Carg12128 (gene) Silver-seed gourd

Overview
NameCarg12128
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein L36
LocationCucurbita_argyrosperma_scaffold_054 : 122646 .. 124043 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAGATCCATGATTCGGCCATTTTGTGCTTTCAGTGTATACTTTCTCTTTTCTTTAATTTCATTGTTGGAATTTGCAATAGTGAGATGTGATAGTTTTACATCGCATTTGACTGCCGCTTTATGTCTTGGCTTCTTTTGTTTTCCTTCATACAGTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTAAGTACTTCCTTTTAAGGACGGACAATTTATTACTTGGGAGTAATGTATGAATGTAGTTCGAGTTTATGTAAAACATAAATGGCTGAACTTGTTAATGTAAAATTGTGTTCTTCAGCACCGAAAAGTGTGTTTCTTTTTTGTTTTAATGTGAGGATGAAGCTGAGGCCAGATTCTTGGAAATTAGTAGCTTAAGTTTGACACTCATAAGTCTTCTTCTAGTTCCATCCTCTACGAAGGAGCTGGAGATTAATCTTGGGGATAGATGGAAGTCATTTTTCCATTTTCATGATTAATAAGCTCAGTACACTTCTTGTTCACATATCCGTATATGGTATGAATGGTATGCAGGTTTTAACTTGGGATTAATCACTGGCGAAATGCATTAAAGTTCGCTCATTTTTCAGGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAGAGCTTAATCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGATAAAAGATGAAGCACTTCTGCTCTCAGATTTGTTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTTAAACAACTTTCGACCTGCAAAGTTTGATGTTGTAAACGTCAAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATAAAAGTCGAATTCCATTACGATTCAGGAACTTGTTCTAAATGTTGAATTTGAGTTCGGAATGTGTTTAAAATGAGATATAAATGAAGTTGGAAGCAGTAGAAGAAAAGAAACGACTGTTTTTGCTGTTAATAATAGCAAGCAGTGGATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCGTATAAACCACCAACAAGAATCCACCAATTGAACTATCC

mRNA sequence

TGTAGATCCATGATTCGGCCATTTTGTGCTTTCAGTGTATACTTTCTCTTTTCTTTAATTTCATTGTTGGAATTTGCAATAGTGAGATGTGATAGTTTTACATCGCATTTGACTGCCGCTTTATGTCTTGGCTTCTTTTGTTTTCCTTCATACAGTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAGAGCTTAATCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGATAAAAGATGAAGCACTTCTGCTCTCAGATTTGTTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTTAAACAACTTTCGACCTGCAAAGTTTGATGTTGTAAACGTCAAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATAAAAGTCGAATTCCATTACGATTCAGGAACTTGTTCTAAATGTTGAATTTGAGTTCGGAATGTGTTTAAAATGAGATATAAATGAAGTTGGAAGCAGTAGAAGAAAAGAAACGACTGTTTTTGCTGTTAATAATAGCAAGCAGTGGATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCGTATAAACCACCAACAAGAATCCACCAATTGAACTATCC

Coding sequence (CDS)

ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAG

Protein sequence

MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Homology
[Close]
BLAST of Carg12128 vs. NCBI nr
Match: XP_022933442.1 (uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 uncharacterized protein LOC111793393 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 8.2e-49
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]
BLAST of Carg12128 vs. NCBI nr
Match: XP_022971996.1 (uncharacterized protein LOC111470644 [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]
BLAST of Carg12128 vs. NCBI nr
Match: XP_022987917.1 (uncharacterized protein LOC111485318 [Cucurbita maxima])

HSP 1 Score: 181.0 bits (458), Expect = 2.0e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]
BLAST of Carg12128 vs. NCBI nr
Match: XP_022960589.1 (uncharacterized protein LOC111461324 [Cucurbita moschata])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]
BLAST of Carg12128 vs. NCBI nr
Match: XP_004150587.1 (PREDICTED: uncharacterized protein LOC101223220 [Cucumis sativus] >XP_004150588.1 PREDICTED: uncharacterized protein LOC101223220 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 6.3e-41
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PS S RTGLASLIPQK+EPTM  GWRMGLASIL KK N
Sbjct: 61  ILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN 100

[Close]
BLAST of Carg12128 vs. TAIR10
Match: AT5G20180.1 (Ribosomal protein L36)

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQ 60
           MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           E+   P      GLASL+ ++  PT  FGWR GLASIL+K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]
BLAST of Carg12128 vs. TAIR10
Match: ATCG00760.1 (ribosomal protein L36)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-09
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MK+RASV+K+CE CR +RRRGR+ + CS NP+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVICS-NPRHKQRQG 37

[Close]
BLAST of Carg12128 vs. Swiss-Prot
Match: sp|P73300|RL36_SYNY3 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-11
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVRASVKKMC+ CR +RRRGRV + CSANPKHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

[Close]
BLAST of Carg12128 vs. Swiss-Prot
Match: sp|B3WAJ5|RL36_LACCB (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]
BLAST of Carg12128 vs. Swiss-Prot
Match: sp|Q035A6|RL36_LACP3 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]
BLAST of Carg12128 vs. Swiss-Prot
Match: sp|Q88XW3|RL36_LACPL (50S ribosomal protein L36 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.7e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVK MCE C+ +RR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIRRKGRVMIICSANPKHKQRQG 38

[Close]
BLAST of Carg12128 vs. Swiss-Prot
Match: sp|A5VLI2|RL36_LACRD (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.7e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVKKMCE C+ V+R GRV + CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]
BLAST of Carg12128 vs. TrEMBL
Match: tr|A0A2N9GH06|A0A2N9GH06_FAGSY (Ribosomal protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26745 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-31
Identity = 67/98 (68.37%), Postives = 83/98 (84.69%), Query Frame = 0 

Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
          MKVR+SVKKMCEFC+TV+RRGRV++ C+ANPKHKQRQG+STFA E P+P + S    KQE
Sbjct: 1  MKVRSSVKKMCEFCKTVKRRGRVFVICTANPKHKQRQGMSTFAYEGPAPLISSDMSTKQE 60

Query: 61 IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKK 99
          I PSH  + GLASLIP+K EP++++GWR GLASIL+KK
Sbjct: 61 IMPSHHLQAGLASLIPKKPEPSIMYGWRAGLASILFKK 98

[Close]
BLAST of Carg12128 vs. TrEMBL
Match: tr|A0A2R6P2M6|A0A2R6P2M6_ACTCH (Ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc32596 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+RRGRVYIYC+ANPKHKQRQG+STFA E   P++ S    KQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYIYCTANPKHKQRQGMSTFAYEGTLPAMSSEPIAKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
              +HS R GL SL+P K+EP+++FGWRMGLASIL+ + N
Sbjct: 61  TTLAHSLRAGLPSLMPTKNEPSVMFGWRMGLASILFNQSN 100

[Close]
BLAST of Carg12128 vs. TrEMBL
Match: tr|G7JE29|G7JE29_MEDTR (Ribosomal protein OS=Medicago truncatula OX=3880 GN=11441217 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSL---FSRSEV 60
           MKVR+SVKKMCE+CRT++R+GRVYI C+ANPKHKQRQG+STFA EAPS  L    S S  
Sbjct: 1   MKVRSSVKKMCEYCRTIKRKGRVYIMCTANPKHKQRQGMSTFAYEAPSHQLSVEISSSCA 60

Query: 61  KQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKK 99
            QEI P H+SRTGLAS+IPQ+H  +ML+GWR+GLASIL KK
Sbjct: 61  AQEIKPLHTSRTGLASIIPQRHSLSMLYGWRVGLASILSKK 101

[Close]
BLAST of Carg12128 vs. TrEMBL
Match: tr|A0A1S2YQV4|A0A1S2YQV4_CICAR (Ribosomal protein OS=Cicer arietinum OX=3827 GN=LOC101508273 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.6e-30
Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPS--PSL-FSRSEV 60
           MKVR+SVKKMCE+CRTV+R+GRVY+ C++NPKHKQRQG+STFA+EAPS  PSL  S S  
Sbjct: 1   MKVRSSVKKMCEYCRTVKRKGRVYVLCTSNPKHKQRQGMSTFANEAPSHQPSLEISTSCT 60

Query: 61  KQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKK 99
           K EI P H+ RTGLAS+IPQ+H  +ML+GWR+GLASI+ KK
Sbjct: 61  KHEIGPIHTLRTGLASIIPQRHSLSMLYGWRVGLASIMSKK 101

[Close]
BLAST of Carg12128 vs. TrEMBL
Match: tr|A5AX15|A5AX15_VITVI (Ribosomal protein OS=Vitis vinifera OX=29760 GN=VITISV_039227 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.6e-30
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 0 

Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVR+SVKKMCE+CRTV+RRGRVY+ C+ANPKHKQRQG+STFA E P P + S    KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I  +H  + GLAS+IP+K EP+M++GWR  LAS+L+K+ N
Sbjct: 61  ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQXN 100

The following BLAST results are available for this feature:
BLAST of Carg12128 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933442.18.2e-4999.00uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 unchar... [more]
XP_022971996.11.2e-4796.00uncharacterized protein LOC111470644 [Cucurbita maxima][more]
XP_022987917.12.0e-4288.00uncharacterized protein LOC111485318 [Cucurbita maxima][more]
XP_022960589.11.3e-4187.00uncharacterized protein LOC111461324 [Cucurbita moschata][more]
XP_004150587.16.3e-4186.00PREDICTED: uncharacterized protein LOC101223220 [Cucumis sativus] >XP_004150588.... [more]
BLAST of Carg12128 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20180.11.3e-2760.19Ribosomal protein L36[more]
ATCG00760.12.7e-0968.42ribosomal protein L36[more]
BLAST of Carg12128 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P73300|RL36_SYNY34.6e-1181.5850S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
sp|B3WAJ5|RL36_LACCB1.3e-1081.5850S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ... [more]
sp|Q035A6|RL36_LACP31.3e-1081.5850S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170... [more]
sp|Q88XW3|RL36_LACPL8.7e-1076.3250S ribosomal protein L36 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIM... [more]
sp|A5VLI2|RL36_LACRD8.7e-1076.3250S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ... [more]
BLAST of Carg12128 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2N9GH06|A0A2N9GH06_FAGSY2.3e-3168.37Ribosomal protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26745 PE=3 SV=1[more]
tr|A0A2R6P2M6|A0A2R6P2M6_ACTCH6.7e-3168.00Ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc3... [more]
tr|G7JE29|G7JE29_MEDTR1.5e-3070.30Ribosomal protein OS=Medicago truncatula OX=3880 GN=11441217 PE=2 SV=1[more]
tr|A0A1S2YQV4|A0A1S2YQV4_CICAR5.6e-3069.31Ribosomal protein OS=Cicer arietinum OX=3827 GN=LOC101508273 PE=3 SV=1[more]
tr|A5AX15|A5AX15_VITVI9.6e-3064.00Ribosomal protein OS=Vitis vinifera OX=29760 GN=VITISV_039227 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR035977Ribosomal_L36_sp
IPR000473Ribosomal_L36
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12128-RACarg12128-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000473Ribosomal protein L36TIGRFAMTIGR01022TIGR01022coord: 1..38
e-value: 4.2E-18
score: 63.1
IPR000473Ribosomal protein L36PFAMPF00444Ribosomal_L36coord: 1..38
e-value: 2.1E-22
score: 79.0
IPR000473Ribosomal protein L36PROSITEPS00828RIBOSOMAL_L36coord: 11..37
IPR000473Ribosomal protein L36HAMAPMF_00251Ribosomal_L36coord: 1..38
score: 18.702
NoneNo IPR availablePANTHERPTHR18804FAMILY NOT NAMEDcoord: 1..47
NoneNo IPR availablePRODOMPD002101coord: 9..38
e-value: 8.0E-10
score: 146.0
IPR035977Ribosomal protein L36 superfamilySUPERFAMILYSSF57840Ribosomal protein L36coord: 1..38

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12128Cla012232Watermelon (97103) v1carwmB0042
Carg12128MELO3C010337Melon (DHL92) v3.5.1carmeB0035
Carg12128ClCG06G011210Watermelon (Charleston Gray)carwcgB0043
Carg12128CSPIUnG00330Wild cucumber (PI 183967)carcpiB0046
Carg12128Cucsa.295180Cucumber (Gy14) v1carcgyB0046
Carg12128CmaCh11G005450Cucurbita maxima (Rimu)carcmaB0047
Carg12128CmaCh10G005470Cucurbita maxima (Rimu)carcmaB0044
Carg12128CmoCh11G005430Cucurbita moschata (Rifu)carcmoB0050
Carg12128CmoCh10G005860Cucurbita moschata (Rifu)carcmoB0047
Carg12128Lsi06G009730Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12128Cp4.1LG18g04920Cucurbita pepo (Zucchini)carcpeB0053
Carg12128CsGy1G018910Cucumber (Gy14) v2carcgybB0039
Carg12128MELO3C010337.2Melon (DHL92) v3.6.1carmedB0036
Carg12128CsaV3_1G030220Cucumber (Chinese Long) v3carcucB0041
Carg12128Cla97C06G120390Watermelon (97103) v2carwmbB0037
Carg12128Bhi02G000824Wax gourdcarwgoB0043
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12128Carg09916Silver-seed gourdcarcarB041
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12128Silver-seed gourdcarcarB044
Carg12128Silver-seed gourdcarcarB047
Carg12128Cucumber (Gy14) v2carcgybB0041
Carg12128Cucumber (Gy14) v1carcgyB0041
Carg12128Cucurbita maxima (Rimu)carcmaB0048
Carg12128Cucurbita maxima (Rimu)carcmaB0049
Carg12128Cucurbita moschata (Rifu)carcmoB0051
Carg12128Cucurbita moschata (Rifu)carcmoB0052
Carg12128Cucurbita pepo (Zucchini)carcpeB0049
Carg12128Cucurbita pepo (Zucchini)carcpeB0054
Carg12128Wild cucumber (PI 183967)carcpiB0042
Carg12128Wild cucumber (PI 183967)carcpiB0044
Carg12128Cucumber (Chinese Long) v2carcuB0040
Carg12128Cucumber (Chinese Long) v2carcuB0042
Carg12128Cucumber (Chinese Long) v3carcucB0045
Carg12128Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12128Melon (DHL92) v3.5.1carmeB0039
Carg12128Melon (DHL92) v3.6.1carmedB0040
Carg12128Watermelon (Charleston Gray)carwcgB0037
Carg12128Watermelon (Charleston Gray)carwcgB0039
Carg12128Watermelon (97103) v1carwmB0037
Carg12128Watermelon (97103) v1carwmB0038
Carg12128Watermelon (97103) v2carwmbB0031
Carg12128Watermelon (97103) v2carwmbB0033
Carg12128Wax gourdcarwgoB0037
Carg12128Wax gourdcarwgoB0042