Cla010959 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010959
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
Location	Chr1 : 18778329 .. 18778823 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTAAAGAAAATGCTTCTAAAGCTTCAAGCGACATTGTCAGAAGATCGATTACTCACAACCGCTCCAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCGGATCTCCAAGAACCCAAAAGCTGGGGTCGTCATTAAAGAAAATTCTACCCTTGACAGGCATACCTCAGCTTCTGAACAATCAAGTGAGGAGGCATCCCACCCAAATGTAATGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAAAATGGTTGAGCTTGCAAAGAAAGTTAACATGCTACTAAAGCCAGTTGAAAAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATCGAAAGTCGTGACGCAGCTGAATCAAGTCATACACTCACAATCAAGAATAATGACAAAGGGAAAAAGATTTTGCAAGACAGTCAGCCCCAAGATTCAACTTCAAACTCCATCAAAGCTCCATATTAA

mRNA sequence

ATGGCATCTAAAGAAAATGCTTCTAAAGCTTCAAGCGACATTGTCAGAAGATCGATTACTCACAACCGCTCCAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCGGATCTCCAAGAACCCAAAAGCTGGGGTCGTCATTAAAGAAAATTCTACCCTTGACAGGCATACCTCAGCTTCTGAACAATCAAGTGAGGAGGCATCCCACCCAAATGTAATGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAAAATGGTTGAGCTTGCAAAGAAAGTTAACATGCTACTAAAGCCAGTTGAAAAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATCGAAAGTCGTGACGCAGCTGAATCAAGTCATACACTCACAATCAAGAATAATGACAAAGGGAAAAAGATTTTGCAAGACAGTCAGCCCCAAGATTCAACTTCAAACTCCATCAAAGCTCCATATTAA

Coding sequence (CDS)

ATGGCATCTAAAGAAAATGCTTCTAAAGCTTCAAGCGACATTGTCAGAAGATCGATTACTCACAACCGCTCCAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCGGATCTCCAAGAACCCAAAAGCTGGGGTCGTCATTAAAGAAAATTCTACCCTTGACAGGCATACCTCAGCTTCTGAACAATCAAGTGAGGAGGCATCCCACCCAAATGTAATGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAAAATGGTTGAGCTTGCAAAGAAAGTTAACATGCTACTAAAGCCAGTTGAAAAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATCGAAAGTCGTGACGCAGCTGAATCAAGTCATACACTCACAATCAAGAATAATGACAAAGGGAAAAAGATTTTGCAAGACAGTCAGCCCCAAGATTCAACTTCAAACTCCATCAAAGCTCCATATTAA

Protein sequence

MASKENASKASSDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKENSTLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQPQDSTSNSIKAPY

Homology

[Close]

BLAST of Cla010959 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.4e-37
Identity = 89/164 (54.27%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 1   MASKENASKASSDIVRRSITHNRSKEIQL-EEQPTFEITRNIWERISKNPKAGVVIKENS 60
           M S+ N SKA SDI +R  T + S+EIQ  E+   FE+ +NIWE+ISK PK G++IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIASL 120
            +D+H S SE S+EEA  PN+MSVM+ DV TSE +MVEL KKVNML+K VE+RD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESSHTLTIKNNDKG-KKILQDSQPQDSTSNSIKA 163
           KNHIESRD AES+  +  +    G   ILQ  +P+     + KA
Sbjct: 121 KNHIESRDTAESTVEMCTQGMHWGLLYILQGIKPRTFEELAAKA 164

[Close]

BLAST of Cla010959 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 66/183 (36.07%), Postives = 110/183 (60.11%), Query Frame = 1


Query: 1   MASKENASKAS--SDIVRRSITHNRSKEI--QLEEQPTFEITRNIWERISKNPKAGVVIK 60
           MA+ + ASK+S  SD     +T +  K    + E++  F + +   E++ ++PK G++I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENSTLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEI 120
           +N   +  T AS  S ++ASH  V+SVMM DV T+E  + E+ +K+N L+K +E+RD+EI
Sbjct: 61  DNPLFNNSTPASNLS-DKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEI 120

Query: 121 ASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQP---------------QDSTSNSIK 165
           A+LK+ +++ +  ESS T  +K  DKGK ++Q++QP               QD  +NSI+
Sbjct: 121 AALKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIR 180

[Close]

BLAST of Cla010959 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 30  EEQPTFEITRNIWERISKNPKAGVVIKENSTLDRHTSASEQSSEEASHPNVMSVMMADVG 89
           E++  F + +   E++ ++ K G++I++N   +  T  S  S +E SH  V+SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV- 62

Query: 90  TSEEKMVELAKKVNMLLKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQD 149
           T+E  M E+ KK+N L+K VE+RD+EIA+LK+ +++ ++AESS T  +K  DKGK +   
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV-YG 122

Query: 150 SQPQDSTSNSIKAPY 165
             PQ  TS     PY
Sbjct: 123 GPPQ--TSFMYSKPY 132

[Close]

BLAST of Cla010959 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.5e-13
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MASKENASKAS--SDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKEN 60
           MA  + ASKA   +D   R I  + SK    +++    + +  WE++ ++PK G++IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  STLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIAS 120
              +  T AS  S +E SH  V+S+MMADV T E  MVE+  K+N L+K VE+RDY I  
Sbjct: 61  PLFEDSTPASNLSEKE-SHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITV 119

[Close]

BLAST of Cla010959 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.5e-13
Identity = 49/132 (37.12%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 1   MASKENASKAS--SDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKEN 60
           MA ++ ASKA+  +D     +T + SK    E++ +  + +  WE++ ++PK G+ I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  STLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIAS 120
              +  T AS  S +E SH  V+SV+MA V T+E  MVE+ +K+N L+K V+ RD+EI +
Sbjct: 61  PLFNNSTPASNLSDKE-SHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITA 120

Query: 121 LKNHIESRDAAE 131
           L++ +++   AE
Sbjct: 121 LEDQMKACVTAE 130

[Close]

BLAST of Cla010959 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 89/164 (54.27%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 1   MASKENASKASSDIVRRSITHNRSKEIQL-EEQPTFEITRNIWERISKNPKAGVVIKENS 60
           M S+ N SKA SDI +R  T + S+EIQ  E+   FE+ +NIWE+ISK PK G++IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIASL 120
            +D+H S SE S+EEA  PN+MSVM+ DV TSE +MVEL KKVNML+K VE+RD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESSHTLTIKNNDKG-KKILQDSQPQDSTSNSIKA 163
           KNHIESRD AES+  +  +    G   ILQ  +P+     + KA
Sbjct: 121 KNHIESRDTAESTVEMCTQGMHWGLLYILQGIKPRTFEELAAKA 164

[Close]

BLAST of Cla010959 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 66/183 (36.07%), Postives = 110/183 (60.11%), Query Frame = 1


Query: 1   MASKENASKAS--SDIVRRSITHNRSKEI--QLEEQPTFEITRNIWERISKNPKAGVVIK 60
           MA+ + ASK+S  SD     +T +  K    + E++  F + +   E++ ++PK G++I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENSTLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEI 120
           +N   +  T AS  S ++ASH  V+SVMM DV T+E  + E+ +K+N L+K +E+RD+EI
Sbjct: 61  DNPLFNNSTPASNLS-DKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEI 120

Query: 121 ASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQP---------------QDSTSNSIK 165
           A+LK+ +++ +  ESS T  +K  DKGK ++Q++QP               QD  +NSI+
Sbjct: 121 AALKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIR 180

[Close]

BLAST of Cla010959 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.4 bits (228), Expect = 7.7e-16
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 30  EEQPTFEITRNIWERISKNPKAGVVIKENSTLDRHTSASEQSSEEASHPNVMSVMMADVG 89
           E++  F + +   E++ ++ K G++I++N   +  T  S  S +E SH  V+SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV- 62

Query: 90  TSEEKMVELAKKVNMLLKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQD 149
           T+E  M E+ KK+N L+K VE+RD+EIA+LK+ +++ ++AESS T  +K  DKGK +   
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV-YG 122

Query: 150 SQPQDSTSNSIKAPY 165
             PQ  TS     PY
Sbjct: 123 GPPQ--TSFMYSKPY 132

[Close]

BLAST of Cla010959 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 106 LKPVEKRDYEIASLKNHIESRDAAESSHTLTIKNNDKGKKILQDSQPQDSTS 158
           +K VE+RD+EIA LKNHIESRDAAESSHT TIKN +KGK I+Q+SQPQ+STS
Sbjct: 1   MKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTS 52

[Close]

BLAST of Cla010959 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MASKENASKAS--SDIVRRSITHNRSKEIQLEEQPTFEITRNIWERISKNPKAGVVIKEN 60
           MA  + ASKA   +D   R I  + SK    +++    + +  WE++ ++PK G++IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  STLDRHTSASEQSSEEASHPNVMSVMMADVGTSEEKMVELAKKVNMLLKPVEKRDYEIAS 120
              +  T AS  S +E SH  V+S+MMADV T E  MVE+  K+N L+K VE+RDY I  
Sbjct: 61  PLFEDSTPASNLSEKE-SHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITV 119

The following BLAST results are available for this feature:

BLAST of Cla010959 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB0_CUCME	9.4e-37	54.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	9.5e-21	36.07	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	5.4e-16	40.00	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	9.5e-13	41.32	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	9.5e-13	37.12	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla010959 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135887\|gb\|ADN33752.1\|	1.4e-36	54.27	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	1.4e-20	36.07	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	7.7e-16	40.00	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|659074577\|ref\|XP_008437679.1\|	1.0e-12	76.92	PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	1.4e-12	41.32	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010959	Cla010959.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010959	Cucumber (Gy14) v2	cgybwmB043
Cla010959	Melon (DHL92) v3.6.1	medwmB168
Cla010959	Silver-seed gourd	carwmB0740
Cla010959	Cucumber (Chinese Long) v3	cucwmB049
Cla010959	Watermelon (97103) v2	wmwmbB246
Cla010959	Wax gourd	wgowmB500
Cla010959	Cucumber (Gy14) v1	cgywmB345
Cla010959	Cucurbita maxima (Rimu)	cmawmB059
Cla010959	Cucurbita moschata (Rifu)	cmowmB052
Cla010959	Cucurbita moschata (Rifu)	cmowmB378
Cla010959	Watermelon (Charleston Gray)	wcgwmB155
Cla010959	Cucumber (Chinese Long) v2	cuwmB042
Cla010959	Cucurbita pepo (Zucchini)	cpewmB364
Cla010959	Bottle gourd (USVL1VR-Ls)	lsiwmB205