Cla010958 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010958
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Golgi apparatus membrane protein TVP23 (AHRD V1 *- E9DHE5_COCPS); contains Interpro domain(s) IPR008564 Protein of unknown function DUF846, eukaryotic
Location	Chr1 : 18795064 .. 18795729 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTTTGCAGCCACCTGTGGAAAATTATGCTAATCCGAAGACTTGTTTCTTTCATGTTCTTTTCAAGGTAAGGTTATGTTAATATGATATGAATAGACTTCATTCTTGAATGATCTCTGGGCTTTCTGGAATTTATGTGATCATCCTTCTTTTTCAGGCTGGAGCATTGGCTTTTTACATTCTTTCCTCTCTCTTTTTCAGTAGTTTTGTTATCATTTTTGTGGTGACCGTTTTTCTTGCTGCTCTCGACTTTTGGGTCGTGAAGAATGTGAGCGGGCGTATATTGGTTGGTTTAAGGTGGTGGAATGAAATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGGTGAGTGTTTAGTTCTTACATTTTCAGTATTTGCTTCTCATTTATGTTACCAGGAAAACATTTGAATGCTTATTTCTCACTTCTAATGCACATGAATCCTTGGTTATTCTTTAGTCATTGTCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGTAAGCATTATGATCCCAAATATTGTGATAATTTGATTATGTGTTTGCAATAATTTATCAAACAAGCTATATGATTTTGAGAAATAAATTTTATCATATAGATTGAATGAATGTCGGCAGGTATGA

mRNA sequence

ATGCCTCTTTTGCAGCCACCTGTGGAAAATTATGCTAATCCGAAGACTTGTTTCTTTCATGTTCTTTTCAAGGCTGGAGCATTGGCTTTTTACATTCTTTCCTCTCTCTTTTTCAGTAGTTTTGTTATCATTTTTGTGGTGACCGTTTTTCTTGCTGCTCTCGACTTTTGGGTCGTGAAGAATGTGAGCGGGCGTATATTGGTTGGTTTAAGGTGGTGGAATGAAATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGTCATTGTCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGTATGA

Coding sequence (CDS)

ATGCCTCTTTTGCAGCCACCTGTGGAAAATTATGCTAATCCGAAGACTTGTTTCTTTCATGTTCTTTTCAAGGCTGGAGCATTGGCTTTTTACATTCTTTCCTCTCTCTTTTTCAGTAGTTTTGTTATCATTTTTGTGGTGACCGTTTTTCTTGCTGCTCTCGACTTTTGGGTCGTGAAGAATGTGAGCGGGCGTATATTGGTTGGTTTAAGGTGGTGGAATGAAATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGTCATTGTCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGTATGA

Protein sequence

MPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTV

Homology

[Close]

BLAST of Cla010958 vs. Swiss-Prot
Match: TVP23_ARATH (Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-54
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 4   LQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVS 63
           +Q PVENYANP+TC FHVLFK  ALAFYILS+LFF+SFVIIFVVTV LAALDFWVVKNVS
Sbjct: 7   IQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVS 66

Query: 64  GRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYL 112
           GRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL
Sbjct: 67  GRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYL 114

[Close]

BLAST of Cla010958 vs. Swiss-Prot
Match: TVP23_DROME (Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophila melanogaster GN=CG5021 PE=2 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 9   ENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSGRILV 68
           + Y +P   FFH+ F+  A+  Y+    F  SF+  FV  V   + DFW VKN+SGR+LV
Sbjct: 33  QKYTHPYVTFFHLFFRGAAILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLV 92

Query: 69  GLRWWNEINDLGESVWKFESLDQESL-SRMNKKDSWLFWWTLYL 112
           GLRWWN ++D G S W FES + ES  SR+NK +  +FW  L L
Sbjct: 93  GLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLIL 136

[Close]

BLAST of Cla010958 vs. Swiss-Prot
Match: TVP23_YARLI (Golgi apparatus membrane protein TVP23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-21
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 12  ANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSGRILVGLR 71
           ++P    F + F+ GAL  Y+   LF   FV++FV+ V L A DFW VKN++GR++VGLR
Sbjct: 11  SHPVALVFFLAFRLGALFTYMFGLLFTDKFVLMFVLVVLLLAADFWNVKNIAGRLMVGLR 70

Query: 72  WWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLY 111
           WWNE ++ GESVW FE+ D +    +N  DS +FW  LY
Sbjct: 71  WWNEASETGESVWVFETADPQRY--INPIDSKVFWMMLY 107

[Close]

BLAST of Cla010958 vs. Swiss-Prot
Match: TVP23_SCHPO (Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-20
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 12  ANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSGRILVGLR 71
           ++P   FF +LF+ GA+  YIL   F SSF+++F+V   L A+D W VKNVSGR+LVGLR
Sbjct: 46  SHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLR 105

Query: 72  WWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYL 112
           W NE    GES+W FES D       N  D   FW+ LYL
Sbjct: 106 WRNETGVDGESIWIFESADPS--RPRNAVDQKTFWYALYL 143

[Close]

BLAST of Cla010958 vs. Swiss-Prot
Match: TV23A_DICDI (Uncharacterized Golgi apparatus membrane protein-like protein 1 OS=Dictyostelium discoideum GN=DDB_G0276319 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 1


Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSG 64
           QP      +P + FFH+ FK  A+A +ILSS     FV+ F++    +A DFWV KNV+G
Sbjct: 25  QPQSNAPKHPISVFFHLFFKIVAVAIFILSSFVNIGFVLTFIIVTLSSAFDFWVTKNVTG 84

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFW 107
           R LVGLRWWN+I + G + W FES+  +  S++N  +S +FW
Sbjct: 85  RKLVGLRWWNQIKEDGTNNWVFESVQDK--SQVNPAESLMFW 124

[Close]

BLAST of Cla010958 vs. TrEMBL
Match: A0A0A0L2G2_CUCSA (Golgi apparatus membrane protein TVP23 OS=Cucumis sativus GN=Csa_4G499830 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.6e-57
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPPVENYANPKTCFFHVLFKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVKNVSG
Sbjct: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 64

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT
Sbjct: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 112

[Close]

BLAST of Cla010958 vs. TrEMBL
Match: A9PJZ6_9ROSI (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.1e-55
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           M  +QPPVENYANPKTCFFHVLFKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPIQPPVENYANPKTCFFHVLFKAGALAFYILSTLFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYL 112
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYL 111

[Close]

BLAST of Cla010958 vs. TrEMBL
Match: B9I6P4_POPTR (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa GN=POPTR_0013s00770g PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.1e-55
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           M  +QPPVENYANPKTCFFHVLFKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPIQPPVENYANPKTCFFHVLFKAGALAFYILSTLFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYL 112
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYL 111

[Close]

BLAST of Cla010958 vs. TrEMBL
Match: B9N466_POPTR (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa GN=POPTR_0005s01380g PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-54
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPP ENYANPKTCFFHVLFKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVKNVSG
Sbjct: 5   QPPGENYANPKTCFFHVLFKAGALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSG 64

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           RILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLY+T
Sbjct: 65  RILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYIT 112

[Close]

BLAST of Cla010958 vs. TrEMBL
Match: W9R2Q7_9ROSA (Golgi apparatus membrane protein TVP23 OS=Morus notabilis GN=L484_018890 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-53
Identity = 103/112 (91.96%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           M L QP  ENYANPKTCFFHVLFKAGALAFYILS+LFF SFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDLNQPVGENYANPKTCFFHVLFKAGALAFYILSALFFDSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           NVSGRILVGLRWWNEINDLGESVWKFE LDQESL+RMNKKDSWLFWWTLYLT
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFECLDQESLARMNKKDSWLFWWTLYLT 112

[Close]

BLAST of Cla010958 vs. NCBI nr
Match: gi|659082975|ref|XP_008442124.1| (PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA isoform X1 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-58
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           +PLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 2   IPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 61

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT
Sbjct: 62  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113

[Close]

BLAST of Cla010958 vs. NCBI nr
Match: gi|449466803|ref|XP_004151115.1| (PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPPVENYANPKTCFFHVLFKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVKNVSG
Sbjct: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 64

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT
Sbjct: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 112

[Close]

BLAST of Cla010958 vs. NCBI nr
Match: gi|224122876|ref|XP_002318938.1| (FAM18-like family protein [Populus trichocarpa])

HSP 1 Score: 221.9 bits (564), Expect = 5.8e-55
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MPLLQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           M  +QPPVENYANPKTCFFHVLFKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPIQPPVENYANPKTCFFHVLFKAGALAFYILSTLFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYL 112
           NVSGRILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLYL
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYL 111

[Close]

BLAST of Cla010958 vs. NCBI nr
Match: gi|566168759|ref|XP_006382357.1| (hypothetical protein POPTR_0005s01380g [Populus trichocarpa])

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPP ENYANPKTCFFHVLFKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVKNVSG
Sbjct: 5   QPPGENYANPKTCFFHVLFKAGALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSG 64

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           RILVGLRWWNEINDLGESVWKFESLDQESL+RMNKKDSWLFWWTLY+T
Sbjct: 65  RILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYIT 112

[Close]

BLAST of Cla010958 vs. NCBI nr
Match: gi|743890144|ref|XP_011038956.1| (PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Populus euphratica])

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-53
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 5   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNVSG 64
           QPP ENYANPKTCFFHVLFKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVKNVSG
Sbjct: 5   QPPGENYANPKTCFFHVLFKAGALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSG 64

Query: 65  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLT 113
           RILVGLRWWNEINDLGESVWKFESLDQESL+RMNKK SWLFWWTLY+T
Sbjct: 65  RILVGLRWWNEINDLGESVWKFESLDQESLARMNKKGSWLFWWTLYIT 112

The following BLAST results are available for this feature:

BLAST of Cla010958 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TVP23_ARATH	6.4e-54	90.74	Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN...	[more]
TVP23_DROME	1.1e-21	46.15	Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophi...	[more]
TVP23_YARLI	9.4e-21	47.47	Golgi apparatus membrane protein TVP23 OS=Yarrowia lipolytica (strain CLIB 122 /...	[more]
TVP23_SCHPO	1.6e-20	50.00	Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
TV23A_DICDI	1.8e-19	45.10	Uncharacterized Golgi apparatus membrane protein-like protein 1 OS=Dictyostelium...	[more]

BLAST of Cla010958 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2G2_CUCSA	9.6e-57	99.07	Golgi apparatus membrane protein TVP23 OS=Cucumis sativus GN=Csa_4G499830 PE=3 S...	[more]
A9PJZ6_9ROSI	4.1e-55	93.69	Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa x Populus deltoide...	[more]
B9I6P4_POPTR	4.1e-55	93.69	Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa GN=POPTR_0013s0077...	[more]
B9N466_POPTR	2.6e-54	94.44	Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa GN=POPTR_0005s0138...	[more]
W9R2Q7_9ROSA	2.2e-53	91.96	Golgi apparatus membrane protein TVP23 OS=Morus notabilis GN=L484_018890 PE=3 SV...	[more]

BLAST of Cla010958 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082975\|ref\|XP_008442124.1\|	1.9e-58	98.21	PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA isoform X1 [Cuc...	[more]
gi\|449466803\|ref\|XP_004151115.1\|	1.4e-56	99.07	PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Cucumis sativu...	[more]
gi\|224122876\|ref\|XP_002318938.1\|	5.8e-55	93.69	FAM18-like family protein [Populus trichocarpa]	[more]
gi\|566168759\|ref\|XP_006382357.1\|	3.8e-54	94.44	hypothetical protein POPTR_0005s01380g [Populus trichocarpa]	[more]
gi\|743890144\|ref\|XP_011038956.1\|	2.4e-53	93.52	PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Populus euphra...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008564	TVP23-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007030	Golgi organization
biological_process	GO:0009306	protein secretion
biological_process	GO:0009826	unidimensional cell growth
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005768	endosome
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0030173	integral component of Golgi membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU61578	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010958	Cla010958.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU61578	WMU61578	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008564	Protein of unknown function DUF846, eukaryotic	PANTHER	PTHR13019	UNCHARACTERIZED	coord: 9..112 score: 2.5
IPR008564	Protein of unknown function DUF846, eukaryotic	PFAM	PF05832	DUF846	coord: 13..112 score: 3.5
None	No IPR available	PANTHER	PTHR13019:SF14	SUBFAMILY NOT NAMED	coord: 9..112 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010958	Cla97C01G010600	Watermelon (97103) v2	wmwmbB246
Cla010958	ClCG01G010840	Watermelon (Charleston Gray)	wcgwmB155
Cla010958	CmaCh10G011690	Cucurbita maxima (Rimu)	cmawmB059
Cla010958	CmoCh10G012480	Cucurbita moschata (Rifu)	cmowmB052
Cla010958	Lsi02G011440	Bottle gourd (USVL1VR-Ls)	lsiwmB205
Cla010958	Cp4.1LG18g00100	Cucurbita pepo (Zucchini)	cpewmB364
Cla010958	Carg27419	Silver-seed gourd	carwmB0740

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010958	Cucumber (Chinese Long) v3	cucwmB049
Cla010958	Wax gourd	wgowmB500
Cla010958	Cucumber (Gy14) v1	cgywmB345
Cla010958	Cucurbita moschata (Rifu)	cmowmB378
Cla010958	Cucumber (Chinese Long) v2	cuwmB042
Cla010958	Cucumber (Gy14) v2	cgybwmB043
Cla010958	Melon (DHL92) v3.6.1	medwmB168