Cla012232 (gene) Watermelon (97103) v1

Overview
NameCla012232
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description50S ribosomal protein L36 (AHRD V1 *-*- F7UMZ0_SYNY3); contains Interpro domain(s) IPR000473 Ribosomal protein L36
LocationChr6 : 19942662 .. 19943487 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTCCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTGAAACGTCGAGGTCGAGTATATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTGAGTACTTAACTTTCCTTTGGTTTGGGCATTGTCAGTTGTCTTTGAATGTGTACTTTATCCGTTCAAAGTATTTTTAAATGGAAAACTCTGAACAATTATGCCTTTTGCCAATGATGAGAGTTGTCGTAGAACTCAGGCCAATGACTCCCAAGTTATTTCTTAAGGGGATTGTATGAATGTAGTTTGAGTTTATGCAAAACCTCAAAGGACAGAACTCTTATATGTAAAATTGTAGAACTTTTGTGAATATGGTGAAGGCTTGATTCCGGGATTGGTGGTTCAAATTTGTCACGTATAAGTCTTCTTTCAGTTTGATCCTCTACAATGCAGCTAGAGTTTGTTTTTGGGATTGCTGGAAGCTGTTGTTTTTTCGTTAATCGTCATCATGAATAATATGCTCAGTTCTCTTCTTGTTCACATATCTGTATATGGTATGAATTGTGATGGTAGGCATGTTCATATTTGGGATTAATCACACGATTCTTGTAGCTAAATACATTAAACGTTGCCCATTTTTCAGGTTGTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCAAACGGGGCTGGCTTCTCTCATCCCCCAAAAGCATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

mRNA sequence

ATGAAAGTCCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTGAAACGTCGAGGTCGAGTATATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTGTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCAAACGGGGCTGGCTTCTCTCATCCCCCAAAAGCATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

Coding sequence (CDS)

ATGAAAGTCCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTGAAACGTCGAGGTCGAGTATATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTGTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCAAACGGGGCTGGCTTCTCTCATCCCCCAAAAGCATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

Protein sequence

MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
Homology
[Close]
BLAST of Cla012232 vs. Swiss-Prot
Match: RL36_SYNY3 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 1  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR+SVKKMC+ CR ++RRGRV V CS+NPKHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

[Close]
BLAST of Cla012232 vs. Swiss-Prot
Match: RL36_LACRJ (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-10
Identity = 30/38 (78.95%), Postives = 30/38 (78.95%), Query Frame = 1 

Query: 1  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]
BLAST of Cla012232 vs. Swiss-Prot
Match: RL36_LACRD (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-10
Identity = 30/38 (78.95%), Postives = 30/38 (78.95%), Query Frame = 1 

Query: 1  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]
BLAST of Cla012232 vs. Swiss-Prot
Match: RL36_LACCB (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 1  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]
BLAST of Cla012232 vs. Swiss-Prot
Match: RL36_LACC3 (50S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 1  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]
BLAST of Cla012232 vs. TrEMBL
Match: A5AX15_VITVI (Ribosomal protein OS=Vitis vinifera GN=VITISV_039227 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.3e-32
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCE+CRTVKRRGRVYV C++NPKHKQRQG+STFA EGP P + S    KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           I  +H  Q GLAS+IP+K EP+M+ GWR  LAS+L K+ N
Sbjct: 61  ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQXN 100

[Close]
BLAST of Cla012232 vs. TrEMBL
Match: A0A061GNH5_THECC (Ribosomal protein OS=Theobroma cacao GN=TCM_038089 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.5e-32
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 1 

Query: 1  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
          MKVR+SVKKMCEFCRTVKRRGRVYV C+SNPKHKQRQG+STFASEG  P   + + VK  
Sbjct: 1  MKVRASVKKMCEFCRTVKRRGRVYVLCTSNPKHKQRQGISTFASEGALPPTSTETNVKHA 60

Query: 61 ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLK 98
          I+PSHS + GLASL+P++ EP+++LGWR  LAS++ K
Sbjct: 61 IVPSHSMRPGLASLLPKRQEPSLMLGWRANLASLIFK 97

[Close]
BLAST of Cla012232 vs. TrEMBL
Match: D7TC22_VITVI (Ribosomal protein OS=Vitis vinifera GN=VIT_11s0016g05390 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCE+CRTVKRRGRVYV C++NPKHKQRQG+STFA EGP P + S    KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           I  +H  Q GLAS+IP+K EP+M+ GWR  LAS+L K+ N
Sbjct: 61  ISRNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQVN 100

[Close]
BLAST of Cla012232 vs. TrEMBL
Match: G7JE29_MEDTR (Ribosomal protein OS=Medicago truncatula GN=MTR_4g114610 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSL---LSRSEV 60
           MKVRSSVKKMCE+CRT+KR+GRVY+ C++NPKHKQRQG+STFA E PS  L   +S S  
Sbjct: 1   MKVRSSVKKMCEYCRTIKRKGRVYIMCTANPKHKQRQGMSTFAYEAPSHQLSVEISSSCA 60

Query: 61  KQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKK 99
            QEI P H+S+TGLAS+IPQ+H  +ML GWR+GLASIL KK
Sbjct: 61  AQEIKPLHTSRTGLASIIPQRHSLSMLYGWRVGLASILSKK 101

[Close]
BLAST of Cla012232 vs. TrEMBL
Match: W9QKG1_9ROSA (Ribosomal protein OS=Morus notabilis GN=L484_003789 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 69/100 (69.00%), Postives = 79/100 (79.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKRRGRVYV C++NPKHKQRQG+ST A EGP PS  S +  K E
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVLCTANPKHKQRQGVSTLAYEGPLPSQSSGTVSKPE 60

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           +  +     GLASLIP+K EP+M LGWRMGLAS+L K+ N
Sbjct: 61  VNVNQGVPVGLASLIPKKTEPSMTLGWRMGLASLLFKRSN 100

[Close]
BLAST of Cla012232 vs. NCBI nr
Match: gi|449465743|ref|XP_004150587.1| (PREDICTED: uncharacterized protein LOC101223220 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFASEGPSPSL SR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 60

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           ILPS S +TGLASLIPQK+EPTM LGWRMGLASILLKKHN
Sbjct: 61  ILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN 100

[Close]
BLAST of Cla012232 vs. NCBI nr
Match: gi|659086554|ref|XP_008443994.1| (PREDICTED: 54S ribosomal protein c83.06c, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-44
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQE
Sbjct: 40  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 99

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           ILPS  S+ GLASLIPQK+EPTMLLGWRMGLASILLKKHN
Sbjct: 100 ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 139

[Close]
BLAST of Cla012232 vs. NCBI nr
Match: gi|659086552|ref|XP_008443993.1| (PREDICTED: 54S ribosomal protein c83.06c, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-44
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQE
Sbjct: 40  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 99

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           ILPS  S+ GLASLIPQK+EPTMLLGWRMGLASILLKKHN
Sbjct: 100 ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 139

[Close]
BLAST of Cla012232 vs. NCBI nr
Match: gi|659086556|ref|XP_008443995.1| (PREDICTED: uncharacterized protein LOC103487446 isoform X3 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-44
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           ILPS  S+ GLASLIPQK+EPTMLLGWRMGLASILLKKHN
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]
BLAST of Cla012232 vs. NCBI nr
Match: gi|147794982|emb|CAN71764.1| (hypothetical protein VITISV_039227 [Vitis vinifera])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQE 60
           MKVRSSVKKMCE+CRTVKRRGRVYV C++NPKHKQRQG+STFA EGP P + S    KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  ILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN 101
           I  +H  Q GLAS+IP+K EP+M+ GWR  LAS+L K+ N
Sbjct: 61  ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQXN 100

The following BLAST results are available for this feature:
BLAST of Cla012232 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL36_SYNY31.0e-1076.3250S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpm... [more]
RL36_LACRJ1.7e-1078.9550S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=... [more]
RL36_LACRD1.7e-1078.9550S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE... [more]
RL36_LACCB2.3e-1073.6850S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1[more]
RL36_LACC32.3e-1073.6850S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 ... [more]
BLAST of Cla012232 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AX15_VITVI7.3e-3268.00Ribosomal protein OS=Vitis vinifera GN=VITISV_039227 PE=3 SV=1[more]
A0A061GNH5_THECC9.5e-3268.04Ribosomal protein OS=Theobroma cacao GN=TCM_038089 PE=3 SV=1[more]
D7TC22_VITVI1.6e-3168.00Ribosomal protein OS=Vitis vinifera GN=VIT_11s0016g05390 PE=3 SV=1[more]
G7JE29_MEDTR4.7e-3168.32Ribosomal protein OS=Medicago truncatula GN=MTR_4g114610 PE=2 SV=1[more]
W9QKG1_9ROSA1.4e-3069.00Ribosomal protein OS=Morus notabilis GN=L484_003789 PE=3 SV=1[more]
BLAST of Cla012232 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465743|ref|XP_004150587.1|4.8e-4591.00PREDICTED: uncharacterized protein LOC101223220 [Cucumis sativus][more]
gi|659086554|ref|XP_008443994.1|1.8e-4490.00PREDICTED: 54S ribosomal protein c83.06c, mitochondrial isoform X2 [Cucumis melo... [more]
gi|659086552|ref|XP_008443993.1|1.8e-4490.00PREDICTED: 54S ribosomal protein c83.06c, mitochondrial isoform X1 [Cucumis melo... [more]
gi|659086556|ref|XP_008443995.1|1.8e-4490.00PREDICTED: uncharacterized protein LOC103487446 isoform X3 [Cucumis melo][more]
gi|147794982|emb|CAN71764.1|1.0e-3168.00hypothetical protein VITISV_039227 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000473Ribosomal_L36
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0009536 plastid
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU15145watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU16717watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU53892watermelon EST collection version 2.0transcribed_cluster
WMU74463watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012232Cla012232.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU16717WMU16717transcribed_cluster
WMU15145WMU15145transcribed_cluster
WMU74463WMU74463transcribed_cluster
WMU53892WMU53892transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000473Ribosomal protein L36HAMAPMF_00251Ribosomal_L36coord: 1..38
score: 18
IPR000473Ribosomal protein L36PANTHERPTHR18804FAMILY NOT NAMEDcoord: 1..65
score: 2.8
IPR000473Ribosomal protein L36PFAMPF00444Ribosomal_L36coord: 1..38
score: 6.3
IPR000473Ribosomal protein L36TIGRFAMsTIGR01022TIGR01022coord: 1..38
score: 7.1
IPR000473Ribosomal protein L36PROSITEPS00828RIBOSOMAL_L36coord: 11..37
scor
IPR000473Ribosomal protein L36unknownSSF57840Ribosomal protein L36coord: 1..38
score: 2.88
NoneNo IPR availablePRODOMPD002101coord: 9..38
score: 1.0
NoneNo IPR availablePANTHERPTHR18804:SF7RIBOSOMAL PROTEINcoord: 1..65
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla012232Cla97C06G120390Watermelon (97103) v2wmwmbB406
Cla012232MELO3C010337Melon (DHL92) v3.5.1mewmB293
Cla012232ClCG06G011210Watermelon (Charleston Gray)wcgwmB344
Cla012232CSPIUnG00330Wild cucumber (PI 183967)cpiwmB637
Cla012232Cucsa.295180Cucumber (Gy14) v1cgywmB539
Cla012232CmaCh11G005450Cucurbita maxima (Rimu)cmawmB143
Cla012232CmaCh10G005470Cucurbita maxima (Rimu)cmawmB071
Cla012232CmoCh11G005430Cucurbita moschata (Rifu)cmowmB128
Cla012232CmoCh10G005860Cucurbita moschata (Rifu)cmowmB063
Cla012232Lsi06G009730Bottle gourd (USVL1VR-Ls)lsiwmB415
Cla012232Cp4.1LG18g04920Cucurbita pepo (Zucchini)cpewmB372
Cla012232Cp4.1LG04g09520Cucurbita pepo (Zucchini)cpewmB679
Cla012232CsGy1G018910Cucumber (Gy14) v2cgybwmB081
Cla012232MELO3C010337.2Melon (DHL92) v3.6.1medwmB288
Cla012232Carg12128Silver-seed gourdcarwmB0042
Cla012232Carg09916Silver-seed gourdcarwmB0126
Cla012232CsaV3_1G030220Cucumber (Chinese Long) v3cucwmB093
Cla012232Bhi02G000824Wax gourdwgowmB684
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla012232Cucumber (Gy14) v2cgybwmB264
Cla012232Cucumber (Gy14) v2cgybwmB332
Cla012232Melon (DHL92) v3.6.1medwmB382
Cla012232Melon (DHL92) v3.6.1medwmB425
Cla012232Melon (DHL92) v3.6.1medwmB535
Cla012232Silver-seed gourdcarwmB0245
Cla012232Silver-seed gourdcarwmB0570
Cla012232Silver-seed gourdcarwmB0636
Cla012232Cucumber (Chinese Long) v3cucwmB180
Cla012232Cucumber (Chinese Long) v3cucwmB290
Cla012232Cucumber (Chinese Long) v3cucwmB373
Cla012232Watermelon (97103) v2wmwmbB390
Cla012232Watermelon (97103) v2wmwmbB403
Cla012232Watermelon (97103) v2wmwmbB415
Cla012232Wax gourdwgowmB152
Cla012232Wax gourdwgowmB240
Cla012232Wax gourdwgowmB648
Cla012232Watermelon (97103) v1wmwmB115
Cla012232Watermelon (97103) v1wmwmB139
Cla012232Watermelon (97103) v1wmwmB165
Cla012232Cucumber (Gy14) v1cgywmB121
Cla012232Cucumber (Gy14) v1cgywmB225
Cla012232Cucumber (Gy14) v1cgywmB574
Cla012232Cucurbita maxima (Rimu)cmawmB041
Cla012232Cucurbita maxima (Rimu)cmawmB182
Cla012232Cucurbita maxima (Rimu)cmawmB466
Cla012232Cucurbita maxima (Rimu)cmawmB775
Cla012232Cucurbita moschata (Rifu)cmowmB033
Cla012232Cucurbita moschata (Rifu)cmowmB170
Cla012232Cucurbita moschata (Rifu)cmowmB769
Cla012232Melon (DHL92) v3.5.1mewmB389
Cla012232Melon (DHL92) v3.5.1mewmB439
Cla012232Melon (DHL92) v3.5.1mewmB549
Cla012232Watermelon (Charleston Gray)wcgwmB111
Cla012232Watermelon (Charleston Gray)wcgwmB312
Cla012232Watermelon (Charleston Gray)wcgwmB396
Cla012232Cucumber (Chinese Long) v2cuwmB081
Cla012232Cucumber (Chinese Long) v2cuwmB168
Cla012232Cucumber (Chinese Long) v2cuwmB280
Cla012232Cucumber (Chinese Long) v2cuwmB356
Cla012232Cucurbita pepo (Zucchini)cpewmB128
Cla012232Cucurbita pepo (Zucchini)cpewmB779
Cla012232Cucurbita pepo (Zucchini)cpewmB819
Cla012232Bottle gourd (USVL1VR-Ls)lsiwmB120
Cla012232Bottle gourd (USVL1VR-Ls)lsiwmB342
Cla012232Bottle gourd (USVL1VR-Ls)lsiwmB461
Cla012232Cucumber (Gy14) v2cgybwmB161