTCTCGCAGGAGGAGGCGGCAAAGGTTTGCGGGAGAATGCCGGCGATATTCGGGTACAGTGTGGAGGAGAATTTGTGGCCTAA

Coding sequence (CDS)

ATGGCGGTTGGAGCTGCAACTCCATTCACCACCGTCTCTTCCTTCTCTCCCTCCAACGCTCCCACTCCCAGATCTCGCCTTCTTCCTCTTCCATTCATCAACTTCCGCACTGCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCACATCATCGATTCCCGAACCAGATTCCATTCTCCCGATGCCGTCGAGCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCGGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCAACGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCGGTGCCCTAGGATTCTGTTCTCCGACGTCGAGTTATGTCTCCGGCCGACGCATAGATTCTTAAAGCAATTAGGGATAGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCACCTGCTGANNNNNNNTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTAAAGGAGATAGGATTCTCGCAGGAGGAGGCGGCAAAGGTTTGCGGGAGAATGCCGGCGATATTCGGGTACAGTGTGGAGGAGAATTTGTGGCCTAA

Protein sequence

MAVGAATPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAEHSGGEAKKQNQILKGDRILAGGGGKGLRENAGDIRVQCGGEFVA
Homology
[Close]
BLAST of Cla015959 vs. Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 42/139 (30.22%), Postives = 66/139 (47.48%), Query Frame = 1 

Query: 41  QNLRYLKSLHIIDSRTRFHSPDA----VEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFT 100
           + L YL+ L++   +    +P      +  +++    L S G S     R+  + P L T
Sbjct: 35  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 94

Query: 101 PNFDP-TDIAPIFHFLNADLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIEN 160
              DP ++I P+  FL+ ++S S Q+    I RCPR+L S V+  LRP   FLK LG   
Sbjct: 95  S--DPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 154

Query: 161 LKSPSNLNSHLLXXXAEHS 175
             + ++ N+ LL    E +
Sbjct: 155 RDTITSRNTVLLVSNVERT 171

[Close]
BLAST of Cla015959 vs. TrEMBL
Match: A0A0A0K870_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.3e-65
Identity = 132/179 (73.74%), Postives = 144/179 (80.45%), Query Frame = 1 

Query: 1   MAVGAAT---PFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVG       F  + SFS    PTP +R     L  P INFRT+HHQN+RYLKSL++ID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRFHSPDAV QILTTVHFLKSKGFSDSDFPRLAFLCP LFT NFD TDIAP+F FL  
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLL    E
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 179

[Close]
BLAST of Cla015959 vs. TrEMBL
Match: M5VJL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.6e-44
Identity = 99/169 (58.58%), Postives = 121/169 (71.60%), Query Frame = 1 

Query: 7   TPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRT---RFHSPDA 66
           TP ++ SS + SN P P     P  FI FRT++ +NLRYLK+L II   T   +   PDA
Sbjct: 10  TPSSSSSSLTTSN-PHP-----PSHFIKFRTSYRENLRYLKTLRIISPETNPKKLPLPDA 69

Query: 67  VEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESR 126
            +QIL+TV+FLKSKGFSD DFPRLAFL P+LF+P  DPTDIAP+F FL A+L A    S 
Sbjct: 70  TDQILSTVNFLKSKGFSDPDFPRLAFLSPKLFSPTLDPTDIAPVFDFLAAELPADPSSSC 129

Query: 127 GLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           GLILRCP +LFSDVE CLRPT  +LKQLG++ L +P+NLN+HLL    E
Sbjct: 130 GLILRCPDLLFSDVEFCLRPTLHYLKQLGLDKLGAPTNLNAHLLNTRVE 172

[Close]
BLAST of Cla015959 vs. TrEMBL
Match: D7TQ07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 93/165 (56.36%), Postives = 122/165 (73.94%), Query Frame = 1 

Query: 11  TVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFH---SPDAVEQI 70
           T+SS    ++ +  S   P   + FRT+H +NLRYLK+L IID  T+ H   SP+AV+Q+
Sbjct: 9   TISSIKSPSSQSLSSSEHPPYLLRFRTSHRENLRYLKTLGIIDPSTKPHKFPSPEAVDQV 68

Query: 71  LTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLIL 130
           L+TV+FLKSKGFS+ DFPRL+FLCP+LF+ + DPTDI P+F FL  DL+AS QES  LIL
Sbjct: 69  LSTVNFLKSKGFSEPDFPRLSFLCPKLFSSDSDPTDIEPVFDFLTLDLAASDQESCSLIL 128

Query: 131 RCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           RCP+IL SDVE CLRPT  +L++LG+E L  P++LN+HLL    E
Sbjct: 129 RCPQILLSDVEYCLRPTLLYLRKLGVEKLNVPTSLNAHLLNTRVE 173

[Close]
BLAST of Cla015959 vs. TrEMBL
Match: W9R114_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-40
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 1 

Query: 10  TTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHII---DSRTRFHSPDAVEQ 69
           ++VSS +P ++ +      P  FI FRT+H +NLRYLK+L I+   D       PD VE+
Sbjct: 20  SSVSSINPHSSSSSPPTFTPSRFIKFRTSHRENLRYLKTLGIVTADDKPKNLPLPDDVER 79

Query: 70  ILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLI 129
           IL  V FLKSKGFS++DFPRLAFL P LF+P FDP  IAP+F FL +D++A  +ES  LI
Sbjct: 80  ILAAVDFLKSKGFSNADFPRLAFLSPNLFSPGFDPAGIAPVFDFLASDVAALPEESCRLI 139

Query: 130 LRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           LRCP +LFS+VE CLRPT  +L++LG+E L SP+ LN+HLL    E
Sbjct: 140 LRCPALLFSNVEYCLRPTLDYLRKLGLERLNSPTTLNAHLLNTRVE 185

[Close]
BLAST of Cla015959 vs. TrEMBL
Match: A0A059BAH6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-40
Identity = 90/177 (50.85%), Postives = 117/177 (66.10%), Query Frame = 1 

Query: 6   ATPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFH---SPD 65
           A P  + S      A T  S      ++ FRT+H +N+RYL++L +ID  +R     SPD
Sbjct: 10  AIPAFSASCSKTIKACTKASSPYQPLYLRFRTSHVENVRYLRTLGVIDPVSRHRKLPSPD 69

Query: 66  AVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQES 125
            ++++L  V+FLKSKGFS+SDFPRLA+LCP LF    DPTDIAP+F FL  ++SAS QES
Sbjct: 70  TIDRVLNIVNFLKSKGFSESDFPRLAYLCPGLFASELDPTDIAPVFEFLTVEVSASAQES 129

Query: 126 RGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAEHSGGEAK 180
             LI +CP+ILFSDVE CL+PT  +L+QLGI  L  PS LN+HLL    E   G+ K
Sbjct: 130 CSLINKCPQILFSDVEYCLKPTLNYLRQLGIGRLNFPSTLNAHLLNTRVEKLHGKVK 186

[Close]
BLAST of Cla015959 vs. NCBI nr
Match: gi|659109777|ref|XP_008454873.1| (PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 7.4e-67
Identity = 136/179 (75.98%), Postives = 146/179 (81.56%), Query Frame = 1 

Query: 1   MAVGAAT---PFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVGA      F  VSSFS    PTP +R     L  P INFRT+H QNLRYLKSL+IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRF SPDAV+QILTTVHFLKSKGFSDSDFPRLAF CP LFT NFD TDIAP+FHFL A
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLL    E
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 179

[Close]
BLAST of Cla015959 vs. NCBI nr
Match: gi|778725293|ref|XP_011658929.1| (PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 1.8e-65
Identity = 132/179 (73.74%), Postives = 144/179 (80.45%), Query Frame = 1 

Query: 1   MAVGAAT---PFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVG       F  + SFS    PTP +R     L  P INFRT+HHQN+RYLKSL++ID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRFHSPDAV QILTTVHFLKSKGFSDSDFPRLAFLCP LFT NFD TDIAP+F FL  
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLL    E
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 179

[Close]
BLAST of Cla015959 vs. NCBI nr
Match: gi|1009164985|ref|XP_015900794.1| (PREDICTED: uncharacterized protein LOC107433911 [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 4.7e-45
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 21  PTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFHS---PDAVEQILTTVHFLKSK 80
           PTP     P  FI FRT+H +NLRYLK+L +ID +T+ ++   PD V+QIL TV FLKSK
Sbjct: 30  PTPNQ---PPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDDVDQILLTVDFLKSK 89

Query: 81  GFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLILRCPRILFSDV 140
           GFSDSDFPRLAFL P+LF+ N DPTDIAP+F FL ADLSASV+++R LIL+CP ILFSDV
Sbjct: 90  GFSDSDFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTRRLILQCPPILFSDV 149

Query: 141 ELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           E CLRPT  +L++LG+E L  P++LN+HLL    E
Sbjct: 150 EYCLRPTLHYLRKLGLERLDRPTSLNAHLLNTRVE 181

[Close]
BLAST of Cla015959 vs. NCBI nr
Match: gi|1009165028|ref|XP_015900819.1| (PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 4.7e-45
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 21  PTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFHS---PDAVEQILTTVHFLKSK 80
           PTP     P  FI FRT+H +NLRYLK+L +ID +T+ ++   PD V+QIL TV FLKSK
Sbjct: 29  PTPNQ---PPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDDVDQILLTVDFLKSK 88

Query: 81  GFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLILRCPRILFSDV 140
           GFSDSDFPRLAFL P+LF+ N DPTDIAP+F FL ADLSASV+++R LIL+CP ILFSDV
Sbjct: 89  GFSDSDFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTRRLILQCPPILFSDV 148

Query: 141 ELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           E CLRPT  +L++LG+E L  P++LN+HLL    E
Sbjct: 149 EYCLRPTLHYLRKLGLERLDRPTSLNAHLLNTRVE 180

[Close]
BLAST of Cla015959 vs. NCBI nr
Match: gi|645262469|ref|XP_008236776.1| (PREDICTED: uncharacterized protein LOC103335539 [Prunus mume])

HSP 1 Score: 186.4 bits (472), Expect = 5.2e-44
Identity = 99/169 (58.58%), Postives = 122/169 (72.19%), Query Frame = 1 

Query: 7   TPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRT---RFHSPDA 66
           TP ++ SS + SN P P     P  FI FRT++ +NLRYLK+L II  +T   +   PDA
Sbjct: 10  TPSSSSSSLTTSN-PHP-----PSHFIKFRTSYRENLRYLKTLRIISPQTNPKKLPLPDA 69

Query: 67  VEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESR 126
            +QIL+TV+FLKSKGFS+ DFPRLAFL P+LF+P  DPTDIAP+F FL A+L A    S 
Sbjct: 70  TDQILSTVNFLKSKGFSEPDFPRLAFLSPKLFSPTLDPTDIAPVFDFLAAELPADPSSSC 129

Query: 127 GLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLXXXAE 173
           GLILRCP +LFSDVE CLRPT  +LKQLG+E L +P+NLN+HLL    E
Sbjct: 130 GLILRCPDLLFSDVEFCLRPTLHYLKQLGLEKLGAPTNLNAHLLNTRVE 172

The following BLAST results are available for this feature:
BLAST of Cla015959 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MTEF1_ARATH1.0e-0730.22Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN... [more]
BLAST of Cla015959 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K870_CUCSA1.3e-6573.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1[more]
M5VJL2_PRUPE3.6e-4458.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1[more]
D7TQ07_VITVI2.3e-4356.36Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=... [more]
W9R114_9ROSA1.4e-4053.61Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1[more]
A0A059BAH6_EUCGR2.4e-4050.85Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1[more]
BLAST of Cla015959 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109777|ref|XP_008454873.1|7.4e-6775.98PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo][more]
gi|778725293|ref|XP_011658929.1|1.8e-6573.74PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus][more]
gi|1009164985|ref|XP_015900794.1|4.7e-4562.58PREDICTED: uncharacterized protein LOC107433911 [Ziziphus jujuba][more]
gi|1009165028|ref|XP_015900819.1|4.7e-4562.58PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba][more]
gi|645262469|ref|XP_008236776.1|5.2e-4458.58PREDICTED: uncharacterized protein LOC103335539 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0071472 cellular response to salt stress
biological_process GO:0032502 developmental process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015959Cla015959.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 123..154
score: 5.8E-4coord: 49..80
score:
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 33..167
score: 1.2
NoneNo IPR availablePANTHERPTHR13068:SF19SUBFAMILY NOT NAMEDcoord: 33..167
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015959Cla97C02G032320Watermelon (97103) v2wmwmbB317
Cla015959Csa7G075660Cucumber (Chinese Long) v2cuwmB605
Cla015959ClCG02G005300Watermelon (Charleston Gray)wcgwmB198
Cla015959CSPI07G08120Wild cucumber (PI 183967)cpiwmB623
Cla015959Cucsa.220350Cucumber (Gy14) v1cgywmB427
Cla015959Lsi11G010650Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015959CsGy7G007670Cucumber (Gy14) v2cgybwmB567
Cla015959CsaV3_7G010220Cucumber (Chinese Long) v3cucwmB635
Cla015959Bhi05G001050Wax gourdwgowmB280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015959Watermelon (97103) v2wmwmbB348
Cla015959Watermelon (97103) v1wmwmB072
Cla015959Cucumber (Gy14) v1cgywmB155
Cla015959Cucumber (Gy14) v1cgywmB435
Cla015959Cucurbita maxima (Rimu)cmawmB127
Cla015959Cucurbita maxima (Rimu)cmawmB503
Cla015959Cucurbita maxima (Rimu)cmawmB586
Cla015959Cucurbita maxima (Rimu)cmawmB842
Cla015959Cucurbita moschata (Rifu)cmowmB109
Cla015959Cucurbita moschata (Rifu)cmowmB496
Cla015959Melon (DHL92) v3.5.1mewmB118
Cla015959Watermelon (Charleston Gray)wcgwmB162
Cla015959Watermelon (Charleston Gray)wcgwmB421
Cla015959Cucumber (Chinese Long) v2cuwmB149
Cla015959Cucurbita pepo (Zucchini)cpewmB268
Cla015959Cucurbita pepo (Zucchini)cpewmB500
Cla015959Cucurbita pepo (Zucchini)cpewmB665
Cla015959Cucurbita pepo (Zucchini)cpewmB748
Cla015959Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015959Bottle gourd (USVL1VR-Ls)lsiwmB492
Cla015959Cucumber (Gy14) v2cgybwmB141
Cla015959Cucumber (Gy14) v2cgybwmB142
Cla015959Melon (DHL92) v3.6.1medwmB323
Cla015959Melon (DHL92) v3.6.1medwmB579
Cla015959Silver-seed gourdcarwmB0198
Cla015959Silver-seed gourdcarwmB0657
Cla015959Silver-seed gourdcarwmB0812
Cla015959Silver-seed gourdcarwmB0895
Cla015959Cucumber (Chinese Long) v3cucwmB160
Cla015959Cucumber (Chinese Long) v3cucwmB164