Cla011051 (gene) Watermelon (97103) v1

NameCla011051
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionNuclear speckle splicing regulatory protein 1 (AHRD V1 **-- NSRP1_HUMAN); contains Interpro domain(s) IPR018612 Protein of unknown function DUF2040, coiled-coil
LocationChr1 : 16346719 .. 16347120 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGTATGGCCTGCAGCTTAGGGTTAAGCCATCACAGCAGAAGCAGCCTACAAGACCGCCCCTTCGTGCTCCTCTTGGATTTCAAGAAGATGATGATGATGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGCGCTGAAGGATGTAAGTTAGAACAGGTCTCTTTATTGAGCAAAGATAATGTCATTAACAAGAATCTCAGGGTTGTATGCTAGACTTATTTTATTTTTCCACCTTGAAAAATCAAATTAGATTGAGGAGCAACACAAGAAAGCACTAGAGGAGGATCCGTCTGTTTTTGACTATGATGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCAACCTCGAGCATATGATCGTGAAGAGCGGAAGGTATGTTCATAA

mRNA sequence

ATGAGCAAGTATGGCCTGCAGCTTAGGGTTAAGCCATCACAGCAGAAGCAGCCTACAAGACCGCCCCTTCGTGCTCCTCTTGGATTTCAAGAAGATGATGATGATGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGCGCTGAAGGATATTGAGGAGCAACACAAGAAAGCACTAGAGGAGGATCCGTCTGTTTTTGACTATGATGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCAACCTCGAGCATATGATCGTGAAGAGCGGAAGGTATGTTCATAA

Coding sequence (CDS)

ATGAGCAAGTATGGCCTGCAGCTTAGGGTTAAGCCATCACAGCAGAAGCAGCCTACAAGACCGCCCCTTCGTGCTCCTCTTGGATTTCAAGAAGATGATGATGATGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGCGCTGAAGGATATTGAGGAGCAACACAAGAAAGCACTAGAGGAGGATCCGTCTGTTTTTGACTATGATGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCAACCTCGAGCATATGATCGTGAAGAGCGGAAGGTATGTTCATAA

Protein sequence

MSKYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHKKALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKVCS
BLAST of Cla011051 vs. Swiss-Prot
Match: NSRP1_MOUSE (Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1

Query: 3  KYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDD---VEREISRQASKNKALKDIEEQHK 62
          +YGL L  K     QP    L+ P  F  D DDD   V   + R+A+K +A+K  + + +
Sbjct: 7  QYGLILPKKT----QPLHRVLQKPSVFGSDSDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63 KALEEDPSVFDYDGVYDEMKEKAVQ--PRAYDREERK 95
          KAL ED +V++YD VYDEM++K  +  P+    ++RK
Sbjct: 67 KALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRK 99

BLAST of Cla011051 vs. Swiss-Prot
Match: NSRP1_HUMAN (Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-08
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1

Query: 3  KYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDDVEREIS----RQASKNKALKDIEEQH 62
          +YGL L  K  Q      P L+ P  F  D DDD E  +S    R+A+K +A+K  + + 
Sbjct: 7  QYGLILPKKTQQ----LHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEI 66

Query: 63 KKALEEDPSVFDYDGVYDEMKEK 82
          +KAL ED +V++YD +YDEM++K
Sbjct: 67 QKALAEDATVYEYDSIYDEMQKK 85

BLAST of Cla011051 vs. Swiss-Prot
Match: NSRP1_CAEBR (Nuclear speckle splicing regulatory protein 1 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1

Query: 14 QQKQPTRPPLRAPLGFQEDDDDDVEREISRQASKN--KALKDIEEQHKKALEEDPSVFDY 73
          Q+++P R P+R    F +DDDD+     +  +S +  +  K  E +H+KA  EDP++FDY
Sbjct: 14 QKEEPKRAPVRVSSVFGDDDDDEAPATATNTSSASVIRIQKAAEREHQKAEAEDPTIFDY 73

Query: 74 DGVYDEMK----EKAVQPRAYDREE 93
          DG YDE++    EK  + R  D+ +
Sbjct: 74 DGNYDEIQAIKNEKKEEARKADKNK 98

BLAST of Cla011051 vs. Swiss-Prot
Match: NSRP1_BOVIN (Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-08
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 1

Query: 3  KYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDD-----VEREISRQASKNKALKDIEEQ 62
          +YGL L  K  Q      P L+ P  F  D DDD     V   + R+A+K +A+K  + +
Sbjct: 7  QYGLILPKKAQQ----LHPVLQKPSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTKLE 66

Query: 63 HKKALEEDPSVFDYDGVYDEMKEK 82
           +KAL ED +V++YD +YDEM++K
Sbjct: 67 IQKALAEDSTVYEYDSIYDEMQKK 86

BLAST of Cla011051 vs. Swiss-Prot
Match: NSRP1_RAT (Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-08
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1

Query: 3  KYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDD---VEREISRQASKNKALKDIEEQHK 62
          +YGL L  K     QP    L+ P  F  D DDD   V   + R+A+K +A++  + + +
Sbjct: 7  QYGLILPKKT----QPLNRVLQKPSVFGNDSDDDEASVSESLQREAAKKQAMRQTKLEIQ 66

Query: 63 KALEEDPSVFDYDGVYDEMKEKAVQ--PRAYDREERK 95
          KAL ED +V++YD +YDEM++K  +  P+    ++RK
Sbjct: 67 KALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRK 99

BLAST of Cla011051 vs. TrEMBL
Match: A0A0A0LJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.5e-45
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHKK 60
          MSKYGLQLRVKPSQQKQPTRPPL APLGFQ+DDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1  MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61 ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          ALEEDPSVFDYDGVYDEMKEK VQPRAYDREERK
Sbjct: 61 ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERK 94

BLAST of Cla011051 vs. TrEMBL
Match: A0A061GV10_THECC (Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao GN=TCM_041289 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-37
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  PLGF++DDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1  MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDPSVFDYDGVYDEMKEK V+PR  DREER+
Sbjct: 61 KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQ 95

BLAST of Cla011051 vs. TrEMBL
Match: A0A0B0NEG8_GOSAR (Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.5e-37
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  P GFQEDDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1  MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDP VFDYDGVYD MKE+ V+PRA DREERK
Sbjct: 61 KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERK 95

BLAST of Cla011051 vs. TrEMBL
Match: A0A0D2PQG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.5e-37
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  P GFQEDDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1  MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDPSVFDYDGVYD MKE+ V+PRA D EERK
Sbjct: 61 KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERK 95

BLAST of Cla011051 vs. TrEMBL
Match: A0A0D2QPK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.5e-37
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  P GFQEDDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1  MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDPSVFDYDGVYD MKE+ V+PRA D EERK
Sbjct: 61 KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERK 95

BLAST of Cla011051 vs. NCBI nr
Match: gi|449470301|ref|XP_004152856.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHKK 60
          MSKYGLQLRVKPSQQKQPTRPPL APLGFQ+DDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1  MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61 ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          ALEEDPSVFDYDGVYDEMKEK VQPRAYDREERK
Sbjct: 61 ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERK 94

BLAST of Cla011051 vs. NCBI nr
Match: gi|659069555|ref|XP_008450616.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 8.8e-44
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1

Query: 1   MSKYGLQLRVKPSQQKQPTRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQP RPPL APLGFQ+DDDD+VEREISRQASKNKALKDIEEQHKK
Sbjct: 13  MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 72

Query: 61  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
           ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK
Sbjct: 73  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 106

BLAST of Cla011051 vs. NCBI nr
Match: gi|590586457|ref|XP_007015711.1| (Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 162.2 bits (409), Expect = 4.7e-37
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  PLGF++DDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1  MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDPSVFDYDGVYDEMKEK V+PR  DREER+
Sbjct: 61 KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQ 95

BLAST of Cla011051 vs. NCBI nr
Match: gi|763741616|gb|KJB09115.1| (hypothetical protein B456_001G124100 [Gossypium raimondii])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  P GFQEDDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1  MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDPSVFDYDGVYD MKE+ V+PRA D EERK
Sbjct: 61 KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERK 95

BLAST of Cla011051 vs. NCBI nr
Match: gi|728829958|gb|KHG09401.1| (Nuclear speckle splicing regulatory 1 [Gossypium arboreum])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MSKYGLQLRVKPSQQKQP-TRPPLRAPLGFQEDDDDDVEREISRQASKNKALKDIEEQHK 60
          M KYGLQLRV PSQQK+P TRPPL  P GFQEDDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1  MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61 KALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERK 95
          KALEEDP VFDYDGVYD MKE+ V+PRA DREERK
Sbjct: 61 KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NSRP1_MOUSE1.2e-0838.14Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1[more]
NSRP1_HUMAN1.6e-0840.96Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1[more]
NSRP1_CAEBR2.7e-0836.47Nuclear speckle splicing regulatory protein 1 homolog OS=Caenorhabditis briggsae... [more]
NSRP1_BOVIN3.5e-0839.29Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1[more]
NSRP1_RAT6.0e-0836.08Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1... [more]
Match NameE-valueIdentityDescription
A0A0A0LJE9_CUCSA9.5e-4596.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1[more]
A0A061GV10_THECC3.3e-3783.16Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao ... [more]
A0A0B0NEG8_GOSAR9.5e-3783.16Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 S... [more]
A0A0D2PQG7_GOSRA9.5e-3783.16Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1[more]
A0A0D2QPK2_GOSRA9.5e-3783.16Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449470301|ref|XP_004152856.1|1.4e-4496.81PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus][more]
gi|659069555|ref|XP_008450616.1|8.8e-4495.74PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo][more]
gi|590586457|ref|XP_007015711.1|4.7e-3783.16Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao][more]
gi|763741616|gb|KJB09115.1|1.4e-3683.16hypothetical protein B456_001G124100 [Gossypium raimondii][more]
gi|728829958|gb|KHG09401.1|1.4e-3683.16Nuclear speckle splicing regulatory 1 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018612DUF2040
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU28924watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011051Cla011051.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU28924WMU28924transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018612Domain of unknown function DUF2040PFAMPF09745DUF2040coord: 55..93
score: 6.8
NoneNo IPR availableunknownCoilCoilcoord: 44..64
scor
NoneNo IPR availablePANTHERPTHR30060INNER MEMBRANE PROTEINcoord: 1..94
score: 2.0
NoneNo IPR availablePANTHERPTHR30060:SF0COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..94
score: 2.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla011051Cla97C01G011290Watermelon (97103) v2wmwmbB246
Cla011051ClCG01G011660Watermelon (Charleston Gray)wcgwmB155
Cla011051Cp4.1LG00g01670Cucurbita pepo (Zucchini)cpewmB014
The following gene(s) are paralogous to this gene:

None