Cla012110 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012110
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cell cycle checkpoint protein rad1 (AHRD V1 **-- E3TG17_ICTPU); contains Interpro domain(s) IPR003021 Repair protein Rad1/Rec1
Location	Chr4 : 16040780 .. 16043492 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCTCGGCGGTGGATACGGAGGCGCCAGATCTAGTTTGCCACCTTGACAACGTCCAAGGCCTGGTGGATGCCTTCACTGCCGTTCGATGGAAGCGCCATCAGGTTATTCCCATTTTTCCTTCCAATTCAGTTTCATTTCCCCTTTTTTTGAACTCTACGGATTCTCTCTCTGTTTGTCTGGATTAATATGCATATTTGTTTGTTATGATATTGATTTGCTTGTTATCACTCAGGACGCCGTAATCGAACTATCGGAACATGGAATCGTTTTGATTGTTGAAGAATCCGGCTGTCTTCAGGCCAAAGTGTATCTGCAGCGTGAGGTTTTGGATTTTGAGTTTAAAATTTTAATCTCCTAGTTATGGATTGATAAATAGATTTTAAACTGTTAATCCAACAGTTAAGTTGGGAAAAGAAATCTTGTGTTTGTGAAGTTGAAAATGATGAATAATTATGATTCAATTTGTACGAAATCTTGCTTAACTGAATTGAAATGCACATTATCATAAGAATTTATGTTCGAAGAAGGAAATTTGATGTTATGCTTGTTTCAGAGTGGCTGAAGTTCTGCTGCTTTTCTACATGCCACAGCTTTTCATTCGTTATGAATACAGTGCACAAGCTCGCCCTCGGTTTGGAGTGAGCTTAGGCATTTTTGTTGATAGTCTGAATACATTTTCTGTTCCTGGACGTTTAACCACCATTGAACTCAAATACCCGGGACCTGACATGCAACTTCTTCTCAAGTATATTCACTTTGCCTCTATGTGCATCACGTTTCATCTCTAATATAAACTCTTTGTTTGGGTTTATATATTGGTAGACAAAACCATTTCAACTATTCTGATGTTAATTTAATTTGATTGGTAAGATGAGAATTGTGTTTGTTTCTGGTTTTTGGGCTTCGTTTGGTATTGATTTGGAGGTGTTAACAATGACAAAGTGATTATGTGGAAATTTAATCGTTTTTAGTATTTGGTTAAACAAATTACCTTGATTTGTGAAATCTAGTTAACGTAGTTTTAGAGACTGGCTTCCTAAAAAATTGGATGGCTCTCTAACCAACATTTTATAAATAACAACAATCTCAAACTAAGCCTACTATGAGCGATGTAAGGTATCATCTTATATTGGCGAACCTCTAAGATATTCTATCAACTTGTTAAACCGTGTGATGATAAATTTTTATGTCCCTGTTTATTTTTTTATTATTTATTATTATTATTATTATTTTCGAAACGATATCTATGTATTCTATAGCGAAGAACTGTAAGGGTACTAATAGGGGTTTATGGGTCAGAGTAATATGTTATTAGTAAGGGCATAAGGGTAATTAGTTAGAGAGTTAGTGTATTTTGTTATAATTAGAGGGAGAGGGACGGAGGGAAGACAAAACAATTGGTGGAGTTATTTTGGGTTTGGGTTAACATACTCAAGAGAGGAGACACCACTTGATTTATCTAGTAGTTTTCCATCCTCCAATATATTTCCGATCTTGATTCCTGTCAGGTGGTACCCTAACAAGAGCTTGTTAGTATCTTCATATTTTATGAATTCAAACTCTGGAACTGGAGAAAACCAATATAAATAGACTAATTAGAATCTATTTAGTTTTTCTCCTATGATGGAACAATTTTTATGCAGATCTGAGGAGAAAATACAGTTCAAATGTAAGTAACTTACTCCAGGTTTATTATCAGGTCAGTCGATTCGTTAGATGCTTGCATTTATGCAGAGATCAGAACCAGAATCCCAGATACGATCTCATGGGATTACAATTTTGAACCTGCAGGAAGCAGCCCACTCAGTTTCACTGTCAAGGTATGAGGTCATATTATAATTAACTTTGAAACCTTTTTATACATGCCAAAGATGATATCTGATGTAGTTCCTAAAAGACATAAATCTGAGAATACTTTGAAGGCAAGAGAACAAAACGAAGGAATAAGTTATGAATCTAAATATTATTATTACAGATAATCAAAGAAAAATAAGTGAAGCTTGTTGTTTGAATGCTAGTCTGCAGCACTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGTGTCCTGATAGCCCTACAACCAGATCCCCCTTCGGTCACCTTCAAAGGCGAAGGCCATGGAGATTTGCAGGTATGGTTTATCATAAACAAGCTGAAATGTGAAATCCTTGTAACGTAGTAAGAATATTAATACAACCTCCCAAAACGAGCATAGCTCAACTGGCATCAAGCAAGTACTATTAATTTTGAGGTTAGAGATTCAATCCTACCTATCCTTACTTCCTACCCAGGTGGATTTCATGTATTATGCAAATACCGATCTTCTGATCTCCTTCCATTGCGATCGGCAAGTGTCCTACAGGTAACATGGTTCCTTCACAAAGTTAAACACATCAAATCCTAGCACATACTTCACTTGCTGCAATTTTCTGTTTCTTTTTGATCTTTAATGAGTTAGGTACAAATACAAGTTTCTCCGTGCGACGACTTCCAACATACCGAGCAGTGTGATAAGAGAAAACAGGGGAAGCAAATTGACTATTGGGAGAGGAGGAATGCTAAAAGTTCAGCACCTTGTTTCTGTCGCAAAACCATCCACTTTACACCCACAAATAGATTCTGCTGGCTATCAGCAACCTAGTAGAATTGCTTTCATTGAGTTCTTTGTAAAACCAGAAGAAGATGCCACAAATGATTAG

mRNA sequence

ATGAGCTCCTCGGCGGTGGATACGGAGGCGCCAGATCTAGTTTGCCACCTTGACAACGTCCAAGGCCTGGTGGATGCCTTCACTGCCGTTCGATGGAAGCGCCATCAGGACGCCGTAATCGAACTATCGGAACATGGAATCGTTTTGATTGTTGAAGAATCCGGCTGTCTTCAGGCCAAAGTGTATCTGCAGCGTGAGCTTTTCATTCGTTATGAATACAGTGCACAAGCTCGCCCTCGGTTTGGAGTGAGCTTAGGCATTTTTGTTGATAGTCTGAATACATTTTCTGTTCCTGGACGTTTAACCACCATTGAACTCAAATACCCGGGACCTGACATGCAACTTCTTCTCAAGTCAGTCGATTCGTTAGATGCTTGCATTTATGCAGAGATCAGAACCAGAATCCCAGATACGATCTCATGGGATTACAATTTTGAACCTGCAGGAAGCAGCCCACTCAGTTTCACTGTCAAGTCTGCAGCACTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGTGTCCTGATAGCCCTACAACCAGATCCCCCTTCGGTCACCTTCAAAGGCGAAGGCCATGGAGATTTGCAGGTGGATTTCATGTATTATGCAAATACCGATCTTCTGATCTCCTTCCATTGCGATCGGCAAGTGTCCTACAGGTACAAATACAAGTTTCTCCGTGCGACGACTTCCAACATACCGAGCAGTGTGATAAGAGAAAACAGGGGAAGCAAATTGACTATTGGGAGAGGAGGAATGCTAAAAGTTCAGCACCTTGTTTCTGTCGCAAAACCATCCACTTTACACCCACAAATAGATTCTGCTGGCTATCAGCAACCTAGTAGAATTGCTTTCATTGAGTTCTTTGTAAAACCAGAAGAAGATGCCACAAATGATTAG

Coding sequence (CDS)

ATGAGCTCCTCGGCGGTGGATACGGAGGCGCCAGATCTAGTTTGCCACCTTGACAACGTCCAAGGCCTGGTGGATGCCTTCACTGCCGTTCGATGGAAGCGCCATCAGGACGCCGTAATCGAACTATCGGAACATGGAATCGTTTTGATTGTTGAAGAATCCGGCTGTCTTCAGGCCAAAGTGTATCTGCAGCGTGAGCTTTTCATTCGTTATGAATACAGTGCACAAGCTCGCCCTCGGTTTGGAGTGAGCTTAGGCATTTTTGTTGATAGTCTGAATACATTTTCTGTTCCTGGACGTTTAACCACCATTGAACTCAAATACCCGGGACCTGACATGCAACTTCTTCTCAAGTCAGTCGATTCGTTAGATGCTTGCATTTATGCAGAGATCAGAACCAGAATCCCAGATACGATCTCATGGGATTACAATTTTGAACCTGCAGGAAGCAGCCCACTCAGTTTCACTGTCAAGTCTGCAGCACTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGTGTCCTGATAGCCCTACAACCAGATCCCCCTTCGGTCACCTTCAAAGGCGAAGGCCATGGAGATTTGCAGGTGGATTTCATGTATTATGCAAATACCGATCTTCTGATCTCCTTCCATTGCGATCGGCAAGTGTCCTACAGGTACAAATACAAGTTTCTCCGTGCGACGACTTCCAACATACCGAGCAGTGTGATAAGAGAAAACAGGGGAAGCAAATTGACTATTGGGAGAGGAGGAATGCTAAAAGTTCAGCACCTTGTTTCTGTCGCAAAACCATCCACTTTACACCCACAAATAGATTCTGCTGGCTATCAGCAACCTAGTAGAATTGCTTTCATTGAGTTCTTTGTAAAACCAGAAGAAGATGCCACAAATGATTAG

Protein sequence

MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSVDSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIALQPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEEDATND

Homology

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BLAST of Cla012110 vs. Swiss-Prot
Match: RAD1_MOUSE (Cell cycle checkpoint protein RAD1 OS=Mus musculus GN=Rad1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-16
Identity = 76/292 (26.03%), Postives = 136/292 (46.58%), Query Frame = 1


Query: 13  LVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYE 72
           LV  LDNV+ L     A+ ++ H  A    +++GI + VE + C+QA  ++Q ++F  + 
Sbjct: 17  LVASLDNVRNLSTVLKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQADVFQEFV 76

Query: 73  YSAQARPRFGVSLGIFVDSLNTFS---VPGRLTTIELKYPGPDMQLLLKSVDSLDACIYA 132
              ++   F ++L I +D L+ F     PG LT + + Y G    L+L  ++        
Sbjct: 77  IQEES-VTFRINLTILLDCLSIFGSSPTPGTLTALRMCYQGYGHPLML-FLEEGGVVTVC 136

Query: 133 EIRTRIPD-TISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIALQPDPPSV- 192
           +I T+ P+ T+ +D+      +  +   ++S  L+EA  +L+  G  + I + PD P   
Sbjct: 137 KITTQEPEETLDFDFCSTNVMNKII---LQSEGLREAFSELDMTGDVLQITVSPDKPYFR 196

Query: 193 --TFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVIRENRG 252
             TF   G+  L     Y  ++DL+ +FHCD+    RYK   L+ +T  +  S     + 
Sbjct: 197 LSTFGNAGNSHLD----YPKDSDLVEAFHCDKTQVNRYKLSLLKPSTKALALSC----KV 256

Query: 253 SKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           S  T  R G L +Q+++                  +  +I F+E++  P+E+
Sbjct: 257 SIRTDNR-GFLSLQYMIR----------------NEDGQICFVEYYCCPDEE 276

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BLAST of Cla012110 vs. Swiss-Prot
Match: RAD1_HUMAN (Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15
Identity = 71/291 (24.40%), Postives = 139/291 (47.77%), Query Frame = 1


Query: 13  LVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYE 72
           LV  LDNV+ L     A+ ++ H  A    +++GI + VE + C+QA  ++Q  +F  ++
Sbjct: 17  LVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFK 76

Query: 73  YSAQARPRFGVSLGIFVDSLNTFS---VPGRLTTIELKYPGPDMQLLLKSVDSLDACIYA 132
              ++   F ++L + +D L+ F    +PG LT + + Y G    L+L  ++        
Sbjct: 77  VQEES-VTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLML-FLEEGGVVTVC 136

Query: 133 EIRTRIP-DTISWDYNFEPAGSSPLS-FTVKSAALKEAIDDLEWPGSSVLIALQPDPPSV 192
           +I T+ P +T+ +D+      ++ ++   ++S  L+EA  +L+     + I + PD P  
Sbjct: 137 KINTQEPEETLDFDF----CSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYF 196

Query: 193 TFKGEGH-GDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVIRENRGS 252
                G+ G   +D  Y  ++DL+ +FHC++    RYK   L+ +T     +++   + S
Sbjct: 197 RLSTFGNAGSSHLD--YPKDSDLMEAFHCNQTQVNRYKISLLKPST----KALVLSCKVS 256

Query: 253 KLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
             T  R G L +Q+++                  +  +I F+E++  P+E+
Sbjct: 257 IRTDNR-GFLSLQYMIR----------------NEDGQICFVEYYCCPDEE 276

[Close]

BLAST of Cla012110 vs. Swiss-Prot
Match: RAD1_PONAB (Cell cycle checkpoint protein RAD1 OS=Pongo abelii GN=RAD1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15
Identity = 71/291 (24.40%), Postives = 139/291 (47.77%), Query Frame = 1


Query: 13  LVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYE 72
           LV  LDNV+ L     A+ ++ H  A    +++GI + VE + C+QA  ++Q  +F  ++
Sbjct: 17  LVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFK 76

Query: 73  YSAQARPRFGVSLGIFVDSLNTFS---VPGRLTTIELKYPGPDMQLLLKSVDSLDACIYA 132
              ++   F ++L + +D L+ F    +PG LT + + Y G    L+L  ++        
Sbjct: 77  VQEES-VTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLML-FLEEGGVVTVC 136

Query: 133 EIRTRIP-DTISWDYNFEPAGSSPLS-FTVKSAALKEAIDDLEWPGSSVLIALQPDPPSV 192
           +I T+ P +T+ +D+      ++ ++   ++S  L+EA  +L+     + I + PD P  
Sbjct: 137 KINTQEPEETLDFDF----CSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYF 196

Query: 193 TFKGEGH-GDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVIRENRGS 252
                G+ G   +D  Y  ++DL+ +FHC++    RYK   L+ +T     +++   + S
Sbjct: 197 RLSTFGNAGSSHLD--YPKDSDLMEAFHCNQTQVNRYKISLLKPST----KALVLSCKVS 256

Query: 253 KLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
             T  R G L +Q+++                  +  +I F+E++  P+E+
Sbjct: 257 IRTDNR-GFLSLQYMIR----------------NEDGQICFVEYYCCPDEE 276

[Close]

BLAST of Cla012110 vs. TrEMBL
Match: A0A061G5S4_THECC (Damaged DNA binding,exodeoxyribonuclease IIIs isoform 1 OS=Theobroma cacao GN=TCM_016562 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 2.0e-146
Identity = 253/297 (85.19%), Postives = 280/297 (94.28%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSA++ EAPDLVC LDNVQG+VDA +AVRWKRHQDAV+ELSEHG+VLIVE++GCLQAK
Sbjct: 1   MSSSALEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSEHGVVLIVEDTGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELFIRYEY+A+ RPRFGVSLG+FVD LNTFS+PGR + IE++YPGPDMQLL+KSV
Sbjct: 61  VYLQRELFIRYEYNAEGRPRFGVSLGLFVDCLNTFSLPGRSSMIEIQYPGPDMQLLVKSV 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDTISWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWPGSS+ I L
Sbjct: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQILL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QP PP VTFKGEGHGDLQ+DFMYY NTDLLI+FHCDRQVSYRYKYKFL ATTSN+PSSVI
Sbjct: 181 QPVPPCVTFKGEGHGDLQIDFMYYVNTDLLIAFHCDRQVSYRYKYKFLHATTSNLPSSVI 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGGMLKVQHLVSVAK +T HPQIDSA +QQPSRIA+IEFFVKPE D
Sbjct: 241 KDNRGSKLTIGRGGMLKVQHLVSVAKLATSHPQIDSARHQQPSRIAYIEFFVKPEVD 297

[Close]

BLAST of Cla012110 vs. TrEMBL
Match: V4T9T9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032236mg PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 3.9e-145
Identity = 250/297 (84.18%), Postives = 274/297 (92.26%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSA+D E+PDLVC LDNVQGLVDA +AVRWKRHQDAVIELSEHGI+LIVEE+GCLQAK
Sbjct: 1   MSSSAMDAESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELF+RYEYSAQ RPRFGVSLG+F D LNTFS PG  + IE++YPGPDMQLL+KSV
Sbjct: 61  VYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSV 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DS DACIYAE+RTRIPD ISWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWPGSS+ I L
Sbjct: 121 DSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QP PPSV+FKGEGHGDLQ+DFMYY NTDLLI+FHCDR+VSYRYKYKFLRATTSN+P SVI
Sbjct: 181 QPVPPSVSFKGEGHGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGSVI 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKL IGRGGMLKVQHLVSVA+ S  HP  DSAGYQQPSRIA+IEFFVKPEED
Sbjct: 241 KDNRGSKLIIGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSRIAYIEFFVKPEED 297

[Close]

BLAST of Cla012110 vs. TrEMBL
Match: B9MU53_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02150g PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 6.6e-145
Identity = 249/297 (83.84%), Postives = 276/297 (92.93%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSA++ +  DLVC LDNVQG+VDA + VRWKRHQDAV+ELSEHGIVLIVEE+GCLQAK
Sbjct: 1   MSSSAIEADTSDLVCQLDNVQGIVDALSTVRWKRHQDAVVELSEHGIVLIVEETGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQ+ELFIRYEY+AQ RPRFG+SLG+FVD LNTFSVPG  +TIE++YPGPDMQLL+KS 
Sbjct: 61  VYLQKELFIRYEYTAQGRPRFGLSLGLFVDCLNTFSVPGHSSTIEIRYPGPDMQLLIKSA 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLD CIYAEIRTRIP+TISWDYNFEPAGS+PLSFTVKSAALKEAIDDLEWPGS + I L
Sbjct: 121 DSLDDCIYAEIRTRIPETISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWPGSCIQIIL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           +P PPSVTF+GEGHGDLQ+DFMYYANTDLLI+FHCD QVSYRYKYKFLRATTSN+PSSV 
Sbjct: 181 KPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHQVSYRYKYKFLRATTSNMPSSVT 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGGMLKVQHLVSVA+PST H  IDSAGYQQPSRIA+IEFFVKPEED
Sbjct: 241 KDNRGSKLTIGRGGMLKVQHLVSVARPSTSHQHIDSAGYQQPSRIAYIEFFVKPEED 297

[Close]

BLAST of Cla012110 vs. TrEMBL
Match: A0A0B0MUS8_GOSAR (Syntaxin-22-like protein OS=Gossypium arboreum GN=F383_21987 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.1e-144
Identity = 248/297 (83.50%), Postives = 277/297 (93.27%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSAV+ EAPDLVC LDNVQG+VDA +AVRWKRHQDAV+ELSEHG+VLIVE++GCLQAK
Sbjct: 333 MSSSAVEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSEHGVVLIVEDTGCLQAK 392

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELF+RYEY A+ RPRFGVSLG+FVD LN+FS PGR + IE++YPGPDMQLL+KSV
Sbjct: 393 VYLQRELFVRYEYHAEGRPRFGVSLGLFVDCLNSFSAPGRSSMIEIQYPGPDMQLLIKSV 452

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDTISWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWPGSS+ I L
Sbjct: 453 DSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQINL 512

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QPDPP +TFKGEGHGDLQ+DF YY NTDL+I+FHCD QVSYRYKYKFLRATTSN+PSSVI
Sbjct: 513 QPDPPCITFKGEGHGDLQIDFTYYVNTDLVIAFHCDCQVSYRYKYKFLRATTSNLPSSVI 572

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGGMLKVQHLVSVA+ +T HP IDSAG+QQPSRIA+IEFFVK E D
Sbjct: 573 KDNRGSKLTIGRGGMLKVQHLVSVARSATSHPHIDSAGHQQPSRIAYIEFFVKSEVD 629

[Close]

BLAST of Cla012110 vs. TrEMBL
Match: A0A0B0NF93_GOSAR (Syntaxin-22-like protein OS=Gossypium arboreum GN=F383_12446 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.1e-144
Identity = 248/297 (83.50%), Postives = 277/297 (93.27%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSAV+ EAPDLVC LDNVQG+VDA +AVRWKRHQDAV+ELSEHG+VLIVE++GCLQAK
Sbjct: 296 MSSSAVEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSEHGVVLIVEDTGCLQAK 355

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELF+RYEY A+ RPRFGVSLG+FVD LN+FS PGR + IE++YPGPDMQLL+KSV
Sbjct: 356 VYLQRELFVRYEYHAEGRPRFGVSLGLFVDCLNSFSAPGRSSMIEIQYPGPDMQLLIKSV 415

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDTISWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWPGSS+ I L
Sbjct: 416 DSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQINL 475

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QPDPP +TFKGEGHGDLQ+DF YY NTDL+I+FHCD QVSYRYKYKFLRATTSN+PSSVI
Sbjct: 476 QPDPPCITFKGEGHGDLQIDFTYYVNTDLVIAFHCDCQVSYRYKYKFLRATTSNLPSSVI 535

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGGMLKVQHLVSVA+ +T HP IDSAG+QQPSRIA+IEFFVK E D
Sbjct: 536 KDNRGSKLTIGRGGMLKVQHLVSVARSATSHPHIDSAGHQQPSRIAYIEFFVKSEVD 592

[Close]

BLAST of Cla012110 vs. NCBI nr
Match: gi|659082765|ref|XP_008442021.1| (PREDICTED: cell cycle checkpoint protein RAD1 [Cucumis melo])

HSP 1 Score: 582.8 bits (1501), Expect = 3.5e-163
Identity = 289/301 (96.01%), Postives = 295/301 (98.01%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSAVDTEAPDLVCH DNVQGLVDAFTAVRWKRHQDA+IELSEHGIVLIVEESGCLQAK
Sbjct: 1   MSSSAVDTEAPDLVCHFDNVQGLVDAFTAVRWKRHQDALIELSEHGIVLIVEESGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRL+TIELKYPGPDMQLLLK+V
Sbjct: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLSTIELKYPGPDMQLLLKTV 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL
Sbjct: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QP PPSVTFK EGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI
Sbjct: 181 QPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEEDATN 300
           RENRGSKLTIGRGG+LKVQHLVSVAKPST H  IDSAGYQQPSRIAFIEFFVKPEED++N
Sbjct: 241 RENRGSKLTIGRGGLLKVQHLVSVAKPSTSHTHIDSAGYQQPSRIAFIEFFVKPEEDSSN 300

Query: 301 D 302
           D
Sbjct: 301 D 301

[Close]

BLAST of Cla012110 vs. NCBI nr
Match: gi|449462759|ref|XP_004149108.1| (PREDICTED: uncharacterized protein LOC101219270 [Cucumis sativus])

HSP 1 Score: 577.8 bits (1488), Expect = 1.1e-161
Identity = 286/301 (95.02%), Postives = 293/301 (97.34%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSAVDTEAPDL+CH DNVQGLVDAFT+VRWKRHQDAVIELSEHGIVLIVEESGCLQAK
Sbjct: 1   MSSSAVDTEAPDLLCHFDNVQGLVDAFTSVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRL+TIELKYPGPDMQLLLK+V
Sbjct: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLSTIELKYPGPDMQLLLKTV 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL
Sbjct: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QP PPSVTFK EGHGDLQVDFMYYANTDLLISFHCD+QVSYRYKYKFLRATTSNIPSSVI
Sbjct: 181 QPSPPSVTFKAEGHGDLQVDFMYYANTDLLISFHCDQQVSYRYKYKFLRATTSNIPSSVI 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEEDATN 300
           RENRGSKLTIGRGG+LKVQHLVSV KPST H  IDSAGYQQPSRIAFIEFFVKPEED+ N
Sbjct: 241 RENRGSKLTIGRGGLLKVQHLVSVGKPSTSHTHIDSAGYQQPSRIAFIEFFVKPEEDSPN 300

Query: 301 D 302
           D
Sbjct: 301 D 301

[Close]

BLAST of Cla012110 vs. NCBI nr
Match: gi|590679696|ref|XP_007040654.1| (Damaged DNA binding,exodeoxyribonuclease IIIs isoform 1 [Theobroma cacao])

HSP 1 Score: 526.6 bits (1355), Expect = 2.9e-146
Identity = 253/297 (85.19%), Postives = 280/297 (94.28%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSA++ EAPDLVC LDNVQG+VDA +AVRWKRHQDAV+ELSEHG+VLIVE++GCLQAK
Sbjct: 1   MSSSALEAEAPDLVCQLDNVQGMVDALSAVRWKRHQDAVVELSEHGVVLIVEDTGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELFIRYEY+A+ RPRFGVSLG+FVD LNTFS+PGR + IE++YPGPDMQLL+KSV
Sbjct: 61  VYLQRELFIRYEYNAEGRPRFGVSLGLFVDCLNTFSLPGRSSMIEIQYPGPDMQLLVKSV 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDTISWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWPGSS+ I L
Sbjct: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQILL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QP PP VTFKGEGHGDLQ+DFMYY NTDLLI+FHCDRQVSYRYKYKFL ATTSN+PSSVI
Sbjct: 181 QPVPPCVTFKGEGHGDLQIDFMYYVNTDLLIAFHCDRQVSYRYKYKFLHATTSNLPSSVI 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGGMLKVQHLVSVAK +T HPQIDSA +QQPSRIA+IEFFVKPE D
Sbjct: 241 KDNRGSKLTIGRGGMLKVQHLVSVAKLATSHPQIDSARHQQPSRIAYIEFFVKPEVD 297

[Close]

BLAST of Cla012110 vs. NCBI nr
Match: gi|743809515|ref|XP_011018520.1| (PREDICTED: uncharacterized protein LOC105121539 [Populus euphratica])

HSP 1 Score: 524.2 bits (1349), Expect = 1.5e-145
Identity = 250/297 (84.18%), Postives = 277/297 (93.27%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           MSSSA++ +  DLVC LDNVQG+VDA + VRWKRHQDAV+ELSEHG+VLIVEE+GCLQAK
Sbjct: 1   MSSSAIEADTSDLVCQLDNVQGIVDALSTVRWKRHQDAVVELSEHGVVLIVEETGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQ+ELFIRYEY+AQ RPRFG+SLG+FVD LNTFSVPG  +TIE++YPGPDMQLL+KS 
Sbjct: 61  VYLQKELFIRYEYTAQGRPRFGLSLGLFVDCLNTFSVPGHSSTIEIRYPGPDMQLLIKSA 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLD CIYAEIRTRIP+TISWDYNFEPAGS+PLSFTVKSAALKEAIDDLEWPGSS+ I L
Sbjct: 121 DSLDDCIYAEIRTRIPETISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWPGSSIQIIL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           +P PPSVTF+GEGHGDLQ+DFMYYANTDLLI+FHCD QVSYRYKYKFLRATTSNIPSSV 
Sbjct: 181 KPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHQVSYRYKYKFLRATTSNIPSSVT 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGGMLKVQHLVSVA+PST H  IDSAGYQQPSRIA+IEFFVKPEED
Sbjct: 241 KDNRGSKLTIGRGGMLKVQHLVSVARPSTSHQHIDSAGYQQPSRIAYIEFFVKPEED 297

[Close]

BLAST of Cla012110 vs. NCBI nr
Match: gi|694419519|ref|XP_009337717.1| (PREDICTED: uncharacterized protein LOC103930144 [Pyrus x bretschneideri])

HSP 1 Score: 523.1 bits (1346), Expect = 3.3e-145
Identity = 247/297 (83.16%), Postives = 277/297 (93.27%), Query Frame = 1


Query: 1   MSSSAVDTEAPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAK 60
           M+SS+   E PDLVC +DN QG+VDA T VRWKR QDAV+ELSEHG+VLIVEE+GCLQAK
Sbjct: 1   MNSSSPAEEPPDLVCQIDNAQGMVDALTTVRWKRQQDAVVELSEHGVVLIVEETGCLQAK 60

Query: 61  VYLQRELFIRYEYSAQARPRFGVSLGIFVDSLNTFSVPGRLTTIELKYPGPDMQLLLKSV 120
           VYLQRELF RYEY+ Q RPRFG+SLG+FVD LNTFSVPG+ T +E++YPGPDMQLLLKSV
Sbjct: 61  VYLQRELFTRYEYNGQGRPRFGISLGLFVDCLNTFSVPGQSTILEMRYPGPDMQLLLKSV 120

Query: 121 DSLDACIYAEIRTRIPDTISWDYNFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSVLIAL 180
           DSLDACIYAEIRTRIPDT+SWDYNFEPAGS+PL+FTVKSAALKEAIDDLEWPGSS+ I+L
Sbjct: 121 DSLDACIYAEIRTRIPDTVSWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQISL 180

Query: 181 QPDPPSVTFKGEGHGDLQVDFMYYANTDLLISFHCDRQVSYRYKYKFLRATTSNIPSSVI 240
           QP PP+VTF+GEGHGDLQ+D MYY NTDLL++FHCDRQVSYRYKYKFLRATTSNIPSSVI
Sbjct: 181 QPVPPTVTFRGEGHGDLQIDLMYYVNTDLLVAFHCDRQVSYRYKYKFLRATTSNIPSSVI 240

Query: 241 RENRGSKLTIGRGGMLKVQHLVSVAKPSTLHPQIDSAGYQQPSRIAFIEFFVKPEED 298
           ++NRGSKLTIGRGG+LKVQHLVSVA+PST HP+IDSAGYQQPSRIA+IEFFVKPEED
Sbjct: 241 KDNRGSKLTIGRGGLLKVQHLVSVARPSTSHPRIDSAGYQQPSRIAYIEFFVKPEED 297

The following BLAST results are available for this feature:

BLAST of Cla012110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAD1_MOUSE	1.7e-16	26.03	Cell cycle checkpoint protein RAD1 OS=Mus musculus GN=Rad1 PE=1 SV=1	[more]
RAD1_HUMAN	3.2e-15	24.40	Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1	[more]
RAD1_PONAB	3.2e-15	24.40	Cell cycle checkpoint protein RAD1 OS=Pongo abelii GN=RAD1 PE=2 SV=1	[more]

BLAST of Cla012110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G5S4_THECC	2.0e-146	85.19	Damaged DNA binding,exodeoxyribonuclease IIIs isoform 1 OS=Theobroma cacao GN=TC...	[more]
V4T9T9_9ROSI	3.9e-145	84.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032236mg PE=4 SV=1	[more]
B9MU53_POPTR	6.6e-145	83.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02150g PE=4 SV=1	[more]
A0A0B0MUS8_GOSAR	1.1e-144	83.50	Syntaxin-22-like protein OS=Gossypium arboreum GN=F383_21987 PE=4 SV=1	[more]
A0A0B0NF93_GOSAR	1.1e-144	83.50	Syntaxin-22-like protein OS=Gossypium arboreum GN=F383_12446 PE=3 SV=1	[more]

BLAST of Cla012110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082765\|ref\|XP_008442021.1\|	3.5e-163	96.01	PREDICTED: cell cycle checkpoint protein RAD1 [Cucumis melo]	[more]
gi\|449462759\|ref\|XP_004149108.1\|	1.1e-161	95.02	PREDICTED: uncharacterized protein LOC101219270 [Cucumis sativus]	[more]
gi\|590679696\|ref\|XP_007040654.1\|	2.9e-146	85.19	Damaged DNA binding,exodeoxyribonuclease IIIs isoform 1 [Theobroma cacao]	[more]
gi\|743809515\|ref\|XP_011018520.1\|	1.5e-145	84.18	PREDICTED: uncharacterized protein LOC105121539 [Populus euphratica]	[more]
gi\|694419519\|ref\|XP_009337717.1\|	3.3e-145	83.16	PREDICTED: uncharacterized protein LOC103930144 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003021	Rad1_Rec1_Rad17

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000077	DNA damage checkpoint
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0061025	membrane fusion
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030896	checkpoint clamp complex
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003684	damaged DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012110	Cla012110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003021	Rad1/Rec1/Rad17	PRINTS	PR01245	RAD1REC1	coord: 15..32 score: 5.3E-6coord: 59..75 score: 5.3E-6coord: 223..240 score: 5.3E-6coord: 282..297 score: 5.
IPR003021	Rad1/Rec1/Rad17	PANTHER	PTHR10870	CELL CYCLE CHECKPOINT PROTEIN RAD1	coord: 1..297 score: 6.3E
IPR003021	Rad1/Rec1/Rad17	PFAM	PF02144	Rad1	coord: 14..238 score: 1.4
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 22..237 score: 1.
None	No IPR available	unknown	SSF55979	DNA clamp	coord: 154..261 score: 2.27

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012110	Cla97C04G072110	Watermelon (97103) v2	wmwmbB291
Cla012110	Csa4G188390	Cucumber (Chinese Long) v2	cuwmB339
Cla012110	MELO3C008839	Melon (DHL92) v3.5.1	mewmB585
Cla012110	ClCG04G005520	Watermelon (Charleston Gray)	wcgwmB255
Cla012110	CSPI04G11000	Wild cucumber (PI 183967)	cpiwmB346
Cla012110	Cucsa.334680	Cucumber (Gy14) v1	cgywmB604
Cla012110	Lsi01G016880	Bottle gourd (USVL1VR-Ls)	lsiwmB145
Cla012110	CsGy4G010540	Cucumber (Gy14) v2	cgybwmB315
Cla012110	MELO3C008839.2	Melon (DHL92) v3.6.1	medwmB573
Cla012110	CsaV3_4G012030	Cucumber (Chinese Long) v3	cucwmB356
Cla012110	Bhi03G001859	Wax gourd	wgowmB439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None