Cla011857 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011857
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Lactoylglutathione lyase family protein (AHRD V1 ***- D7MIT1_ARALL)
Location	Chr11 : 2426834 .. 2426998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAGCATCTTTTAGGTGGATACTTCAATTACACAAGGACGTCCCCAAAGCGGCTAGATTCTACTCTGAAGGCTTGGACTTCACTGTTAATGTCTGCACTCTTCGTTGGGCGGAGCTTCAATCTGGGCCTCTCAAACTCGCTCTCATGCAATCCAAGTAG

mRNA sequence

ATGGCAGCAGCATCTTTTAGGTGGATACTTCAATTACACAAGGACGTCCCCAAAGCGGCTAGATTCTACTCTGAAGGCTTGGACTTCACTGTTAATGTCTGCACTCTTCGTTGGGCGGAGCTTCAATCTGGGCCTCTCAAACTCGCTCTCATGCAATCCAAGTAG

Coding sequence (CDS)

ATGGCAGCAGCATCTTTTAGGTGGATACTTCAATTACACAAGGACGTCCCCAAAGCGGCTAGATTCTACTCTGAAGGCTTGGACTTCACTGTTAATGTCTGCACTCTTCGTTGGGCGGAGCTTCAATCTGGGCCTCTCAAACTCGCTCTCATGCAATCCAAGTAG

Protein sequence

MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSK

Homology

[Close]

BLAST of Cla011857 vs. TrEMBL
Match: A0A067GM39_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040429mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1   MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
           MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS
Sbjct: 52  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 104

[Close]

BLAST of Cla011857 vs. TrEMBL
Match: A0A0A0LQS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404930 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 53

[Close]

BLAST of Cla011857 vs. TrEMBL
Match: V4SXQ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022889mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-21
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRWILQLHKDVPKAARFYSEGLDFT+NVCTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTLNVCTLRWAELQSGPLKLALMQS 53

[Close]

BLAST of Cla011857 vs. TrEMBL
Match: M5WNW8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013492mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.1e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRW+LQLHKDVPKAARFYSEGLDFTV+VCTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWVLQLHKDVPKAARFYSEGLDFTVDVCTLRWAELQSGPLKLALMQS 53

[Close]

BLAST of Cla011857 vs. TrEMBL
Match: A0A061G4W9_THECC (Lactoylglutathione lyase / glyoxalase I family protein OS=Theobroma cacao GN=TCM_016381 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-20
Identity = 49/53 (92.45%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRWILQLHKDVPKAA+FYS+GLDF+VN+CTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWILQLHKDVPKAAKFYSQGLDFSVNICTLRWAELQSGPLKLALMQS 53

[Close]

BLAST of Cla011857 vs. NCBI nr
Match: gi|659081334|ref|XP_008441279.1| (PREDICTED: uncharacterized protein LOC103485457 isoform X4 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1   MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSK 55
           MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSK
Sbjct: 130 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSK 183

[Close]

BLAST of Cla011857 vs. NCBI nr
Match: gi|641857661|gb|KDO76406.1| (hypothetical protein CISIN_1g040429mg [Citrus sinensis])

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1   MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
           MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS
Sbjct: 52  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 104

[Close]

BLAST of Cla011857 vs. NCBI nr
Match: gi|659081338|ref|XP_008441281.1| (PREDICTED: uncharacterized protein LOC103485457 isoform X6 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 53

[Close]

BLAST of Cla011857 vs. NCBI nr
Match: gi|778673139|ref|XP_011649931.1| (PREDICTED: uncharacterized protein LOC101214305 isoform X2 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 53

[Close]

BLAST of Cla011857 vs. NCBI nr
Match: gi|568845171|ref|XP_006476451.1| (PREDICTED: uncharacterized protein LOC102627358 [Citrus sinensis])

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 54
          MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS
Sbjct: 1  MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS 53

The following BLAST results are available for this feature:

BLAST of Cla011857 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067GM39_CITSI	6.3e-22	100.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040429mg PE=4 SV=1	[more]
A0A0A0LQS3_CUCSA	6.3e-22	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404930 PE=4 SV=1	[more]
V4SXQ2_9ROSI	1.4e-21	98.11	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022889mg PE=4 SV=1	[more]
M5WNW8_PRUPE	3.1e-21	96.23	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013492mg PE=4 SV=1	[more]
A0A061G4W9_THECC	1.2e-20	92.45	Lactoylglutathione lyase / glyoxalase I family protein OS=Theobroma cacao GN=TCM...	[more]

BLAST of Cla011857 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081334\|ref\|XP_008441279.1\|	2.4e-22	100.00	PREDICTED: uncharacterized protein LOC103485457 isoform X4 [Cucumis melo]	[more]
gi\|641857661\|gb\|KDO76406.1\|	9.0e-22	100.00	hypothetical protein CISIN_1g040429mg [Citrus sinensis]	[more]
gi\|659081338\|ref\|XP_008441281.1\|	9.0e-22	100.00	PREDICTED: uncharacterized protein LOC103485457 isoform X6 [Cucumis melo]	[more]
gi\|778673139\|ref\|XP_011649931.1\|	9.0e-22	100.00	PREDICTED: uncharacterized protein LOC101214305 isoform X2 [Cucumis sativus]	[more]
gi\|568845171\|ref\|XP_006476451.1\|	9.0e-22	100.00	PREDICTED: uncharacterized protein LOC102627358 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011857	Cla011857.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31071	FAMILY NOT NAMED	coord: 1..53 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011857	Cla97C11G215790	Watermelon (97103) v2	wmwmbB363
Cla011857	Csa2G404930	Cucumber (Chinese Long) v2	cuwmB164
Cla011857	ClCG11G007680	Watermelon (Charleston Gray)	wcgwmB104
Cla011857	Cucsa.087980	Cucumber (Gy14) v1	cgywmB101
Cla011857	CmaCh04G029890	Cucurbita maxima (Rimu)	cmawmB727
Cla011857	CmoCh04G031100	Cucurbita moschata (Rifu)	cmowmB723
Cla011857	Lsi03G004210	Bottle gourd (USVL1VR-Ls)	lsiwmB275
Cla011857	Cp4.1LG01g25830	Cucurbita pepo (Zucchini)	cpewmB454
Cla011857	Carg06062	Silver-seed gourd	carwmB0021
Cla011857	CsaV3_2G033880	Cucumber (Chinese Long) v3	cucwmB176
Cla011857	Bhi04G002012	Wax gourd	wgowmB344

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011857	Cucurbita maxima (Rimu)	cmawmB287
Cla011857	Cucurbita moschata (Rifu)	cmowmB278
Cla011857	Wild cucumber (PI 183967)	cpiwmB167
Cla011857	Melon (DHL92) v3.5.1	mewmB332
Cla011857	Cucurbita pepo (Zucchini)	cpewmB192
Cla011857	Cucumber (Gy14) v2	cgybwmB156
Cla011857	Melon (DHL92) v3.6.1	medwmB329