Cla013544 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013544
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein
Location	Chr2 : 28185970 .. 28187100 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGAAAACTCAGGCGTTCACCGTCGCCATTGCCATTCCGGCGACGTAATGCCGATTATACCACCGCCACCGATTACGATGCTTCTCCATCTCAATCTCTCTATGCATCGAACGAAGACGACTATGACCCCTCTGAATCTGTTAACTCCCACCCCACTGACCCCAAATCAAAATCCCTAGAAATTAAGCCCTCTGATTTAAGAACCGCCGCAGAATCCGCCTCCAAAAACAGCTTAGCGTATTTACAGACTCCAAACGCCGCCCAAACTGTATTTCCATACATCAACGTTGCACCGTTGCCGATTTTTCACGGCAGCGCCGATGAGTGTCCGGTGATACATTTAAGCAGATTCGCCAAAGTCTGCCGTGCGAACAACGCAACCTCCATCGACATGATGATGAGAATCTTCCCGGTGACGTTAGAGGGTGAGGCAGCGCTTTGGTACGACTTGAACATCGAGCCCTACCCTCCAATTTCTTGGGAAGAATTGAAGTCTTGTTTCTTGGATGCTTTCAATAAAATTGAATTGACTGACCAGTTGCGATCGGAGCTTATGACGATAAAACAACGGGAAGAGGAGAGTGTACGTTTGTATTTTCTGAGGTTGCAGTTGATTTTGAAGAAATGGCCACCGGGTAATTCACTTTCCGATGGCTTGTTGAAGACGATTTTTGTTGACGGATTGAGGGAAGAGTTCAAGGAATGGATGATTCTACAGAAACCGAGTTCATTGAACGAGGCATTGAGACTTGCATTTGGGTTTGAACAAGTAAGGACCGTCAGTACATCTGGCAAAAGGGGGTTTCTTCGGTGTGGGTTTTGTGAGGGGCCGCACGAGGAATTGGTTTGTGAGGTTAGGGAGAGAATGAGACAGTTGTGGAAGAGTAGGGAAAAGAAGAATACGGTTGACGTGGTGCAGAGTGACGGCCGTGAAGCGGCAATGGCAACGGCGGAGCTTATGCGATCGTCTTCGGCAATTAGTAGAAACGAATCGGAGGTTGAAAATGATGGCGGGGAGATGGTGGGTTTGAAGAAGAAGAGTCAGTGTCAATGTTGGAAGCATCAGTGTGGGATGAAGAAATTGGATCGAAACCTTAGCATGGTATCAAAAAATTCTAAAGGCTGA

mRNA sequence

ATGGCGCGAAAACTCAGGCGTTCACCGTCGCCATTGCCATTCCGGCGACGTAATGCCGATTATACCACCGCCACCGATTACGATGCTTCTCCATCTCAATCTCTCTATGCATCGAACGAAGACGACTATGACCCCTCTGAATCTGTTAACTCCCACCCCACTGACCCCAAATCAAAATCCCTAGAAATTAAGCCCTCTGATTTAAGAACCGCCGCAGAATCCGCCTCCAAAAACAGCTTAGCGTATTTACAGACTCCAAACGCCGCCCAAACTGTATTTCCATACATCAACGTTGCACCGTTGCCGATTTTTCACGGCAGCGCCGATGAGTGTCCGGTGATACATTTAAGCAGATTCGCCAAAGTCTGCCGTGCGAACAACGCAACCTCCATCGACATGATGATGAGAATCTTCCCGGTGACGTTAGAGGGTGAGGCAGCGCTTTGGTACGACTTGAACATCGAGCCCTACCCTCCAATTTCTTGGGAAGAATTGAAGTCTTGTTTCTTGGATGCTTTCAATAAAATTGAATTGACTGACCAGTTGCGATCGGAGCTTATGACGATAAAACAACGGGAAGAGGAGAGTGTACGTTTGTATTTTCTGAGGTTGCAGTTGATTTTGAAGAAATGGCCACCGGGTAATTCACTTTCCGATGGCTTGTTGAAGACGATTTTTGTTGACGGATTGAGGGAAGAGTTCAAGGAATGGATGATTCTACAGAAACCGAGTTCATTGAACGAGGCATTGAGACTTGCATTTGGGTTTGAACAAGTAAGGACCGTCAGTACATCTGGCAAAAGGGGGTTTCTTCGGTGTGGGTTTTGTGAGGGGCCGCACGAGGAATTGGTTTGTGAGGTTAGGGAGAGAATGAGACAGTTGTGGAAGAGTAGGGAAAAGAAGAATACGGTTGACGTGGTGCAGAGTGACGGCCGTGAAGCGGCAATGGCAACGGCGGAGCTTATGCGATCGTCTTCGGCAATTAGTAGAAACGAATCGGAGGTTGAAAATGATGGCGGGGAGATGGTGGGTTTGAAGAAGAAGAGTCAGTGTCAATGTTGGAAGCATCAGTGTGGGATGAAGAAATTGGATCGAAACCTTAGCATGGTATCAAAAAATTCTAAAGGCTGA

Coding sequence (CDS)

ATGGCGCGAAAACTCAGGCGTTCACCGTCGCCATTGCCATTCCGGCGACGTAATGCCGATTATACCACCGCCACCGATTACGATGCTTCTCCATCTCAATCTCTCTATGCATCGAACGAAGACGACTATGACCCCTCTGAATCTGTTAACTCCCACCCCACTGACCCCAAATCAAAATCCCTAGAAATTAAGCCCTCTGATTTAAGAACCGCCGCAGAATCCGCCTCCAAAAACAGCTTAGCGTATTTACAGACTCCAAACGCCGCCCAAACTGTATTTCCATACATCAACGTTGCACCGTTGCCGATTTTTCACGGCAGCGCCGATGAGTGTCCGGTGATACATTTAAGCAGATTCGCCAAAGTCTGCCGTGCGAACAACGCAACCTCCATCGACATGATGATGAGAATCTTCCCGGTGACGTTAGAGGGTGAGGCAGCGCTTTGGTACGACTTGAACATCGAGCCCTACCCTCCAATTTCTTGGGAAGAATTGAAGTCTTGTTTCTTGGATGCTTTCAATAAAATTGAATTGACTGACCAGTTGCGATCGGAGCTTATGACGATAAAACAACGGGAAGAGGAGAGTGTACGTTTGTATTTTCTGAGGTTGCAGTTGATTTTGAAGAAATGGCCACCGGGTAATTCACTTTCCGATGGCTTGTTGAAGACGATTTTTGTTGACGGATTGAGGGAAGAGTTCAAGGAATGGATGATTCTACAGAAACCGAGTTCATTGAACGAGGCATTGAGACTTGCATTTGGGTTTGAACAAGTAAGGACCGTCAGTACATCTGGCAAAAGGGGGTTTCTTCGGTGTGGGTTTTGTGAGGGGCCGCACGAGGAATTGGTTTGTGAGGTTAGGGAGAGAATGAGACAGTTGTGGAAGAGTAGGGAAAAGAAGAATACGGTTGACGTGGTGCAGAGTGACGGCCGTGAAGCGGCAATGGCAACGGCGGAGCTTATGCGATCGTCTTCGGCAATTAGTAGAAACGAATCGGAGGTTGAAAATGATGGCGGGGAGATGGTGGGTTTGAAGAAGAAGAGTCAGTGTCAATGTTGGAAGCATCAGTGTGGGATGAAGAAATTGGATCGAAACCTTAGCATGGTATCAAAAAATTCTAAAGGCTGA

Protein sequence

MARKLRRSPSPLPFRRRNADYTTATDYDASPSQSLYASNEDDYDPSESVNSHPTDPKSKSLEIKPSDLRTAAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFAKVCRANNATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTDQLRSELMTIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMILQKPSSLNEALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREKKNTVDVVQSDGREAAMATAELMRSSSAISRNESEVENDGGEMVGLKKKSQCQCWKHQCGMKKLDRNLSMVSKNSKG

Homology

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BLAST of Cla013544 vs. TrEMBL
Match: W9R9S0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004813 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 4.0e-91
Identity = 196/394 (49.75%), Postives = 256/394 (64.97%), Query Frame = 1


Query: 6   RRSPSPLPFRRR-NADYTTATDYDASPSQSL-YASNEDDYDPSESVNSHPTDPKSKSLEI 65
           RR+P+P  +    + DYTT      SP+ S  +   E+D D ++  +  PTD  +  L  
Sbjct: 19  RRTPTPQDYSSTYDDDYTTVV---RSPNDSTEFDQPENDDDDNDDASDAPTDSATNPLSD 78

Query: 66  KPSDL------RTAAESASKNSLAYLQTPNAAQTVF-PYINVAPLPIFHGSADECPVIHL 125
           + S +      R  + SAS + + +L     +QT +  Y+N+A  PIF G ++ECP  HL
Sbjct: 79  QFSSVSERINARKKSCSASHSPILHLPQQPVSQTGYNSYMNIAQFPIFRGGSEECPFAHL 138

Query: 126 SRFAKVCRANNATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKI 185
           SRFAKVCRANN +SIDMMM+IFPVTLE EAALWYDLN+EPY  +SWEE+KS F  A+ KI
Sbjct: 139 SRFAKVCRANNVSSIDMMMKIFPVTLEDEAALWYDLNVEPYEELSWEEIKSSFYHAYGKI 198

Query: 186 ELTDQLRSELMTIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKE 245
           ELT+QLRS+LMTI Q + ESVR YFLRLQ ILKKWP  + LSD LLK +FVDGLR +F+E
Sbjct: 199 ELTEQLRSQLMTINQGDAESVRSYFLRLQWILKKWPE-HGLSDDLLKGVFVDGLRGDFQE 258

Query: 246 WMILQKPSSLNEALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLW- 305
           WM  QKP SLN+ALRLAF FEQV+++    +   ++CGFC G HEE  CEVRERMR+LW 
Sbjct: 259 WMAPQKPGSLNKALRLAFCFEQVKSIRNVRRNASVKCGFCGGLHEERGCEVRERMRELWL 318

Query: 306 ---------KSREKKNTVDV---VQSDGREAAMATAELMRSSSAISRNESEVENDG---- 365
                    K   ++N ++    V+  GR  +MAT+   RS+  + +N+ +VE DG    
Sbjct: 319 KSNKDDGLGKGMLERNLIEKSEGVKELGRSVSMATS---RSTCVVGKND-QVEEDGKEEE 378

Query: 366 GEMVGLKKKSQCQCWKHQCGMKKLDRNLSMVSKN 374
            E+   KK+SQCQC KHQC  K ++RN S VS N
Sbjct: 379 DELGSKKKRSQCQCGKHQCWKKNIERNNSTVSGN 404

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BLAST of Cla013544 vs. TrEMBL
Match: B9RWN5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1022950 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.7e-89
Identity = 185/378 (48.94%), Postives = 248/378 (65.61%), Query Frame = 1


Query: 1   MARKLRRSPSPLPFRRRNADYTTATDYDASPSQSLYASNEDDYDPSESVNSHPTDPKSKS 60
           M RK + S   L F  R+ DY+ +T    SPSQS Y SN+DD +  +     P   +S +
Sbjct: 1   MTRKAKNSRKSLQFSSRH-DYSEST----SPSQSPYDSNDDDDEIEDDDEEQPIISESVT 60

Query: 61  LEIKPSDLRTAAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFA 120
             +    L +++ S S+        PN +     YINVAPLP+FHG+++ECP+ HLSRF 
Sbjct: 61  NSLNADQLSSSSYSNSQ--------PNNS-----YINVAPLPVFHGNSNECPIAHLSRFV 120

Query: 121 KVCRANNATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTD 180
           KVCRANNA+S DMMMRIFPVTLE EAALWYDLNI+PYP +SW+E+   FL+A+ +I+L D
Sbjct: 121 KVCRANNASSTDMMMRIFPVTLENEAALWYDLNIQPYPSLSWDEIMLSFLEAYQRIKLVD 180

Query: 181 QLRSELMTIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMIL 240
           QLRS+LM + Q  +ESVR YF+RLQ ILK+W P + LSD +LK IF+DGL   FK+W+I 
Sbjct: 181 QLRSDLMMLNQGSDESVRSYFMRLQWILKRW-PDHGLSDNMLKWIFIDGLMGNFKDWIIP 240

Query: 241 QKPSSLNEALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREK 300
            KP+SLNEALRLAF FEQV+++  + K+  ++CGFCEG HEE  C VRE+MR+L+++ +K
Sbjct: 241 HKPNSLNEALRLAFSFEQVKSIRGT-KQKVVKCGFCEGSHEENCCVVREKMRELFRNSKK 300

Query: 301 KNTVDVVQSDGREAAMATAELMRSSSAISRNESEVENDGGE--MVGLKK--KSQCQCWKH 360
           K  +    S+  EA    AE           E +V +D  E  M+   K  KS CQC KH
Sbjct: 301 KMMIPKEASERSEAGNEMAENKDGKEGEEEEEVDVGDDKEEKRMLSSSKTGKSPCQCSKH 358

Query: 361 QCGMKKLDRNLSMVSKNS 375
            C MKK +R+ S+ ++NS
Sbjct: 361 HCWMKKFERSNSVTTRNS 358

[Close]

BLAST of Cla013544 vs. TrEMBL
Match: A5C7E6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007470 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.1e-87
Identity = 190/370 (51.35%), Postives = 242/370 (65.41%), Query Frame = 1


Query: 20  DYTTATDYDASPSQSLYASNEDDYDPSESVNSHPTDPKSKSLEIKPSD------LRTAAE 79
           DYT     + SPSQS Y  +E++ D      S  TD +S S    P D      L +  +
Sbjct: 161 DYT-----EQSPSQSPYEFDEEEEDEQ----SXYTDNESASGTNAPGDQFSLPALESIPK 220

Query: 80  SASKNSLAYLQTPNAAQTVFP---YINVAPLPIFHGSADECPVIHLSRFAKVCRANNATS 139
             S    + L + + +   F    YIN+APLPIF GS+DECPV HLSRF KVCRANN +S
Sbjct: 221 GKSFRPSSSLNSSSNSLNPFXQSSYINIAPLPIFRGSSDECPVTHLSRFTKVCRANNVSS 280

Query: 140 IDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTDQLRSELMTIK 199
           ++M+MRIFPVTL+GEAALWYDLNIEPY  +SWEE+KS FL A+++  LTD+LRSELM I 
Sbjct: 281 VEMIMRIFPVTLDGEAALWYDLNIEPYSSLSWEEIKSSFLQAYHRXGLTDELRSELMMIN 340

Query: 200 QREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMILQKPSSLNEAL 259
           Q  EESVR YFLRLQ ILK+W P + L DGLL+ IF+DGLR++F++W+I QKPSSLNEAL
Sbjct: 341 QGTEESVRSYFLRLQWILKRW-PDHGLPDGLLEGIFIDGLRKDFQDWIIPQKPSSLNEAL 400

Query: 260 RLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREKKNTVD----- 319
           RLAF +E+V+++    ++    CGFC G H+E  CE+RERMR LW  + KK T D     
Sbjct: 401 RLAFAWEKVQSIRGGREK---ECGFCSGGHDEEGCEIRERMRXLW-VKSKKQTRDYSGRI 460

Query: 320 VVQSDGREAAMATAELMRSSSAISRNESEVENDGGEMVGLKKKSQCQCWKHQCGMKKLDR 375
           V   DG +       +   S  + +NE E E      +G KKKSQCQC KHQC  KKL+R
Sbjct: 461 VNDEDGEKEFERRVSVGGESRBVGKNEEEGEEG---XMGWKKKSQCQCGKHQCWKKKLER 513

[Close]

BLAST of Cla013544 vs. TrEMBL
Match: A0A061DJI4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_001704 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.8e-87
Identity = 185/370 (50.00%), Postives = 238/370 (64.32%), Query Frame = 1


Query: 20  DYTTATDYDASPSQSL-----YASNEDDYDP-------SESVNSHPTDPKSKSLEIKPSD 79
           +Y   T    SP +S         NE+DYD        SES+ + P  PK+    ++ + 
Sbjct: 41  NYVDNTSLSHSPDESNGDDLEQPRNENDYDDFDASDFQSESMTNAPNAPKTL---LRGNG 100

Query: 80  LRTAAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFAKVCRANN 139
           L  AA   S ++ A     N  +    YIN+APLPIF GS  +CPV HLSRFAKVCRANN
Sbjct: 101 LSAAASLNSVSNSAIWSRSNLIEAT-SYINIAPLPIFQGSPSDCPVTHLSRFAKVCRANN 160

Query: 140 ATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTDQLRSELM 199
            +S+DMMMRIFPVTLE EA LWYDLNIEPYP + WEE+KS FL A++K ++T+QLR ELM
Sbjct: 161 VSSVDMMMRIFPVTLENEAGLWYDLNIEPYPSLRWEEIKSSFLQAYHKTQVTEQLRHELM 220

Query: 200 TIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMILQKPSSLN 259
            I Q  EE VR YFLRLQ  L++W P + + + LLK IFVDGLRE+F++W++ QKP SL 
Sbjct: 221 MINQGSEERVRSYFLRLQWSLQRW-PDHGIPENLLKEIFVDGLREDFQDWIVPQKPDSLV 280

Query: 260 EALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREKKNTVDVV 319
           EALRLA  FEQ++++  S K+  L+C FCEG HEE  C+VRERM++LW+  + K  +D  
Sbjct: 281 EALRLAIAFEQLKSIKISRKKD-LKCDFCEGSHEERNCQVRERMKELWRKTKDKEWMDSS 340

Query: 320 Q-SDGREAAMATAELMRSSSAISRNESEVENDGGEMVG--LKKKSQCQCWKHQCGMKKLD 375
           + +   EA   +AE     SA  R E E   +G  + G   KKKS CQC KHQC  K+LD
Sbjct: 341 EKNQSNEAVNESAE----GSAEDRIEEENVVEGEMLSGRKQKKKSPCQCCKHQCWKKQLD 400

[Close]

BLAST of Cla013544 vs. TrEMBL
Match: K7KXT1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G277800 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 8.7e-62
Identity = 158/369 (42.82%), Postives = 209/369 (56.64%), Query Frame = 1


Query: 21  YTTATDYDASP--SQSLYASNEDDYDP---------------SESVNSHPTDPK--SKSL 80
           Y    D DAS    +  Y S+E++ +P               SESV+++ T P     S 
Sbjct: 42  YNVDDDADASEYSQEDEYESDEEEEEPEQDIDEDDNNVNGISSESVSNNSTPPNVPETST 101

Query: 81  EIKPSDLRTAAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFAK 140
            I  SDLR  + ++S +                Y+ +APLPIF G + E PV HLSRF K
Sbjct: 102 SISASDLRNPSSNSSSS----------------YVKIAPLPIFRGMSSESPVTHLSRFNK 161

Query: 141 VCRANNATSIDMMMRIFPVTLEGEAALWYDLNIEP-YPPISWEELKSCFLDAFNKIELTD 200
           VCRANNA+S+DM MRIFPVTLE EAALWYDLN+EP Y  +SWEE K  FL A+  +E  +
Sbjct: 162 VCRANNASSVDMQMRIFPVTLEDEAALWYDLNVEPYYGSLSWEETKLSFLQAYYDVEPVE 221

Query: 201 QLRSELMTIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMIL 260
           +LRS+L+ I+Q + ESVR YFLRLQ ILK+WP  + L + +LK +FVDGLREEF+EW+++
Sbjct: 222 ELRSKLVGIRQDQRESVRSYFLRLQWILKRWPE-HGLGEDVLKGVFVDGLREEFREWVLM 281

Query: 261 QKPSSLNEALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREK 320
           QKP SLN+AL+LAF FE+V  V   GK G        GP     CEVR+ +         
Sbjct: 282 QKPGSLNDALKLAFEFEKVWRV--RGKEGV-------GP----TCEVRDVL--------- 341

Query: 321 KNTVDVVQSDGREAAMATAELMRSSSAISRNESEVENDGGEMVGLKKKSQCQCWKHQCGM 370
                     G++  + +  +   SS   R E    ++G  +VG  KK QC    H+CG 
Sbjct: 342 ----------GKDLIVGSCSVGEISSGQERVEDAKGSEG--LVGSVKKKQC----HKCGK 355

[Close]

BLAST of Cla013544 vs. NCBI nr
Match: gi|703109765|ref|XP_010099386.1| (hypothetical protein L484_004813 [Morus notabilis])

HSP 1 Score: 343.2 bits (879), Expect = 5.8e-91
Identity = 196/394 (49.75%), Postives = 256/394 (64.97%), Query Frame = 1


Query: 6   RRSPSPLPFRRR-NADYTTATDYDASPSQSL-YASNEDDYDPSESVNSHPTDPKSKSLEI 65
           RR+P+P  +    + DYTT      SP+ S  +   E+D D ++  +  PTD  +  L  
Sbjct: 19  RRTPTPQDYSSTYDDDYTTVV---RSPNDSTEFDQPENDDDDNDDASDAPTDSATNPLSD 78

Query: 66  KPSDL------RTAAESASKNSLAYLQTPNAAQTVF-PYINVAPLPIFHGSADECPVIHL 125
           + S +      R  + SAS + + +L     +QT +  Y+N+A  PIF G ++ECP  HL
Sbjct: 79  QFSSVSERINARKKSCSASHSPILHLPQQPVSQTGYNSYMNIAQFPIFRGGSEECPFAHL 138

Query: 126 SRFAKVCRANNATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKI 185
           SRFAKVCRANN +SIDMMM+IFPVTLE EAALWYDLN+EPY  +SWEE+KS F  A+ KI
Sbjct: 139 SRFAKVCRANNVSSIDMMMKIFPVTLEDEAALWYDLNVEPYEELSWEEIKSSFYHAYGKI 198

Query: 186 ELTDQLRSELMTIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKE 245
           ELT+QLRS+LMTI Q + ESVR YFLRLQ ILKKWP  + LSD LLK +FVDGLR +F+E
Sbjct: 199 ELTEQLRSQLMTINQGDAESVRSYFLRLQWILKKWPE-HGLSDDLLKGVFVDGLRGDFQE 258

Query: 246 WMILQKPSSLNEALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLW- 305
           WM  QKP SLN+ALRLAF FEQV+++    +   ++CGFC G HEE  CEVRERMR+LW 
Sbjct: 259 WMAPQKPGSLNKALRLAFCFEQVKSIRNVRRNASVKCGFCGGLHEERGCEVRERMRELWL 318

Query: 306 ---------KSREKKNTVDV---VQSDGREAAMATAELMRSSSAISRNESEVENDG---- 365
                    K   ++N ++    V+  GR  +MAT+   RS+  + +N+ +VE DG    
Sbjct: 319 KSNKDDGLGKGMLERNLIEKSEGVKELGRSVSMATS---RSTCVVGKND-QVEEDGKEEE 378

Query: 366 GEMVGLKKKSQCQCWKHQCGMKKLDRNLSMVSKN 374
            E+   KK+SQCQC KHQC  K ++RN S VS N
Sbjct: 379 DELGSKKKRSQCQCGKHQCWKKNIERNNSTVSGN 404

[Close]

BLAST of Cla013544 vs. NCBI nr
Match: gi|223542750|gb|EEF44287.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 337.8 bits (865), Expect = 2.4e-89
Identity = 185/378 (48.94%), Postives = 248/378 (65.61%), Query Frame = 1


Query: 1   MARKLRRSPSPLPFRRRNADYTTATDYDASPSQSLYASNEDDYDPSESVNSHPTDPKSKS 60
           M RK + S   L F  R+ DY+ +T    SPSQS Y SN+DD +  +     P   +S +
Sbjct: 1   MTRKAKNSRKSLQFSSRH-DYSEST----SPSQSPYDSNDDDDEIEDDDEEQPIISESVT 60

Query: 61  LEIKPSDLRTAAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFA 120
             +    L +++ S S+        PN +     YINVAPLP+FHG+++ECP+ HLSRF 
Sbjct: 61  NSLNADQLSSSSYSNSQ--------PNNS-----YINVAPLPVFHGNSNECPIAHLSRFV 120

Query: 121 KVCRANNATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTD 180
           KVCRANNA+S DMMMRIFPVTLE EAALWYDLNI+PYP +SW+E+   FL+A+ +I+L D
Sbjct: 121 KVCRANNASSTDMMMRIFPVTLENEAALWYDLNIQPYPSLSWDEIMLSFLEAYQRIKLVD 180

Query: 181 QLRSELMTIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMIL 240
           QLRS+LM + Q  +ESVR YF+RLQ ILK+W P + LSD +LK IF+DGL   FK+W+I 
Sbjct: 181 QLRSDLMMLNQGSDESVRSYFMRLQWILKRW-PDHGLSDNMLKWIFIDGLMGNFKDWIIP 240

Query: 241 QKPSSLNEALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREK 300
            KP+SLNEALRLAF FEQV+++  + K+  ++CGFCEG HEE  C VRE+MR+L+++ +K
Sbjct: 241 HKPNSLNEALRLAFSFEQVKSIRGT-KQKVVKCGFCEGSHEENCCVVREKMRELFRNSKK 300

Query: 301 KNTVDVVQSDGREAAMATAELMRSSSAISRNESEVENDGGE--MVGLKK--KSQCQCWKH 360
           K  +    S+  EA    AE           E +V +D  E  M+   K  KS CQC KH
Sbjct: 301 KMMIPKEASERSEAGNEMAENKDGKEGEEEEEVDVGDDKEEKRMLSSSKTGKSPCQCSKH 358

Query: 361 QCGMKKLDRNLSMVSKNS 375
            C MKK +R+ S+ ++NS
Sbjct: 361 HCWMKKFERSNSVTTRNS 358

[Close]

BLAST of Cla013544 vs. NCBI nr
Match: gi|147817046|emb|CAN62167.1| (hypothetical protein VITISV_007470 [Vitis vinifera])

HSP 1 Score: 332.4 bits (851), Expect = 1.0e-87
Identity = 190/370 (51.35%), Postives = 243/370 (65.68%), Query Frame = 1


Query: 20  DYTTATDYDASPSQSLYASNEDDYDPSESVNSHPTDPKSKSLEIKPSD------LRTAAE 79
           DYT     + SPSQS Y  +E++ D      S  TD +S S    P D      L +  +
Sbjct: 161 DYT-----EQSPSQSPYEFDEEEEDEQ----SXYTDNESASGTNAPGDQFSLPALESIPK 220

Query: 80  SASKNSLAYLQTPNAAQTVFP---YINVAPLPIFHGSADECPVIHLSRFAKVCRANNATS 139
             S    + L + + +   F    YIN+APLPIF GS+DECPV HLSRF KVCRANN +S
Sbjct: 221 GKSFRPSSSLNSSSNSLNPFXQSSYINIAPLPIFRGSSDECPVTHLSRFTKVCRANNVSS 280

Query: 140 IDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTDQLRSELMTIK 199
           ++M+MRIFPVTL+GEAALWYDLNIEPY  +SWEE+KS FL A++++ LTD+LRSELM I 
Sbjct: 281 VEMIMRIFPVTLDGEAALWYDLNIEPYSSLSWEEIKSSFLQAYHRJGLTDELRSELMMIN 340

Query: 200 QREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMILQKPSSLNEAL 259
           Q  EESVR YFLRLQ ILK+W P + L DGLL+ IF+DGLR++F++W+I QKPSSLNEAL
Sbjct: 341 QGTEESVRSYFLRLQWILKRW-PDHGLPDGLLEGIFIDGLRKDFQDWIIPQKPSSLNEAL 400

Query: 260 RLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREKKNTVD----- 319
           RLAF +E+V+++    ++    CGFC G H+E  CE+RERMR LW  + KK T D     
Sbjct: 401 RLAFAWEKVQSIRGGREK---ECGFCSGGHDEEGCEIRERMRXLW-VKSKKQTRDYSGRI 460

Query: 320 VVQSDGREAAMATAELMRSSSAISRNESEVENDGGEMVGLKKKSQCQCWKHQCGMKKLDR 375
           V   DG +       +   S  + +NE E E      +G KKKSQCQC KHQC  KKL+R
Sbjct: 461 VNDEDGEKEFERRVSVGGESRBVGKNEEEGEEG---XMGWKKKSQCQCGKHQCWKKKLER 513

[Close]

BLAST of Cla013544 vs. NCBI nr
Match: gi|590709920|ref|XP_007048687.1| (Uncharacterized protein TCM_001704 [Theobroma cacao])

HSP 1 Score: 328.9 bits (842), Expect = 1.1e-86
Identity = 185/370 (50.00%), Postives = 238/370 (64.32%), Query Frame = 1


Query: 20  DYTTATDYDASPSQSL-----YASNEDDYDP-------SESVNSHPTDPKSKSLEIKPSD 79
           +Y   T    SP +S         NE+DYD        SES+ + P  PK+    ++ + 
Sbjct: 41  NYVDNTSLSHSPDESNGDDLEQPRNENDYDDFDASDFQSESMTNAPNAPKTL---LRGNG 100

Query: 80  LRTAAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFAKVCRANN 139
           L  AA   S ++ A     N  +    YIN+APLPIF GS  +CPV HLSRFAKVCRANN
Sbjct: 101 LSAAASLNSVSNSAIWSRSNLIEAT-SYINIAPLPIFQGSPSDCPVTHLSRFAKVCRANN 160

Query: 140 ATSIDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTDQLRSELM 199
            +S+DMMMRIFPVTLE EA LWYDLNIEPYP + WEE+KS FL A++K ++T+QLR ELM
Sbjct: 161 VSSVDMMMRIFPVTLENEAGLWYDLNIEPYPSLRWEEIKSSFLQAYHKTQVTEQLRHELM 220

Query: 200 TIKQREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMILQKPSSLN 259
            I Q  EE VR YFLRLQ  L++W P + + + LLK IFVDGLRE+F++W++ QKP SL 
Sbjct: 221 MINQGSEERVRSYFLRLQWSLQRW-PDHGIPENLLKEIFVDGLREDFQDWIVPQKPDSLV 280

Query: 260 EALRLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREKKNTVDVV 319
           EALRLA  FEQ++++  S K+  L+C FCEG HEE  C+VRERM++LW+  + K  +D  
Sbjct: 281 EALRLAIAFEQLKSIKISRKKD-LKCDFCEGSHEERNCQVRERMKELWRKTKDKEWMDSS 340

Query: 320 Q-SDGREAAMATAELMRSSSAISRNESEVENDGGEMVG--LKKKSQCQCWKHQCGMKKLD 375
           + +   EA   +AE     SA  R E E   +G  + G   KKKS CQC KHQC  K+LD
Sbjct: 341 EKNQSNEAVNESAE----GSAEDRIEEENVVEGEMLSGRKQKKKSPCQCCKHQCWKKQLD 400

[Close]

BLAST of Cla013544 vs. NCBI nr
Match: gi|731408992|ref|XP_010657036.1| (PREDICTED: uncharacterized protein LOC104880826 [Vitis vinifera])

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 181/371 (48.79%), Postives = 226/371 (60.92%), Query Frame = 1


Query: 20  DYTTATDYDASPSQSLYASNEDDYDP--------SESVNSHPTDPKS-KSLEIKPSDLRT 79
           DYT     + SPSQS Y  +E++ D         S S  + P D  S  +LE  P   ++
Sbjct: 40  DYT-----EQSPSQSPYEFDEEEEDEQSVYTDNESASGTNAPGDQFSLPALESIPKG-KS 99

Query: 80  AAESASKNSLAYLQTPNAAQTVFPYINVAPLPIFHGSADECPVIHLSRFAKVCRANNATS 139
              S+S NS +    P    +   YIN+APLPIF GS+DECPV HLSRF KVCRANN +S
Sbjct: 100 FRPSSSLNSSSNSLNPFIQSS---YINIAPLPIFRGSSDECPVTHLSRFTKVCRANNVSS 159

Query: 140 IDMMMRIFPVTLEGEAALWYDLNIEPYPPISWEELKSCFLDAFNKIELTDQLRSELMTIK 199
           ++M+MRIFPVTL+GEAALW                          + LTD+LRSELM I 
Sbjct: 160 VEMIMRIFPVTLDGEAALW--------------------------LGLTDELRSELMMIN 219

Query: 200 QREEESVRLYFLRLQLILKKWPPGNSLSDGLLKTIFVDGLREEFKEWMILQKPSSLNEAL 259
           Q  EESVR YFLRLQ ILK+W P + L DGLL+ IF+DGLR++F++W+I QKPSSLNEAL
Sbjct: 220 QGTEESVRSYFLRLQWILKRW-PDHGLPDGLLEGIFIDGLRKDFQDWIIPQKPSSLNEAL 279

Query: 260 RLAFGFEQVRTVSTSGKRGFLRCGFCEGPHEELVCEVRERMRQLWKSREKKNTVD----- 319
           RLAF +E+V+++    ++    CGFC G HEE  CE+RERMR LW  + KK T D     
Sbjct: 280 RLAFAWEKVQSIRGGREK---ECGFCSGGHEEEGCEIRERMRGLW-VKSKKQTRDYSGRI 339

Query: 320 VVQSDGREAAMATAELMRSSSAISRNESEVENDGGE-MVGLKKKSQCQCWKHQCGMKKLD 375
           V   DG E      E   S    SRN  + E +G E M+G KKKSQCQC KHQC  KKL+
Sbjct: 340 VNDEDGEE-----FERRVSVGGESRNVGKNEEEGEEGMMGWKKKSQCQCGKHQCWKKKLE 365

The following BLAST results are available for this feature:

BLAST of Cla013544 vs. TrEMBL


Match Name	E-value	Identity	Description
W9R9S0_9ROSA	4.0e-91	49.75	Uncharacterized protein OS=Morus notabilis GN=L484_004813 PE=4 SV=1	[more]
B9RWN5_RICCO	1.7e-89	48.94	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1022950 PE=4 SV=1	[more]
A5C7E6_VITVI	2.1e-87	51.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007470 PE=4 SV=1	[more]
A0A061DJI4_THECC	7.8e-87	50.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_001704 PE=4 SV=1	[more]
K7KXT1_SOYBN	8.7e-62	42.82	Uncharacterized protein OS=Glycine max GN=GLYMA_06G277800 PE=4 SV=1	[more]

BLAST of Cla013544 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703109765\|ref\|XP_010099386.1\|	5.8e-91	49.75	hypothetical protein L484_004813 [Morus notabilis]	[more]
gi\|223542750\|gb\|EEF44287.1\|	2.4e-89	48.94	conserved hypothetical protein [Ricinus communis]	[more]
gi\|147817046\|emb\|CAN62167.1\|	1.0e-87	51.35	hypothetical protein VITISV_007470 [Vitis vinifera]	[more]
gi\|590709920\|ref\|XP_007048687.1\|	1.1e-86	50.00	Uncharacterized protein TCM_001704 [Theobroma cacao]	[more]
gi\|731408992\|ref\|XP_010657036.1\|	1.6e-72	48.79	PREDICTED: uncharacterized protein LOC104880826 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013544	Cla013544.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 136..232 score: 2.9
None	No IPR available	PANTHER	PTHR33223	FAMILY NOT NAMED	coord: 92..259 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013544	Cla97C02G043590	Watermelon (97103) v2	wmwmbB316
Cla013544	ClCG02G017800	Watermelon (Charleston Gray)	wcgwmB197
Cla013544	CSPI06G15810	Wild cucumber (PI 183967)	cpiwmB551
Cla013544	CmaCh02G000800	Cucurbita maxima (Rimu)	cmawmB588
Cla013544	CmoCh02G000780	Cucurbita moschata (Rifu)	cmowmB582
Cla013544	Lsi10G015890	Bottle gourd (USVL1VR-Ls)	lsiwmB073
Cla013544	Bhi10G000829	Wax gourd	wgowmB390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013544	Cucurbita pepo (Zucchini)	cpewmB054
Cla013544	Cucurbita pepo (Zucchini)	cpewmB265
Cla013544	Cucurbita pepo (Zucchini)	cpewmB298
Cla013544	Cucurbita pepo (Zucchini)	cpewmB303
Cla013544	Cucurbita pepo (Zucchini)	cpewmB668
Cla013544	Cucurbita pepo (Zucchini)	cpewmB724
Cla013544	Bottle gourd (USVL1VR-Ls)	lsiwmB078
Cla013544	Cucumber (Gy14) v2	cgybwmB561
Cla013544	Melon (DHL92) v3.6.1	medwmB239
Cla013544	Silver-seed gourd	carwmB0030
Cla013544	Silver-seed gourd	carwmB0412
Cla013544	Silver-seed gourd	carwmB0719
Cla013544	Cucumber (Chinese Long) v3	cucwmB627
Cla013544	Watermelon (97103) v2	wmwmbB347
Cla013544	Wax gourd	wgowmB277
Cla013544	Wax gourd	wgowmB396
Cla013544	Watermelon (97103) v1	wmwmB109
Cla013544	Cucurbita maxima (Rimu)	cmawmB125
Cla013544	Cucurbita maxima (Rimu)	cmawmB500
Cla013544	Cucurbita maxima (Rimu)	cmawmB524
Cla013544	Cucurbita maxima (Rimu)	cmawmB540
Cla013544	Cucurbita maxima (Rimu)	cmawmB593
Cla013544	Cucurbita moschata (Rifu)	cmowmB112
Cla013544	Cucurbita moschata (Rifu)	cmowmB199
Cla013544	Cucurbita moschata (Rifu)	cmowmB493
Cla013544	Cucurbita moschata (Rifu)	cmowmB513
Cla013544	Cucurbita moschata (Rifu)	cmowmB530
Cla013544	Cucurbita moschata (Rifu)	cmowmB586
Cla013544	Melon (DHL92) v3.5.1	mewmB248
Cla013544	Watermelon (Charleston Gray)	wcgwmB388
Cla013544	Cucumber (Chinese Long) v2	cuwmB598