Cla015865 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015865
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein
Location	Chr2 : 4237014 .. 4237226 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTACCAAAGGGATACTTTACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTATCATACTTGAACCAGCCGTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGCCATCACAATTCCTTGCAGTGAAAACTATTTCCTTGATCTCACTCGGAGTTGGAATGATTCATGA

mRNA sequence

AATGTACCAAAGGGATACTTTACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTATCATACTTGAACCAGCCGTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGCCATCACAATTCCTTGCAGTGAAAACTATTTCCTTGATCTCACTCGGAGTTGGAATGATTCATGA

Coding sequence (CDS)

AATGTACCAAAGGGATACTTTACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTATCATACTTGAACCAGCCGTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGCCATCACAATTCCTTGCAGTGAAAACTATTTCCTTGATCTCACTCGGAGTTGGAATGATTCATGA

Protein sequence

NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYFLDLTRSWNDS

Homology

[Close]

BLAST of Cla015865 vs. Swiss-Prot
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-21
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 1  NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
          + PKGY  VYVGE + KRFVIP+SYLNQPSFQDLLSQAEEEFGY+HPMG +TIPCSE+ F
Sbjct: 16 DAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVF 75

Query: 61 LDLTRSWN 69
            +T   N
Sbjct: 76 QCITSCLN 82

[Close]

BLAST of Cla015865 vs. Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-21
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 2  VPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYFL 61
          VPKGY  VYVG+ + +RF+IP+SYLNQPSFQDLL+QAEEEFGY+HPMG +TIPC E+ FL
Sbjct: 25 VPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFL 84

Query: 62 DLTRSWND 70
           +T   ND
Sbjct: 85 TVTSHLND 91

[Close]

BLAST of Cla015865 vs. Swiss-Prot
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-20
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 1  NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
          + PKGY  VYVGE + KRFVIP+SY+NQPSFQDLL+QAEEEFGY+HPMG +TIPCSE  F
Sbjct: 16 DAPKGYLAVYVGE-KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVF 75

Query: 61 LDLT 65
            +T
Sbjct: 76 QRIT 78

[Close]

BLAST of Cla015865 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-20
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 3  PKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYFLD 62
          PKG+  VYVGE QKKR+++PLSYLNQPSFQ LLS++EEEFG++HPMG +TIPC E+ F++
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 63 LT 65
          +T
Sbjct: 85 VT 86

[Close]

BLAST of Cla015865 vs. Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1  NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
          +VPKGY  VYVG+ + +RF IP+SYLN+PSFQ+LLSQAEEEFGY+HPMG +TIPC E  F
Sbjct: 25 DVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 84

Query: 61 LDLTRSWND 70
          L++T   N+
Sbjct: 85 LNVTAHLNE 92

[Close]

BLAST of Cla015865 vs. TrEMBL
Match: A0A0A0K4J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008980 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC+E YF
Sbjct: 31  DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCNEAYF 90

Query: 61  LDLTRSWNDS 71
           LDLTRS NDS
Sbjct: 91  LDLTRSLNDS 100

[Close]

BLAST of Cla015865 vs. TrEMBL
Match: A0A0A0K0H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008960 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC+E YF
Sbjct: 33  DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCNEVYF 92

Query: 61  LDLTRSWNDS 71
           LDLTRS NDS
Sbjct: 93  LDLTRSLNDS 102

[Close]

BLAST of Cla015865 vs. TrEMBL
Match: A0A0A0K5T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009020 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.4e-27
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYFTVYVGE  KKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC E+ F
Sbjct: 31  DVPKGYFTVYVGEEHKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCHEDEF 90

Query: 61  LDLTRSWNDS 71
           LDLT+S N+S
Sbjct: 91  LDLTQSLNES 100

[Close]

BLAST of Cla015865 vs. TrEMBL
Match: A0A0A0K160_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008990 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYFTVYVGE QKKRFVIPLSYLNQPSFQDLLSQ+EEEFGYNHPMG ITIPCSE+ F
Sbjct: 31  DVPKGYFTVYVGEEQKKRFVIPLSYLNQPSFQDLLSQSEEEFGYNHPMGGITIPCSEDCF 90

Query: 61  LDLTRSWNDS 71
           LD+T   N+S
Sbjct: 91  LDVTERLNES 100

[Close]

BLAST of Cla015865 vs. TrEMBL
Match: A0A0A0K2F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009000 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1  NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
          +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC+E YF
Sbjct: 33 DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCNEAYF 92

Query: 61 LDLTR 66
          LDLTR
Sbjct: 93 LDLTR 97

[Close]

BLAST of Cla015865 vs. NCBI nr
Match: gi|778722823|ref|XP_011658575.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC+E YF
Sbjct: 31  DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCNEAYF 90

Query: 61  LDLTRSWNDS 71
           LDLTRS NDS
Sbjct: 91  LDLTRSLNDS 100

[Close]

BLAST of Cla015865 vs. NCBI nr
Match: gi|778722827|ref|XP_011658577.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC+E YF
Sbjct: 33  DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCNEAYF 92

Query: 61  LDLTRSWNDS 71
           LDLTRS NDS
Sbjct: 93  LDLTRSLNDS 102

[Close]

BLAST of Cla015865 vs. NCBI nr
Match: gi|778722816|ref|XP_011658573.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC+E YF
Sbjct: 33  DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCNEVYF 92

Query: 61  LDLTRSWNDS 71
           LDLTRS NDS
Sbjct: 93  LDLTRSLNDS 102

[Close]

BLAST of Cla015865 vs. NCBI nr
Match: gi|659094352|ref|XP_008448014.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-27
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYF VY+GE QKKRFVIPLSYLNQPSFQDLLSQAEE+FGYNHPMG ITIPCSE+YF
Sbjct: 31  DVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEKFGYNHPMGGITIPCSEDYF 90

Query: 61  LDLTRSWNDS 71
           LD+T   NDS
Sbjct: 91  LDVTERLNDS 100

[Close]

BLAST of Cla015865 vs. NCBI nr
Match: gi|778722830|ref|XP_004144905.2| (PREDICTED: auxin-induced protein X10A-like [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 1   NVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYF 60
           +VPKGYFTVYVGE  KKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMG ITIPC E+ F
Sbjct: 31  DVPKGYFTVYVGEEHKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCHEDEF 90

Query: 61  LDLTRSWNDS 71
           LDLT+S N+S
Sbjct: 91  LDLTQSLNES 100

The following BLAST results are available for this feature:

BLAST of Cla015865 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AX15A_SOYBN	2.6e-21	72.06	Auxin-induced protein 15A OS=Glycine max PE=2 SV=1	[more]
AX10A_SOYBN	2.6e-21	69.12	Auxin-induced protein X10A OS=Glycine max PE=2 SV=1	[more]
AXX15_SOYBN	1.3e-20	71.88	Auxin-induced protein X15 OS=Glycine max PE=2 SV=1	[more]
SAU23_ARATH	2.2e-20	67.74	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
A10A5_SOYBN	2.9e-20	65.22	Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1	[more]

BLAST of Cla015865 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4J0_CUCSA	1.5e-28	88.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008980 PE=4 SV=1	[more]
A0A0A0K0H6_CUCSA	2.0e-28	88.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008960 PE=4 SV=1	[more]
A0A0A0K5T8_CUCSA	8.4e-27	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009020 PE=4 SV=1	[more]
A0A0A0K160_CUCSA	1.4e-26	84.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008990 PE=4 SV=1	[more]
A0A0A0K2F5_CUCSA	1.9e-26	89.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009000 PE=4 SV=1	[more]

BLAST of Cla015865 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722823\|ref\|XP_011658575.1\|	2.2e-28	88.57	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778722827\|ref\|XP_011658577.1\|	2.2e-28	88.57	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778722816\|ref\|XP_011658573.1\|	2.9e-28	88.57	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659094352\|ref\|XP_008448014.1\|	4.1e-27	84.29	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778722830\|ref\|XP_004144905.2\|	1.2e-26	85.71	PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015865	Cla015865.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 2..64 score: 2.8
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 1..70 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015865	CmoCh19G007230	Cucurbita moschata (Rifu)	cmowmB496

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015865	Wax gourd	wgowmB272
Cla015865	Wax gourd	wgowmB343
Cla015865	Wax gourd	wgowmB383
Cla015865	Watermelon (97103) v1	wmwmB073
Cla015865	Watermelon (97103) v1	wmwmB160
Cla015865	Cucumber (Gy14) v1	cgywmB296
Cla015865	Cucumber (Gy14) v1	cgywmB321
Cla015865	Cucumber (Gy14) v1	cgywmB688
Cla015865	Cucurbita maxima (Rimu)	cmawmB121
Cla015865	Cucurbita maxima (Rimu)	cmawmB503
Cla015865	Cucurbita maxima (Rimu)	cmawmB526
Cla015865	Cucurbita maxima (Rimu)	cmawmB586
Cla015865	Cucurbita moschata (Rifu)	cmowmB117
Cla015865	Cucurbita moschata (Rifu)	cmowmB158
Cla015865	Cucurbita moschata (Rifu)	cmowmB516
Cla015865	Cucurbita moschata (Rifu)	cmowmB580
Cla015865	Melon (DHL92) v3.5.1	mewmB239
Cla015865	Melon (DHL92) v3.5.1	mewmB327
Cla015865	Watermelon (Charleston Gray)	wcgwmB101
Cla015865	Watermelon (Charleston Gray)	wcgwmB198
Cla015865	Watermelon (Charleston Gray)	wcgwmB422
Cla015865	Cucumber (Chinese Long) v2	cuwmB149
Cla015865	Cucumber (Chinese Long) v2	cuwmB153
Cla015865	Cucumber (Chinese Long) v2	cuwmB604
Cla015865	Cucurbita pepo (Zucchini)	cpewmB115
Cla015865	Cucurbita pepo (Zucchini)	cpewmB268
Cla015865	Cucurbita pepo (Zucchini)	cpewmB304
Cla015865	Cucurbita pepo (Zucchini)	cpewmB674
Cla015865	Cucurbita pepo (Zucchini)	cpewmB748
Cla015865	Cucurbita pepo (Zucchini)	cpewmB808
Cla015865	Bottle gourd (USVL1VR-Ls)	lsiwmB079
Cla015865	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015865	Cucumber (Gy14) v2	cgybwmB141
Cla015865	Cucumber (Gy14) v2	cgybwmB144
Cla015865	Cucumber (Gy14) v2	cgybwmB566
Cla015865	Melon (DHL92) v3.6.1	medwmB110
Cla015865	Melon (DHL92) v3.6.1	medwmB231
Cla015865	Melon (DHL92) v3.6.1	medwmB324
Cla015865	Silver-seed gourd	carwmB0137
Cla015865	Silver-seed gourd	carwmB0305
Cla015865	Silver-seed gourd	carwmB0985
Cla015865	Cucumber (Chinese Long) v3	cucwmB160
Cla015865	Cucumber (Chinese Long) v3	cucwmB163
Cla015865	Cucumber (Chinese Long) v3	cucwmB634
Cla015865	Watermelon (97103) v2	wmwmbB315
Cla015865	Watermelon (97103) v2	wmwmbB317
Cla015865	Watermelon (97103) v2	wmwmbB349