Cla013158 (gene) Watermelon (97103) v1

Overview
NameCla013158
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUbiquitin-protein ligase/ zinc ion binding protein (AHRD V1 **** B4FXK9_MAIZE); contains Interpro domain(s) IPR004162 Seven in absentia protein
LocationChr5 : 11687068 .. 11688492 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCTCGAGCATTAGACGGCGAAAGTGAGAGACAACGTTCCCTCATTAGTGGCAGAGGCAAGAACGAGGCGATGAACGTCCTATTCACCGATCCTCAGATTCTCGATTGCTATATTTGTTGCGAACGCTTGTCAATTCCTGTTTTCCAGGTCCGATTAACCTCTTTTCCGCTTCAAATTGTGTTTATTGTTCATCTGGATGTCTCTGATGCTTTGTTCTTCTCGCCCGTTTTGGTTTTTGTAACTTTGAATACTGTAGTTTCGCTTGTGTGTGTGTTTTGTTGCTTTTGACGATTTTGAAATCCCCTTTTCTATGAGGTTTTTATTTTCTCTTTTTGAAGTTTATTGTGTAGACTGTGGATTTCCATTAGAAGTAATGGATTGTTTTCGAAAAATTAGAGATGGAGCTTGTGTTGCCAAATATACTAGAGTTATAAGACTGCATGATTGAAATTCTTAAATGTTTTGATGTGAATAGTCTTAGAAAATGGGAGAAAATTCTAGATATTATGACTTCTTAATTGCTTACCTTGTTAGTATTATCTTGAGTAAATGTCAGAATCAAGCCACAGTTTATTTGATTTTATCTTTACCTTTTCAATTGTATGGATTATTGGATGTTCTTCACTGTTTAGAAACATGAACTTGAAGGGTATGGATATAGAAGAAAATGAAGTTTACATTTGTGTTTATAATATCTTATTTTGGTATTTATGAGTCGATTTTATTTCATACAAACATATACTTTGGTGTTGGATGAATTAGTGTGAGAATGGGCATATTTCTTGCTCTAGCTGCTGCACCAAAATTCAGAACAAATGCCCTAGCTGCAGCTTGGCAATTGGCTACATACGTTGCAGGGCAATTGAGAAGGTTTTGGAATCAATCAAGGTACCGTGCCGAAACACGGTATACGGATGCAAAATGACGATGAGTTTGAACGAGATAAATGACCATGAGCCCTCGTGCACATACGAACCGTGCTCGTGCCCTTTTGATGATTGCACATTTGTTAGTTCAGCTGAGAAGTTGAGCTTACACTTCAGCAAAAAACACAAAAACTCAGCCAAAAGCTTCTCTTACAATGCGAGGTTCACTGTATGCTTGAACAATGGTGATAGTCATCGTATTCTTCAAGCAGATAACGATGGAGTTTTGTTCTTCCTCTCTTACACTTTCGAAATTTTCGGGAATGCGGTAACTGTGAATCGGATTGGACCTTTGTCATCTGAGAAAAAGTTCTGTTACGAAATTAAAGCGAAAACACAGGGCAGTGTTCTTTCTTTACAATCAATAGCAAAGGAGATCCAAGGTTGGAGTAAAGTTCCTCCTTCAAAGGGATCGCTTTTGATTCCGAACGAGTACTTTGGATCTTCAGCCCAGACGATCTTGGAGATTCGCATTTGGCCTGCACACTAA

mRNA sequence

ATGGCGGATTCTCGAGCATTAGACGGCGAAAGTGAGAGACAACGTTCCCTCATTAGTGGCAGAGGCAAGAACGAGGCGATGAACGTCCTATTCACCGATCCTCAGATTCTCGATTGCTATATTTGTTGCGAACGCTTGTCAATTCCTGTTTTCCAGTGTGAGAATGGGCATATTTCTTGCTCTAGCTGCTGCACCAAAATTCAGAACAAATGCCCTAGCTGCAGCTTGGCAATTGGCTACATACGTTGCAGGGCAATTGAGAAGGTTTTGGAATCAATCAAGGTACCGTGCCGAAACACGGTATACGGATGCAAAATGACGATGAGTTTGAACGAGATAAATGACCATGAGCCCTCGTGCACATACGAACCGTGCTCGTGCCCTTTTGATGATTGCACATTTGTTAGTTCAGCTGAGAAGTTGAGCTTACACTTCAGCAAAAAACACAAAAACTCAGCCAAAAGCTTCTCTTACAATGCGAGGTTCACTGTATGCTTGAACAATGGTGATAGTCATCGTATTCTTCAAGCAGATAACGATGGAGTTTTGTTCTTCCTCTCTTACACTTTCGAAATTTTCGGGAATGCGGTAACTGTGAATCGGATTGGACCTTTGTCATCTGAGAAAAAGTTCTGTTACGAAATTAAAGCGAAAACACAGGGCAGTGTTCTTTCTTTACAATCAATAGCAAAGGAGATCCAAGGTTGGAGTAAAGTTCCTCCTTCAAAGGGATCGCTTTTGATTCCGAACGAGTACTTTGGATCTTCAGCCCAGACGATCTTGGAGATTCGCATTTGGCCTGCACACTAA

Coding sequence (CDS)

ATGGCGGATTCTCGAGCATTAGACGGCGAAAGTGAGAGACAACGTTCCCTCATTAGTGGCAGAGGCAAGAACGAGGCGATGAACGTCCTATTCACCGATCCTCAGATTCTCGATTGCTATATTTGTTGCGAACGCTTGTCAATTCCTGTTTTCCAGTGTGAGAATGGGCATATTTCTTGCTCTAGCTGCTGCACCAAAATTCAGAACAAATGCCCTAGCTGCAGCTTGGCAATTGGCTACATACGTTGCAGGGCAATTGAGAAGGTTTTGGAATCAATCAAGGTACCGTGCCGAAACACGGTATACGGATGCAAAATGACGATGAGTTTGAACGAGATAAATGACCATGAGCCCTCGTGCACATACGAACCGTGCTCGTGCCCTTTTGATGATTGCACATTTGTTAGTTCAGCTGAGAAGTTGAGCTTACACTTCAGCAAAAAACACAAAAACTCAGCCAAAAGCTTCTCTTACAATGCGAGGTTCACTGTATGCTTGAACAATGGTGATAGTCATCGTATTCTTCAAGCAGATAACGATGGAGTTTTGTTCTTCCTCTCTTACACTTTCGAAATTTTCGGGAATGCGGTAACTGTGAATCGGATTGGACCTTTGTCATCTGAGAAAAAGTTCTGTTACGAAATTAAAGCGAAAACACAGGGCAGTGTTCTTTCTTTACAATCAATAGCAAAGGAGATCCAAGGTTGGAGTAAAGTTCCTCCTTCAAAGGGATCGCTTTTGATTCCGAACGAGTACTTTGGATCTTCAGCCCAGACGATCTTGGAGATTCGCATTTGGCCTGCACACTAA

Protein sequence

MADSRALDGESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGVLFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSSAQTILEIRIWPAH
Homology
[Close]
BLAST of Cla013158 vs. Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.9e-50
Identity = 99/252 (39.29%), Postives = 141/252 (55.95%), Query Frame = 1 

Query: 19  SGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAI 78
           S   K+  ++V   DP +LDC ICCE L IP+FQC+NGH++C+ CCTK++N+CPSC+L I
Sbjct: 93  SSSSKDSPLSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPI 152

Query: 79  GYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCPFDDCTFVSSA 138
           GY+RCRA+EKV+E+ +V C N  YGCK + S      HE  C + PCSCP  DC +    
Sbjct: 153 GYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYY 212

Query: 139 EKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGVLFFLSYTFEIFGNAVT 198
           + L+ H   +HK+   SF +N R T+ L+      ILQ +NDG +  +     +    V+
Sbjct: 213 KDLNNHVRAEHKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFRALHAVYVS 272

Query: 199 VNRIGPLS-SEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSSA 258
           V+ I PL+    +    +   T  S+L    + K IQ  +   P  G +LIP+  F  S 
Sbjct: 273 VSCIAPLTPGVGRLSCRLAKITVDSLLKQGFMVKNIQKVTNEHPEDGFMLIPSYLF--SG 332

Query: 259 QTILEIRIWPAH 270
              L ++IW  H
Sbjct: 333 NDNLNLQIWIGH 342

[Close]
BLAST of Cla013158 vs. Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.1e-39
Identity = 94/252 (37.30%), Postives = 138/252 (54.76%), Query Frame = 1 

Query: 8   DGESERQRSLIS---GRGK-NEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSC 67
           +G  +R  S IS   GR + ++  + + TD  ILDC IC + L IPVFQC NGH++CSSC
Sbjct: 10  NGSQKRHCSSISSDDGRKRVDKTRSAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSC 69

Query: 68  CTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYE 127
           C K++NKCP+C+L +G+IRCRA+E+VLES+ VPCR    GC  T+     + HE  C + 
Sbjct: 70  CPKLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFS 129

Query: 128 PCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRIL--QADNDG 187
           PCSCP   C +  S + L  H+   H   + ++S+N    +      S +IL  +     
Sbjct: 130 PCSCPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKK 189

Query: 188 VLFFLSYTFEIFGNAVTVNRIGPLSSE-KKFCYEIKAKT-QGSVLSLQS-IAKEIQGWSK 247
           +LF +    E  G  V+V+ I P + E  +F Y +   T +G  ++ QS   K++   S 
Sbjct: 190 LLFVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGVTMTYQSPKVKKVLKVSS 249

Query: 248 VPPSKGSLLIPN 251
             P    +LIP+
Sbjct: 250 QRPKDSFMLIPH 261

[Close]
BLAST of Cla013158 vs. Swiss-Prot
Match: SINL7_ARATH (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.3e-38
Identity = 93/261 (35.63%), Postives = 134/261 (51.34%), Query Frame = 1 

Query: 11  SERQRSLISGRGKNEAM--NVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQ 70
           S++++   S   K +A   + +  D +ILDC IC E  +IP+FQC+NGH++CSSCC K+ 
Sbjct: 21  SQKRQLSSSDAAKRDAKKRSTMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLN 80

Query: 71  NKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCP 130
           NKCP+C+  +G+ RCRA+E VLESI +PC N   GCK  +S  +   HE  C +  C+CP
Sbjct: 81  NKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACP 140

Query: 131 FDDCTFVSSAEKLSLHFSKKHK--NSAKSFSYNARFTVCLNNGDSHRILQADNDGVLFFL 190
             DC + SS + L  H+   H   N   +F  +   +V +N      I        LF +
Sbjct: 141 ALDCNYTSSYKDLYTHYRITHMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAV 200

Query: 191 SYTFEIFGNAVTVNRIGPLSSE-KKFCYEIKAKTQGSVLSLQS-IAKEIQGWSKVPPSKG 250
               E +G  VTV+ I P S E  ++ Y +     G  +  QS   K +   S   P + 
Sbjct: 201 QCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQEN 260

Query: 251 SLLIPNEYFGSSAQTILEIRI 266
            +LIPN         +LE+RI
Sbjct: 261 FMLIPNSLLRGD---VLEMRI 278

[Close]
BLAST of Cla013158 vs. Swiss-Prot
Match: SIL11_ARATH (E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-35
Identity = 84/237 (35.44%), Postives = 123/237 (51.90%), Query Frame = 1 

Query: 21  RGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPS--CSLAI 80
           R +NE  +    D  +LDC +C E L+IP FQC++GHI C+ C  K+ NKCP   C L I
Sbjct: 25  RMENETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPI 84

Query: 81  GYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCPFDDCTFVSSA 140
           G  RC A+E+VLES  VPC+NT +GC  ++S  +++ HE  C Y  CSCP  +C +  S 
Sbjct: 85  GNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCPNLECNYTGSY 144

Query: 141 EKLSLHFSKKHKNSAKSFSYNARFT---VCLNNGDSHRILQADNDGVLFFLSYTFEIFGN 200
             +  HF ++H  ++   S    ++   V +N  +   +L      +LF +    E  G 
Sbjct: 145 NIIYGHFMRRHLYNSTIVSSKWGYSTVDVLINIKEKVSVLWESRQKLLFVVQCFKERHGV 204

Query: 201 AVTVNRIGPLSSE-KKFCYEIKAKTQGSVLSLQS-IAKEIQGWSKVPPSKGSLLIPN 251
            VTV RI P +SE KKF Y +     G  ++ +S   K +   +   P    + +PN
Sbjct: 205 YVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYESPEVKRLLEVNSQIPDDSFMFVPN 261

[Close]
BLAST of Cla013158 vs. Swiss-Prot
Match: SINL9_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-35
Identity = 81/234 (34.62%), Postives = 119/234 (50.85%), Query Frame = 1 

Query: 23  KNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           K +   ++  D  ILDC ICCE L+ P+FQC+NGH++C SCC K+ NKCP+C+L +G+ R
Sbjct: 22  KRQRSAIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSR 81

Query: 83  CRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCPFDDCTFVSSAEKLS 142
            RA+E VLESI +PC N  +GC  +    + + HE  C +  CSCP   C +  S + L 
Sbjct: 82  SRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLY 141

Query: 143 LHFSKKHKN----SAKSFSYNARFTVCLNNGDSHRILQADNDGVLFFLSYTFEIFGNAVT 202
            H+   H      + K F     FT  +   D   I +     +L  +    E  G  VT
Sbjct: 142 AHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEKKLLLAVQCFREPCGVYVT 201

Query: 203 VNRIGPLSSE-KKFCYEIKAKTQGSVLSLQS-IAKEIQGWSKVPPSKGSLLIPN 251
           V+ I P + E  +F Y++     G  ++ +S   K +   S   P +  +LIP+
Sbjct: 202 VSFIAPSAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSIETPQENFMLIPH 255

[Close]
BLAST of Cla013158 vs. TrEMBL
Match: A0A0A0L9Z6_CUCSA (E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_3G185660 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 1.0e-128
Identity = 220/269 (81.78%), Postives = 240/269 (89.22%), Query Frame = 1 

Query: 1   MADSRALDGESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISC 60
           M DSR+ DG SER+ S+IS RG N  +NV+FTDPQILDCYICCE LSIPVFQCENGHI+C
Sbjct: 1   MEDSRSSDGGSERRSSVISRRGTNGTLNVIFTDPQILDCYICCEPLSIPVFQCENGHIAC 60

Query: 61  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSC 120
           SSCCTK QNKCPSC+LAIGYIRCRAIEKVLESIK+PC+N +YGCK  M LN INDHE  C
Sbjct: 61  SSCCTKAQNKCPSCTLAIGYIRCRAIEKVLESIKLPCQNAIYGCKTVMGLNLINDHESLC 120

Query: 121 TYEPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADND 180
            YEPCSCP D+CTFV S E+L LHF+KKHK+SAK FSYN RFT+CLNNGD+HRIL+A+ND
Sbjct: 121 RYEPCSCPLDNCTFVGSTEQLGLHFTKKHKDSAKIFSYNTRFTICLNNGDTHRILKAEND 180

Query: 181 GVLFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVP 240
           GVLFFLSYTFEIFGNAVT+NRIGPLSSEKKFCYEIKAKT GSVLSLQSIAKEIQG  KVP
Sbjct: 181 GVLFFLSYTFEIFGNAVTMNRIGPLSSEKKFCYEIKAKTLGSVLSLQSIAKEIQGLIKVP 240

Query: 241 PSKGSLLIPNEYFGSSAQTILEIRIWPAH 270
           PSKGSLLIPNEYFGSS QT+LEI IWPAH
Sbjct: 241 PSKGSLLIPNEYFGSSTQTMLEISIWPAH 269

[Close]
BLAST of Cla013158 vs. TrEMBL
Match: W9S0Z7_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_027128 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.8e-67
Identity = 134/263 (50.95%), Postives = 170/263 (64.64%), Query Frame = 1 

Query: 3   DSRALDGESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSS 62
           DS + D   E  R L +    + +++V  TDP +LDC IC E L++PVFQCENGHI+CSS
Sbjct: 90  DSISADANQEDPRPLSTN--SDRSISVFLTDPDVLDCCICFEALTVPVFQCENGHIACSS 149

Query: 63  CCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTY 122
           CCTK+ NKCPSCS  IGY RCRAIEKVLES+K+ C+N  YGCK  +S +EI DHE +CT+
Sbjct: 150 CCTKLGNKCPSCSWPIGYNRCRAIEKVLESVKIACQNKQYGCKEMVSYSEIKDHETTCTH 209

Query: 123 EPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGV 182
            PCSCP   C F+SSA++L  HF  +H +SA  F YN  FTV LN GD   +LQ  + G 
Sbjct: 210 APCSCPLTSCNFISSAKQLYQHFRSQHADSAVLFQYNCDFTVTLNEGDKFLVLQERDGGG 269

Query: 183 LFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPPS 242
           LF L+   E  GN V+V+ IGP S  K + Y + AK  G+ L L+S A   QG +    S
Sbjct: 270 LFILNNETETLGNLVSVSCIGPYSFGKSY-YNLLAKCDGNTLRLESFATCTQGQADYSLS 329

Query: 243 KGSLLIPNEYFGSSAQTILEIRI 266
              LLIP  +FGSS Q  L++ I
Sbjct: 330 SVYLLIPPGFFGSSGQLKLDLFI 349

[Close]
BLAST of Cla013158 vs. TrEMBL
Match: B9T323_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0326980 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.9e-66
Identity = 130/248 (52.42%), Postives = 161/248 (64.92%), Query Frame = 1 

Query: 20  GRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIG 79
           G  +N A+ V  TDP++LDC IC E LSIPVFQCENGH +CSSCC K+ +KCPSCSL IG
Sbjct: 103 GTARNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPSCSLPIG 162

Query: 80  YIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCPFDDCTFVSSAE 139
           Y RCRAIEKVLES+K+PC N  YGCK  +S ++  DH+  C   PCSCP   C+FV S+ 
Sbjct: 163 YNRCRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCSFVGSSR 222

Query: 140 KLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGVLFFLSYTFEIFGNAVTV 199
           +L  HFS KHK SA  F YN  F V     D   ILQ + +GV+FFL  T EI GN +TV
Sbjct: 223 QLYQHFSIKHKGSAAPFRYNITFPVFFTLNDKSLILQEEKEGVVFFLKNTAEILGNVITV 282

Query: 200 NRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPP-SKGSLLIPNEYFGSSAQ 259
           N +G  SS+  + YE+ A+ +GS L  QS  K IQ  +   P S   L+IP  +FGS  Q
Sbjct: 283 NCLGGPSSKGGYFYELAARMEGSNLKFQSFTKNIQKVNHDDPHSDTFLIIPGSFFGSYGQ 342

Query: 260 TILEIRIW 267
             L++ IW
Sbjct: 343 ISLDLCIW 350

[Close]
BLAST of Cla013158 vs. TrEMBL
Match: A0A067FAH4_CITSI (E3 ubiquitin-protein ligase OS=Citrus sinensis GN=CISIN_1g020280mg PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.6e-65
Identity = 135/265 (50.94%), Postives = 165/265 (62.26%), Query Frame = 1 

Query: 3   DSRALD--GESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISC 62
           D  ++D  G  E+    ++G  +N   +V  TDP++ DC IC E L+ PVFQCENGHI+C
Sbjct: 50  DDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIAC 109

Query: 63  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSC 122
           S+CC+KI NKCPSC   IGY RCRAIEKVLES+KV CRN+ YGCK+TMS  + +DHE  C
Sbjct: 110 STCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKIC 169

Query: 123 TYEPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADND 182
            + PCSCP  DC FV SA  L  HFS KHKNSA  F YN    V LN  +   +LQ + D
Sbjct: 170 PHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGD 229

Query: 183 GVLFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVP 242
           GVLF LS   E  G+ ++V+ I P S +    Y I A   GS +  QS  K IQ     P
Sbjct: 230 GVLFILSSRSETLGHVISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNP 289

Query: 243 PSKGSLLIPNEYFGSSAQTILEIRI 266
           PS G LL+P E FGSS    LE+ I
Sbjct: 290 PSTGFLLVPIESFGSSGDLKLELCI 313

[Close]
BLAST of Cla013158 vs. TrEMBL
Match: V4UW18_9ROSI (E3 ubiquitin-protein ligase OS=Citrus clementina GN=CICLE_v10012174mg PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.6e-65
Identity = 135/265 (50.94%), Postives = 165/265 (62.26%), Query Frame = 1 

Query: 3   DSRALD--GESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISC 62
           D  ++D  G  E+    ++G  +N   +V  TDP++ DC IC E L+ PVFQCENGHI+C
Sbjct: 50  DDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIAC 109

Query: 63  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSC 122
           S+CC+KI NKCPSC   IGY RCRAIEKVLES+KV CRN+ YGCK+TMS  + +DHE  C
Sbjct: 110 STCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKIC 169

Query: 123 TYEPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADND 182
            + PCSCP  DC FV SA  L  HFS KHKNSA  F YN    V LN  +   +LQ + D
Sbjct: 170 PHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGD 229

Query: 183 GVLFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVP 242
           GVLF LS   E  G+ ++V+ I P S +    Y I A   GS +  QS  K IQ     P
Sbjct: 230 GVLFILSSRSETLGHVISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNP 289

Query: 243 PSKGSLLIPNEYFGSSAQTILEIRI 266
           PS G LL+P E FGSS    LE+ I
Sbjct: 290 PSTGFLLVPIESFGSSGDLKLELCI 313

[Close]
BLAST of Cla013158 vs. NCBI nr
Match: gi|778679778|ref|XP_004140738.2| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 1.4e-128
Identity = 220/269 (81.78%), Postives = 240/269 (89.22%), Query Frame = 1 

Query: 1   MADSRALDGESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISC 60
           M DSR+ DG SER+ S+IS RG N  +NV+FTDPQILDCYICCE LSIPVFQCENGHI+C
Sbjct: 1   MEDSRSSDGGSERRSSVISRRGTNGTLNVIFTDPQILDCYICCEPLSIPVFQCENGHIAC 60

Query: 61  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSC 120
           SSCCTK QNKCPSC+LAIGYIRCRAIEKVLESIK+PC+N +YGCK  M LN INDHE  C
Sbjct: 61  SSCCTKAQNKCPSCTLAIGYIRCRAIEKVLESIKLPCQNAIYGCKTVMGLNLINDHESLC 120

Query: 121 TYEPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADND 180
            YEPCSCP D+CTFV S E+L LHF+KKHK+SAK FSYN RFT+CLNNGD+HRIL+A+ND
Sbjct: 121 RYEPCSCPLDNCTFVGSTEQLGLHFTKKHKDSAKIFSYNTRFTICLNNGDTHRILKAEND 180

Query: 181 GVLFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVP 240
           GVLFFLSYTFEIFGNAVT+NRIGPLSSEKKFCYEIKAKT GSVLSLQSIAKEIQG  KVP
Sbjct: 181 GVLFFLSYTFEIFGNAVTMNRIGPLSSEKKFCYEIKAKTLGSVLSLQSIAKEIQGLIKVP 240

Query: 241 PSKGSLLIPNEYFGSSAQTILEIRIWPAH 270
           PSKGSLLIPNEYFGSS QT+LEI IWPAH
Sbjct: 241 PSKGSLLIPNEYFGSSTQTMLEISIWPAH 269

[Close]
BLAST of Cla013158 vs. NCBI nr
Match: gi|659114528|ref|XP_008457096.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis melo])

HSP 1 Score: 352.8 bits (904), Expect = 5.2e-94
Identity = 163/219 (74.43%), Postives = 186/219 (84.93%), Query Frame = 1 

Query: 1   MADSRALDGESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISC 60
           MADS++ DG SER+ S+IS RG N  MNV+FTDPQILDCYIC   LSIP+FQCEN HI+C
Sbjct: 1   MADSQSSDGGSERRSSVISRRGTNGTMNVIFTDPQILDCYICWNXLSIPIFQCENXHIAC 60

Query: 61  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSC 120
           SSCCTK+QNKCPSC LAIGYIRCRAIEKVLESIK+PC+N +Y CK  M LN IND E  C
Sbjct: 61  SSCCTKVQNKCPSCILAIGYIRCRAIEKVLESIKLPCKNAIYRCKTAMDLNLINDQETLC 120

Query: 121 TYEPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADND 180
            YEPCSCP D+CTFV  AE+L LHFS++HKNSAK FSYN RFT+CLNNGD++RIL+A++D
Sbjct: 121 RYEPCSCPLDNCTFVGLAEQLYLHFSRRHKNSAKHFSYNTRFTICLNNGDTYRILKAEDD 180

Query: 181 GVLFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKT 220
           GVLFFLSYTFEIFGNA+TVN IGPLSSEKKF Y+I   T
Sbjct: 181 GVLFFLSYTFEIFGNAITVNWIGPLSSEKKFSYKINENT 219

[Close]
BLAST of Cla013158 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 4.1e-67
Identity = 127/263 (48.29%), Postives = 175/263 (66.54%), Query Frame = 1 

Query: 10  ESERQRSLISGRG------KNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSC 69
           E   +R+L SG+        N ++++   DP++LDC ICCE LSIP+FQCENGHI+CSSC
Sbjct: 79  EDGGKRALWSGKSCTKNAKPNGSVSMFLIDPEVLDCSICCEPLSIPIFQCENGHIACSSC 138

Query: 70  CTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYE 129
           C K++NKC +CS  IGY RCRA+EKVLESIK+PC+ + +GCK  +     +DHE +C Y 
Sbjct: 139 CNKLKNKCATCSWPIGYNRCRAVEKVLESIKLPCKQSKFGCKEIIGYGNESDHEKTCLYA 198

Query: 130 PCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGVL 189
           PC CP+ DC F++SA++LSLHFS KH NSA +F +++ FT+CL   D++ +LQ + DGVL
Sbjct: 199 PCLCPYSDCKFIASAKQLSLHFSNKHTNSATNFHFSSSFTICLKTNDTYHVLQ-EQDGVL 258

Query: 190 FFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPPSK 249
           F LS + E  G+ V +  + P S ++ F Y+++A+TQ   L LQS  K IQ  S    S 
Sbjct: 259 FILSNSSENLGSVVKICCLQPPSLKETFSYDLRAETQDLSLVLQSSMKNIQSSSDCCHST 318

Query: 250 GSLLIPNEYFGSSAQTILEIRIW 267
             L+IP + F SS    L I IW
Sbjct: 319 RFLMIPRDLFSSSGMIKLNICIW 340

[Close]
BLAST of Cla013158 vs. NCBI nr
Match: gi|703146966|ref|XP_010108933.1| (E3 ubiquitin-protein ligase SINA-like 10 [Morus notabilis])

HSP 1 Score: 263.1 bits (671), Expect = 5.4e-67
Identity = 134/263 (50.95%), Postives = 170/263 (64.64%), Query Frame = 1 

Query: 3   DSRALDGESERQRSLISGRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSS 62
           DS + D   E  R L +    + +++V  TDP +LDC IC E L++PVFQCENGHI+CSS
Sbjct: 90  DSISADANQEDPRPLSTN--SDRSISVFLTDPDVLDCCICFEALTVPVFQCENGHIACSS 149

Query: 63  CCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTY 122
           CCTK+ NKCPSCS  IGY RCRAIEKVLES+K+ C+N  YGCK  +S +EI DHE +CT+
Sbjct: 150 CCTKLGNKCPSCSWPIGYNRCRAIEKVLESVKIACQNKQYGCKEMVSYSEIKDHETTCTH 209

Query: 123 EPCSCPFDDCTFVSSAEKLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGV 182
            PCSCP   C F+SSA++L  HF  +H +SA  F YN  FTV LN GD   +LQ  + G 
Sbjct: 210 APCSCPLTSCNFISSAKQLYQHFRSQHADSAVLFQYNCDFTVTLNEGDKFLVLQERDGGG 269

Query: 183 LFFLSYTFEIFGNAVTVNRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPPS 242
           LF L+   E  GN V+V+ IGP S  K + Y + AK  G+ L L+S A   QG +    S
Sbjct: 270 LFILNNETETLGNLVSVSCIGPYSFGKSY-YNLLAKCDGNTLRLESFATCTQGQADYSLS 329

Query: 243 KGSLLIPNEYFGSSAQTILEIRI 266
              LLIP  +FGSS Q  L++ I
Sbjct: 330 SVYLLIPPGFFGSSGQLKLDLFI 349

[Close]
BLAST of Cla013158 vs. NCBI nr
Match: gi|255583779|ref|XP_002532642.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Ricinus communis])

HSP 1 Score: 260.8 bits (665), Expect = 2.7e-66
Identity = 130/248 (52.42%), Postives = 161/248 (64.92%), Query Frame = 1 

Query: 20  GRGKNEAMNVLFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIG 79
           G  +N A+ V  TDP++LDC IC E LSIPVFQCENGH +CSSCC K+ +KCPSCSL IG
Sbjct: 103 GTARNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPSCSLPIG 162

Query: 80  YIRCRAIEKVLESIKVPCRNTVYGCKMTMSLNEINDHEPSCTYEPCSCPFDDCTFVSSAE 139
           Y RCRAIEKVLES+K+PC N  YGCK  +S ++  DH+  C   PCSCP   C+FV S+ 
Sbjct: 163 YNRCRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCSFVGSSR 222

Query: 140 KLSLHFSKKHKNSAKSFSYNARFTVCLNNGDSHRILQADNDGVLFFLSYTFEIFGNAVTV 199
           +L  HFS KHK SA  F YN  F V     D   ILQ + +GV+FFL  T EI GN +TV
Sbjct: 223 QLYQHFSIKHKGSAAPFRYNITFPVFFTLNDKSLILQEEKEGVVFFLKNTAEILGNVITV 282

Query: 200 NRIGPLSSEKKFCYEIKAKTQGSVLSLQSIAKEIQGWSKVPP-SKGSLLIPNEYFGSSAQ 259
           N +G  SS+  + YE+ A+ +GS L  QS  K IQ  +   P S   L+IP  +FGS  Q
Sbjct: 283 NCLGGPSSKGGYFYELAARMEGSNLKFQSFTKNIQKVNHDDPHSDTFLIIPGSFFGSYGQ 342

Query: 260 TILEIRIW 267
             L++ IW
Sbjct: 343 ISLDLCIW 350

The following BLAST results are available for this feature:
BLAST of Cla013158 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIL10_ARATH7.9e-5039.29E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE... [more]
SINL6_ARATH8.1e-3937.30Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g... [more]
SINL7_ARATH5.3e-3835.63E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=... [more]
SIL11_ARATH1.9e-3535.44E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE... [more]
SINL9_ARATH2.5e-3534.62Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g... [more]
BLAST of Cla013158 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9Z6_CUCSA1.0e-12881.78E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_3G185660 PE=3 SV=1[more]
W9S0Z7_9ROSA3.8e-6750.95E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_027128 PE=3 SV=1[more]
B9T323_RICCO1.9e-6652.42E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0326980 PE=3 SV=1[more]
A0A067FAH4_CITSI1.6e-6550.94E3 ubiquitin-protein ligase OS=Citrus sinensis GN=CISIN_1g020280mg PE=3 SV=1[more]
V4UW18_9ROSI1.6e-6550.94E3 ubiquitin-protein ligase OS=Citrus clementina GN=CICLE_v10012174mg PE=3 SV=1[more]
BLAST of Cla013158 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679778|ref|XP_004140738.2|1.4e-12881.78PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus][more]
gi|659114528|ref|XP_008457096.1|5.2e-9474.43PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SINA-like 10 [Cucumi... [more]
gi|659121126|ref|XP_008460511.1|4.1e-6748.29PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo][more]
gi|703146966|ref|XP_010108933.1|5.4e-6750.95E3 ubiquitin-protein ligase SINA-like 10 [Morus notabilis][more]
gi|255583779|ref|XP_002532642.1|2.7e-6652.42PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR004162SINA-like
IPR008974TRAF-like
IPR013010Znf_SIAH
IPR013083Znf_RING/FYVE/PHD
IPR013323SIAH-type domain
IPR0181217-in-absentia-prot_TRAF-dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0007275multicellular organism development
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU55412watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013158Cla013158.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU55412WMU55412transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 39..75
score: 8
IPR004162E3 ubiquitin-protein ligase SIN-likePANTHERPTHR10315SEVEN IN ABSENTIA HOMOLOGcoord: 10..266
score: 2.4
IPR008974TRAF-likeunknownSSF49599TRAF domain-likecoord: 92..254
score: 2.03
IPR013010Zinc finger, SIAH-typePROFILEPS51081ZF_SIAHcoord: 92..150
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 32..104
score: 8.6
IPR013323SIAH-type domainGENE3DG3DSA:3.90.890.10coord: 105..145
score: 1.6
IPR018121Seven-in-absentia protein, TRAF-like domainPFAMPF03145Sinacoord: 81..234
score: 9.1
NoneNo IPR availablePANTHERPTHR10315:SF43E3 UBIQUITIN-PROTEIN LIGASEcoord: 10..266
score: 2.4