Cla011479 (gene) Watermelon (97103) v1

NameCla011479
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 2845646 .. 2846134 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTATCCAAAGCCTCCTCCGCCGTTTGTGGTGGCGATCAATGTCATATCAGCCGACGGCCTAAAATTTCCCTTATCCCTCTTCTCTCTCCACCGCCCTTTCCGGCCTTTCGTTACTCTCTCTATCGCGCCGGCACAGCTACAGTACAAAACCACGGTGGCCGACGGTGAACTTTTTCCCTCAAGTCCCATATACTTTGGCGACGTCTTTCGCATCCCATTGGACGCCGACTTTTTCTCCGACAGATGTTTCGTTTTCCTCCCCCTCTTCTCAAAGCGGCTGCTTTTCCGCCCGGCTCTCGTTGGGTGGTGCCGGATGCCAGCTATCTGGCAGCCGTCTGTGGGTTCAGTCAGACATCTAAGTTACCGGCTCATGGCTCATGGTAAAAGGAGTCTTGTGATTGTTAACCTCGCCGTGAAAGTGGCCGGCCCCATGGCGGAGACATGTCAGGCGGTGATTGACGTCAATCAAGATGATTGTTTTTAG

mRNA sequence

ATGTCTTATCCAAAGCCTCCTCCGCCGTTTGTGGTGGCGATCAATGTCATATCAGCCGACGGCCTAAAATTTCCCTTATCCCTCTTCTCTCTCCACCGCCCTTTCCGGCCTTTCGTTACTCTCTCTATCGCGCCGGCACAGCTACAGTACAAAACCACGGTGGCCGACGGTGAACTTTTTCCCTCAAGTCCCATATACTTTGGCGACGTCTTTCGCATCCCATTGGACGCCGACTTTTTCTCCGACAGATGTTTCGTTTTCCTCCCCCTCTTCTCAAAGCGGCTGCTTTTCCGCCCGGCTCTCGTTGGGTGGTGCCGGATGCCAGCTATCTGGCAGCCGTCTGTGGGTTCAGTCAGACATCTAAGTTACCGGCTCATGGCTCATGGTAAAAGGAGTCTTGTGATTGTTAACCTCGCCGTGAAAGTGGCCGGCCCCATGGCGGAGACATGTCAGGCGGTGATTGACGTCAATCAAGATGATTGTTTTTAG

Coding sequence (CDS)

ATGTCTTATCCAAAGCCTCCTCCGCCGTTTGTGGTGGCGATCAATGTCATATCAGCCGACGGCCTAAAATTTCCCTTATCCCTCTTCTCTCTCCACCGCCCTTTCCGGCCTTTCGTTACTCTCTCTATCGCGCCGGCACAGCTACAGTACAAAACCACGGTGGCCGACGGTGAACTTTTTCCCTCAAGTCCCATATACTTTGGCGACGTCTTTCGCATCCCATTGGACGCCGACTTTTTCTCCGACAGATGTTTCGTTTTCCTCCCCCTCTTCTCAAAGCGGCTGCTTTTCCGCCCGGCTCTCGTTGGGTGGTGCCGGATGCCAGCTATCTGGCAGCCGTCTGTGGGTTCAGTCAGACATCTAAGTTACCGGCTCATGGCTCATGGTAAAAGGAGTCTTGTGATTGTTAACCTCGCCGTGAAAGTGGCCGGCCCCATGGCGGAGACATGTCAGGCGGTGATTGACGTCAATCAAGATGATTGTTTTTAG

Protein sequence

MSYPKPPPPFVVAINVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQYKTTVADGELFPSSPIYFGDVFRIPLDADFFSDRCFVFLPLFSKRLLFRPALVGWCRMPAIWQPSVGSVRHLSYRLMAHGKRSLVIVNLAVKVAGPMAETCQAVIDVNQDDCF
BLAST of Cla011479 vs. TrEMBL
Match: A0A0A0KKM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155490 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.1e-41
Identity = 100/160 (62.50%), Postives = 111/160 (69.38%), Query Frame = 1

Query: 1   MSYPKP--PPPFVVAINVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQYKTTVADGE 60
           MSYPK   PPPFVV I VISADGLK   S+FSLHRPFRPF+TLS  P          DG 
Sbjct: 1   MSYPKLILPPPFVVEITVISADGLKNSSSIFSLHRPFRPFLTLSTVPD---------DGG 60

Query: 61  LFPSSPIY-FGDVFRIPLDADFFSDRCFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSV 120
             PS+PIY FGD+FRIPLD  FF +RCF+FL LFSKRLLF PAL+GWCRMPA  I Q  V
Sbjct: 61  FLPSNPIYHFGDLFRIPLDVGFFPNRCFIFLRLFSKRLLFGPALIGWCRMPADDISQLPV 120

Query: 121 GSVRHLSYRLMAH-GKRSLVIVNLAVKVAGPMAETCQAVI 155
           GSV+ LSYRL    G RS VIVNL +K+   + E C  VI
Sbjct: 121 GSVKRLSYRLRKRDGSRSRVIVNLTLKLVESVMEPCGTVI 151

BLAST of Cla011479 vs. TrEMBL
Match: A0A0D2QLP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G160700 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-14
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1

Query: 10  FVVAINVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQ---------YKTTVAD-GEL 69
           F + + V+SA GLK   S    HR  RPF+T++  P  L+         ++T V D G +
Sbjct: 9   FTLEMTVVSAQGLKNTSSFLFTHR-LRPFITITTFPPPLEAADLKSCRGFQTRVDDQGGV 68

Query: 70  FPSSPIYFGDVFRIPLDADFFSDR-CFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSVG 129
            P+    +GD F +P+   FF++R   ++L LF+KRL+   A +GWC++PA  I  P VG
Sbjct: 69  NPT----WGDKFLVPIHHTFFANRYSCIYLQLFTKRLISGKAQLGWCQIPAADIGLPPVG 128

Query: 130 SVRHLSYRLM-AHGKRSLVIVNLAVKV 143
           SVR LSYRL  A G R+  +VN+AVK+
Sbjct: 129 SVRQLSYRLREADGTRTHGVVNVAVKL 150

BLAST of Cla011479 vs. TrEMBL
Match: A0A059C1K6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00553 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 1

Query: 7   PPPFVVAINVISADGLKFPLSLFSLHRPFRPFVTL----SIAPAQLQYKTTVADGELFPS 66
           P P  + I VISADGLK P S     RP RPF++L    S AP+ ++      +G+    
Sbjct: 6   PEPSNMDITVISADGLKKP-SCTIFARPPRPFISLTAITSSAPSVVRN-----NGDKEDR 65

Query: 67  SPIYFGDVFRIPLDADFFSD-RCFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSVGSVR 126
             + +GD FR+ + + FF+D    + L L+ K        +GWCR+PA  +  P+V SV+
Sbjct: 66  VGLNWGDEFRVHVSSSFFTDLNASIHLQLYRKSFTQGWTQLGWCRVPAADVMSPAVDSVK 125

Query: 127 HLSYRLMAH-GKRSLVIVNLAVKVAGPMA 148
           +LSYRL+A  G RS  I+NLAVKV   +A
Sbjct: 126 YLSYRLLARDGTRSDGIINLAVKVGLSLA 148

BLAST of Cla011479 vs. TrEMBL
Match: V7CJZ9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G155100g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = 1

Query: 14  INVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQYKTTVADGELFPSSPIYFGD-VFR 73
           I V+S +GL    S F+     RPF TL+  PAQL Y     DG          GD VFR
Sbjct: 6   ITVVSTEGLNQYSSYFNR---IRPFFTLTKLPAQLLYNY---DGG-------GTGDHVFR 65

Query: 74  IPLDADFFSDRCF-VFLPLFSKRLLFRPALVGWCRMPA--IWQPSVGSVRHLSYRLMAH- 133
           +PLD  FFSD    +   L++ R    P L+GWC +P   I  P   S R LSYRL A  
Sbjct: 66  VPLDPTFFSDTYSRLHFHLYNNRRFAGPTLLGWCLIPPSDIAFPPSPSPRFLSYRLRAKD 125

Query: 134 GKRSLVIVNLAVKVAGPMAETCQAVIDV 157
           G R+ +I+NL+++   P  +TCQ+VI +
Sbjct: 126 GSRTHLILNLSLRFHPPHPDTCQSVIGI 140

BLAST of Cla011479 vs. TrEMBL
Match: M5WVB6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010653mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 1

Query: 14  INVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQ---YKTTVAD-GELFPSSPIYFGD 73
           I VISA GLK   S  +     R F+TL+      +   Y T V D G + P+    +GD
Sbjct: 5   ITVISAQGLK-TTSPTTFSNKIRTFITLTTTNGDHKCHVYSTGVDDEGGINPT----WGD 64

Query: 74  VFRIPLDADFFSDR-CFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSVGSVRHLSYRLM 133
            F +P+D  FF++R   ++L L+SKRL+     +GWC++ A  I  P  GS R+LSYRL 
Sbjct: 65  KFHVPVDTSFFTNRYSCIYLQLYSKRLIMGRTQLGWCQISAQDIGFPPAGSARYLSYRLR 124

Query: 134 AH-GKRSLVIVNLAVKV--AGPMA 148
           A  G R+  IVNL+VK+   GP++
Sbjct: 125 ARDGSRTNGIVNLSVKLENLGPVS 143

BLAST of Cla011479 vs. NCBI nr
Match: gi|700194961|gb|KGN50138.1| (hypothetical protein Csa_5G155490 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 100/160 (62.50%), Postives = 111/160 (69.38%), Query Frame = 1

Query: 1   MSYPKP--PPPFVVAINVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQYKTTVADGE 60
           MSYPK   PPPFVV I VISADGLK   S+FSLHRPFRPF+TLS  P          DG 
Sbjct: 1   MSYPKLILPPPFVVEITVISADGLKNSSSIFSLHRPFRPFLTLSTVPD---------DGG 60

Query: 61  LFPSSPIY-FGDVFRIPLDADFFSDRCFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSV 120
             PS+PIY FGD+FRIPLD  FF +RCF+FL LFSKRLLF PAL+GWCRMPA  I Q  V
Sbjct: 61  FLPSNPIYHFGDLFRIPLDVGFFPNRCFIFLRLFSKRLLFGPALIGWCRMPADDISQLPV 120

Query: 121 GSVRHLSYRLMAH-GKRSLVIVNLAVKVAGPMAETCQAVI 155
           GSV+ LSYRL    G RS VIVNL +K+   + E C  VI
Sbjct: 121 GSVKRLSYRLRKRDGSRSRVIVNLTLKLVESVMEPCGTVI 151

BLAST of Cla011479 vs. NCBI nr
Match: gi|1009156413|ref|XP_015896235.1| (PREDICTED: BON1-associated protein 2-like [Ziziphus jujuba])

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 68/177 (38.42%), Postives = 96/177 (54.24%), Query Frame = 1

Query: 8   PPFVVAINVISADGLKFPLSLFSLHRPFRPFVTLS-IAPAQLQ-----------YKTTVA 67
           P   + I VISA GLK   S+    R  RPF+TL+ ++P               YKT V 
Sbjct: 12  PLITMEITVISAKGLKASSSIPFSQR-LRPFITLTTVSPTSPYTPSNDGKHCHVYKTRVD 71

Query: 68  D-GELFPSSPIYFGDVFRIPLDADFFSDR-CFVFLPLFSKRLLFRPALVGWCRMPA--IW 127
           D G + P+    +GD F +P+D+ FF++R   ++L L++KRL+     +GWC++PA  I 
Sbjct: 72  DQGGVNPT----WGDKFHVPIDSTFFTNRYSSIYLQLYTKRLVLGQTQLGWCQIPAHDIG 131

Query: 128 QPSVGSVRHLSYRLMAH-GKRSLVIVNLAVKVAG-----------PMAETCQAVIDV 157
            P  GSVRHLSYRL A  G R+  I+NLA++  G           P  +TCQ VI +
Sbjct: 132 FPPAGSVRHLSYRLRARDGSRTNGILNLAIRFEGLENQGLTNSISPTLDTCQTVIGI 183

BLAST of Cla011479 vs. NCBI nr
Match: gi|823144041|ref|XP_012471840.1| (PREDICTED: uncharacterized protein LOC105789140 [Gossypium raimondii])

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-14
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1

Query: 10  FVVAINVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQ---------YKTTVAD-GEL 69
           F + + V+SA GLK   S    HR  RPF+T++  P  L+         ++T V D G +
Sbjct: 9   FTLEMTVVSAQGLKNTSSFLFTHR-LRPFITITTFPPPLEAADLKSCRGFQTRVDDQGGV 68

Query: 70  FPSSPIYFGDVFRIPLDADFFSDR-CFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSVG 129
            P+    +GD F +P+   FF++R   ++L LF+KRL+   A +GWC++PA  I  P VG
Sbjct: 69  NPT----WGDKFLVPIHHTFFANRYSCIYLQLFTKRLISGKAQLGWCQIPAADIGLPPVG 128

Query: 130 SVRHLSYRLM-AHGKRSLVIVNLAVKV 143
           SVR LSYRL  A G R+  +VN+AVK+
Sbjct: 129 SVRQLSYRLREADGTRTHGVVNVAVKL 150

BLAST of Cla011479 vs. NCBI nr
Match: gi|763753326|gb|KJB20714.1| (hypothetical protein B456_003G160700 [Gossypium raimondii])

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-14
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1

Query: 10  FVVAINVISADGLKFPLSLFSLHRPFRPFVTLSIAPAQLQ---------YKTTVAD-GEL 69
           F + + V+SA GLK   S    HR  RPF+T++  P  L+         ++T V D G +
Sbjct: 9   FTLEMTVVSAQGLKNTSSFLFTHR-LRPFITITTFPPPLEAADLKSCRGFQTRVDDQGGV 68

Query: 70  FPSSPIYFGDVFRIPLDADFFSDR-CFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSVG 129
            P+    +GD F +P+   FF++R   ++L LF+KRL+   A +GWC++PA  I  P VG
Sbjct: 69  NPT----WGDKFLVPIHHTFFANRYSCIYLQLFTKRLISGKAQLGWCQIPAADIGLPPVG 128

Query: 130 SVRHLSYRLM-AHGKRSLVIVNLAVKV 143
           SVR LSYRL  A G R+  +VN+AVK+
Sbjct: 129 SVRQLSYRLREADGTRTHGVVNVAVKL 150

BLAST of Cla011479 vs. NCBI nr
Match: gi|629106968|gb|KCW72114.1| (hypothetical protein EUGRSUZ_E00553 [Eucalyptus grandis])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 1

Query: 7   PPPFVVAINVISADGLKFPLSLFSLHRPFRPFVTL----SIAPAQLQYKTTVADGELFPS 66
           P P  + I VISADGLK P S     RP RPF++L    S AP+ ++      +G+    
Sbjct: 6   PEPSNMDITVISADGLKKP-SCTIFARPPRPFISLTAITSSAPSVVRN-----NGDKEDR 65

Query: 67  SPIYFGDVFRIPLDADFFSD-RCFVFLPLFSKRLLFRPALVGWCRMPA--IWQPSVGSVR 126
             + +GD FR+ + + FF+D    + L L+ K        +GWCR+PA  +  P+V SV+
Sbjct: 66  VGLNWGDEFRVHVSSSFFTDLNASIHLQLYRKSFTQGWTQLGWCRVPAADVMSPAVDSVK 125

Query: 127 HLSYRLMAH-GKRSLVIVNLAVKVAGPMA 148
           +LSYRL+A  G RS  I+NLAVKV   +A
Sbjct: 126 YLSYRLLARDGTRSDGIINLAVKVGLSLA 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KKM2_CUCSA8.1e-4162.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155490 PE=4 SV=1[more]
A0A0D2QLP7_GOSRA3.8e-1440.82Uncharacterized protein OS=Gossypium raimondii GN=B456_003G160700 PE=4 SV=1[more]
A0A059C1K6_EUCGR1.2e-1240.27Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00553 PE=4 SV=1[more]
V7CJZ9_PHAVU5.1e-1140.54Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G155100g PE=4 SV=1[more]
M5WVB6_PRUPE5.1e-1140.28Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010653mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700194961|gb|KGN50138.1|1.2e-4062.50hypothetical protein Csa_5G155490 [Cucumis sativus][more]
gi|1009156413|ref|XP_015896235.1|2.9e-1538.42PREDICTED: BON1-associated protein 2-like [Ziziphus jujuba][more]
gi|823144041|ref|XP_012471840.1|5.5e-1440.82PREDICTED: uncharacterized protein LOC105789140 [Gossypium raimondii][more]
gi|763753326|gb|KJB20714.1|5.5e-1440.82hypothetical protein B456_003G160700 [Gossypium raimondii][more]
gi|629106968|gb|KCW72114.1|1.8e-1240.27hypothetical protein EUGRSUZ_E00553 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011479Cla011479.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainunknownSSF49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 6..108
score: 8.1
NoneNo IPR availablePANTHERPTHR32246FAMILY NOT NAMEDcoord: 14..144
score: 1.4
NoneNo IPR availablePANTHERPTHR32246:SF26SUBFAMILY NOT NAMEDcoord: 14..144
score: 1.4

The following gene(s) are paralogous to this gene:

None