Cla010959 (gene) Watermelon (97103) v1

Overview
NameCla010959
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
LocationChr1 : 18778329 .. 18778823 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTAAAGAAAATGCTTCTAAAGCTTCAAGCGACATTGTCAGAAGATCGATTACTCACAACCGCTCCAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCGGATCTCCAAGAACCCAAAAGCTGGGGTCGTCATTAAAGAAAATTCTACCCTTGACAGGCATACCTCAGCTTCTGAACAATCAAGTGAGGAGGCATCCCACCCAAATGTAATGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAAAATGGTTGAGCTTGCAAAGAAAGTTAACATGCTACTAAAGCCAGTTGAAAAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATCGAAAGTCGTGACGCAGCTGAATCAAGTCATACACTCACAATCAAGAATAATGACAAAGGGAAAAAGATTTTGCAAGACAGTCAGCCCCAAGATTCAACTTCAAACTCCATCAAAGCTCCATATTAA

mRNA sequence

ATGGCATCTAAAGAAAATGCTTCTAAAGCTTCAAGCGACATTGTCAGAAGATCGATTACTCACAACCGCTCCAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCGGATCTCCAAGAACCCAAAAGCTGGGGTCGTCATTAAAGAAAATTCTACCCTTGACAGGCATACCTCAGCTTCTGAACAATCAAGTGAGGAGGCATCCCACCCAAATGTAATGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAAAATGGTTGAGCTTGCAAAGAAAGTTAACATGCTACTAAAGCCAGTTGAAAAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATCGAAAGTCGTGACGCAGCTGAATCAAGTCATACACTCACAATCAAGAATAATGACAAAGGGAAAAAGATTTTGCAAGACAGTCAGCCCCAAGATTCAACTTCAAACTCCATCAAAGCTCCATATTAA

Coding sequence (CDS)

ATGGCATCTAAAGAAAATGCTTCTAAAGCTTCAAGCGACATTGTCAGAAGATCGATTACTCACAACCGCTCCAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCGGATCTCCAAGAACCCAAAAGCTGGGGTCGTCATTAAAGAAAATTCTACCCTTGACAGGCATACCTCAGCTTCTGAACAATCAAGTGAGGAGGCATCCCACCCAAATGTAATGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAAAATGGTTGAGCTTGCAAAGAAAGTTAACATGCTACTAAAGCCAGTTGAAAAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATCGAAAGTCGTGACGCAGCTGAATCAAGTCATACACTCACAATCAAGAATAATGACAAAGGGAAAAAGATTTTGCAAGACAGTCAGCCCCAAGATTCAACTTCAAACTCCATCAAAGCTCCATATTAA

Protein sequence

MASKENASKASSDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKENSTLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQPQDSTSNSIKAPY
Homology
[Close]
BLAST of Cla010959 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.4e-37
Identity = 89/164 (54.27%), Postives = 115/164 (70.12%), Query Frame = 1 

Query: 1   MASKENASKASSDIVRRSITHNRSKEIQL-EEQPTFEITRNIWERISKNPKAGVVIKENS 60
           M S+ N SKA SDI +R  T + S+EIQ  E+   FE+ +NIWE+ISK PK G++IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIASL 120
            +D+H S SE S+EEA  PN+MSVM+ DV TSE +MVEL KKVNML+K VE+RD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESSHTLTIKNNDKG-KKILQDSQPQDSTSNSIKA 163
           KNHIESRD AES+  +  +    G   ILQ  +P+     + KA
Sbjct: 121 KNHIESRDTAESTVEMCTQGMHWGLLYILQGIKPRTFEELAAKA 164

[Close]
BLAST of Cla010959 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 66/183 (36.07%), Postives = 110/183 (60.11%), Query Frame = 1 

Query: 1   MASKENASKAS--SDIVRRSITHNRSKEI--QLEEQPTFEITRNIWERISKNPKAGVVIK 60
           MA+ + ASK+S  SD     +T +  K    + E++  F + +   E++ ++PK G++I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENSTLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEI 120
           +N   +  T AS  S ++ASH  V+SVMM DV T+E  + E+ +K+N L+K +E+RD+EI
Sbjct: 61  DNPLFNNSTPASNLS-DKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEI 120

Query: 121 ASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQP---------------QDSTSNSIK 165
           A+LK+ +++ +  ESS T  +K  DKGK ++Q++QP               QD  +NSI+
Sbjct: 121 AALKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIR 180

[Close]
BLAST of Cla010959 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 30  EEQPTFEITRNIWERISKNPKAGVVIKENSTLDRHTSASEQSSEEASHPNVMSVMMADVG 89
           E++  F + +   E++ ++ K G++I++N   +  T  S  S +E SH  V+SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV- 62

Query: 90  TSEEKMVELAKKVNMLLKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQD 149
           T+E  M E+ KK+N L+K VE+RD+EIA+LK+ +++ ++AESS T  +K  DKGK +   
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV-YG 122

Query: 150 SQPQDSTSNSIKAPY 165
             PQ  TS     PY
Sbjct: 123 GPPQ--TSFMYSKPY 132

[Close]
BLAST of Cla010959 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.5e-13
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1 

Query: 1   MASKENASKAS--SDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKEN 60
           MA  + ASKA   +D   R I  + SK    +++    + +  WE++ ++PK G++IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  STLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIAS 120
              +  T AS  S +E SH  V+S+MMADV T E  MVE+  K+N L+K VE+RDY I  
Sbjct: 61  PLFEDSTPASNLSEKE-SHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITV 119

[Close]
BLAST of Cla010959 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.5e-13
Identity = 49/132 (37.12%), Postives = 83/132 (62.88%), Query Frame = 1 

Query: 1   MASKENASKAS--SDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKEN 60
           MA ++ ASKA+  +D     +T + SK    E++ +  + +  WE++ ++PK G+ I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  STLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIAS 120
              +  T AS  S +E SH  V+SV+MA V T+E  MVE+ +K+N L+K V+ RD+EI +
Sbjct: 61  PLFNNSTPASNLSDKE-SHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITA 120

Query: 121 LKNHIESRDAAE 131
           L++ +++   AE
Sbjct: 121 LEDQMKACVTAE 130

[Close]
BLAST of Cla010959 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 89/164 (54.27%), Postives = 115/164 (70.12%), Query Frame = 1 

Query: 1   MASKENASKASSDIVRRSITHNRSKEIQL-EEQPTFEITRNIWERISKNPKAGVVIKENS 60
           M S+ N SKA SDI +R  T + S+EIQ  E+   FE+ +NIWE+ISK PK G++IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIASL 120
            +D+H S SE S+EEA  PN+MSVM+ DV TSE +MVEL KKVNML+K VE+RD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESSHTLTIKNNDKG-KKILQDSQPQDSTSNSIKA 163
           KNHIESRD AES+  +  +    G   ILQ  +P+     + KA
Sbjct: 121 KNHIESRDTAESTVEMCTQGMHWGLLYILQGIKPRTFEELAAKA 164

[Close]
BLAST of Cla010959 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 66/183 (36.07%), Postives = 110/183 (60.11%), Query Frame = 1 

Query: 1   MASKENASKAS--SDIVRRSITHNRSKEI--QLEEQPTFEITRNIWERISKNPKAGVVIK 60
           MA+ + ASK+S  SD     +T +  K    + E++  F + +   E++ ++PK G++I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENSTLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEI 120
           +N   +  T AS  S ++ASH  V+SVMM DV T+E  + E+ +K+N L+K +E+RD+EI
Sbjct: 61  DNPLFNNSTPASNLS-DKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEI 120

Query: 121 ASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQP---------------QDSTSNSIK 165
           A+LK+ +++ +  ESS T  +K  DKGK ++Q++QP               QD  +NSI+
Sbjct: 121 AALKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIR 180

[Close]
BLAST of Cla010959 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.4 bits (228), Expect = 7.7e-16
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 30  EEQPTFEITRNIWERISKNPKAGVVIKENSTLDRHTSASEQSSEEASHPNVMSVMMADVG 89
           E++  F + +   E++ ++ K G++I++N   +  T  S  S +E SH  V+SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV- 62

Query: 90  TSEEKMVELAKKVNMLLKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQD 149
           T+E  M E+ KK+N L+K VE+RD+EIA+LK+ +++ ++AESS T  +K  DKGK +   
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV-YG 122

Query: 150 SQPQDSTSNSIKAPY 165
             PQ  TS     PY
Sbjct: 123 GPPQ--TSFMYSKPY 132

[Close]
BLAST of Cla010959 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 106 LKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQPQDSTS 158
           +K VE+RD+EIA LKNHIESRDAAESSHT TIKN +KGK I+Q+SQPQ+STS
Sbjct: 1   MKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTS 52

[Close]
BLAST of Cla010959 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1 

Query: 1   MASKENASKAS--SDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKEN 60
           MA  + ASKA   +D   R I  + SK    +++    + +  WE++ ++PK G++IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  STLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIAS 120
              +  T AS  S +E SH  V+S+MMADV T E  MVE+  K+N L+K VE+RDY I  
Sbjct: 61  PLFEDSTPASNLSEKE-SHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITV 119

The following BLAST results are available for this feature:
BLAST of Cla010959 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME9.4e-3754.27Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCP6_CUCME9.5e-2136.07Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME5.4e-1640.00Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCM2_CUCME9.5e-1341.32Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE3_CUCME9.5e-1337.12Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla010959 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|1.4e-3654.27ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136441|gb|ADN34247.1|1.4e-2036.07ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|7.7e-1640.00retrotransposon gag protein [Cucumis melo subsp. melo][more]
gi|659074577|ref|XP_008437679.1|1.0e-1276.92PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
gi|307136413|gb|ADN34221.1|1.4e-1241.32hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010959Cla010959.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010959Cucumber (Gy14) v1cgywmB345
Cla010959Cucurbita maxima (Rimu)cmawmB059
Cla010959Cucurbita moschata (Rifu)cmowmB052
Cla010959Cucurbita moschata (Rifu)cmowmB378
Cla010959Watermelon (Charleston Gray)wcgwmB155
Cla010959Cucumber (Chinese Long) v2cuwmB042
Cla010959Cucurbita pepo (Zucchini)cpewmB364
Cla010959Bottle gourd (USVL1VR-Ls)lsiwmB205
Cla010959Cucumber (Gy14) v2cgybwmB043
Cla010959Melon (DHL92) v3.6.1medwmB168
Cla010959Silver-seed gourdcarwmB0740
Cla010959Cucumber (Chinese Long) v3cucwmB049
Cla010959Watermelon (97103) v2wmwmbB246
Cla010959Wax gourdwgowmB500