Carg27419 (gene) Silver-seed gourd

Overview
NameCarg27419
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGolgi apparatus membrane protein TVP23
LocationCucurbita_argyrosperma_scaffold_413 : 135409 .. 140270 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATTTTCCTCGGCGAGCGCGTAGCGACGGAGGGAGCGGCGTTTACTCCTCATTTCTGCATCCCCAAACGCAAATTCAACCCATACCAGCAAGAAAAAATTGTGCAAAATCTCACAGTTTCCCGATCATGGATCCGAACCAGGTAAAATTCGCTAGTTTCAACTTTTTTAGATCTTCCTCATCTTTAATTTCTTTAATTATCATCTTTACATGCTTATAGATGTTGTTAATCTTCTGGTTAAGGCATTTTCGCTTCCTTGCCCCTGTTGAATGCTAGATCTAATCGAAAATTTCCGTCTGGAGCTACAATGGTGGTTGTTTTTTTCTTTTGTTTTGTCGGTTGATTGGGAGGATCAAGGGTAGAACATCTGTTGAACGAACAAATCCGCGATTAATGTAAGATCTGAGTTGACGACGGGCAGATTATGATGGAATTTCAAATTAGCAATGGTTGAATTTCAACTTGTTTAGATTTTAGAATGCTTCCAGTTCTTGAATCATAGGATTGAGCGCGTTATTGGGTATCAGTTTGTGAAATTGGGGTTACATTGTGCCTCTTGAGTTGGAAGGTTTTTACAGTGTAATTGCTATTGTATGACTCATACGATGCCTCTTTTGCAGCCACCCGTAGAAAATTATGCTAACCCGAAGACTTGTTTCTTTCATGTCTTTTTTAAGGTAAGGCTATGTTACTATGATGTCAATGGATTTTCATTCTTGAATGATCTCTGAGCTTTCTGGGATTTATGTGATCGTGGTTCTTCTTTTTCAGGCTGGAGCATTGGCTTTTTACATTCTTTCCTCTCTATTTTTCAGCAGTTTTGTTATCATTTTTGTGGTGACTGTTTTTCTCGCTGCTCTCGACTTTTGGGTTGTGAAGAATTTGAGTGGACGTATATTGGTCGGTTTAAGGTGGTGGAATGAAATAGATGATATGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGGTGAGTGTTCTAGTTCTTACATTTTCAGAATTTGCTTCTCATTTGTGTTACCGGGACAAAATTTTAAATGCCTGTTTCTCACTTCTAATGCTCATGGATCCTTGGTTATTCTTTAGTCATTGGCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGTAAGAAAATATAATGATTCCAAATATTGTGATAATTTGATTATATGTTTGCGGTATTTTATCTAATAAGGTTGGTGATTTCGAGAAATAAATTTTATCATATCGATACGAGTGAATGTCAGAAGGTATGATACCTGAAAGAGAATAGTGATTTATTCGTTGCAGTTAACGTACATGTCTAAAGCTTAGTAAATCTGGTGACAGGCCAGTCACTTTGATTTTATGTTTTCTTTTGTTGATGGCAGGGTGGGGGAAATTAAAGAAATTACGTATTCAAGAAAAAACCACTTTTATGTTATTTTTTAAATTTTGTTTTCCCTCAAACTTACATTACTATTGACTGATTTTCTGGTTCAGCTGATCTTAAAATTTACATTTATTCAAAGATGCAAATATAGTGGTTAAATTATAAATGGTAAGTAATGTTCTTGAACTAAAAATTAGTCACTTACCTTAGAACTGATAGAACCAGGAAAAGTGTTTTGTAACATCCTCTTGATAGTTTCTCTAAAGCGTGGATTTTCTTCATTTTGTAATTTGATTTAATCAATGAAATTTTCTGTTTCTTGTATAAAAAACAATAATCTTCAATATTCACGTATGCTTATGCGTCTGAACCTATGAGTAACAGGCAGTTGCATGGACTGTGCTGGGCATATTCTCGTTGATAAAGTTTCAAGCTGATTATCTCCTCGTCGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATTATCGGCTTTACAAAATGTCGTAAAGGTAAGCAATGCGTTCCATGAACTACAAAAATCCTATAGTGTTCGTACAAGCACTACAAAGCCTGATTTATTATAGTAATCTCTCTGTCGGTAATAGCTTCTGATTCCATGAAAAGCTTCTGAATTTTTTTTGAAGCTTTTAGAAAATTGTTTCTAAACTTCAAGGGATATATCATTGTGAAACCCTGCCTGCTGTTTGTTATTTTGTTAGCTGGCTTTATATTTCAGTCATTGTTAGAAGATATTGAGTTCAGTAGGGACTTGATGCTTAAATCTTTGCCATGGAAAGGATACTGTAGAAAAAAGAAGATTTGTTGCAATGTAGCTCCATAGGAACCATAAATAGAAAGACGTAAAATATTAGCAAAAATAGAGATCTTAGGCGCAATAGAAAGGAATGTCGTAACGGTGGGTGAAGGTTCAGGAGCAAGCCTGCTTCGGTAGTGATAGTTGCTTCAAAGGAGATATGGAGTCGGTGGGGGTTTTTCTTCTGGGCTTGAGAAATGGAATTAGATAGGACCCACAAATTGAGAATTTTCCAGTGTGGAATAGGGAACGAGGAGCATGTGAGGATATGAGAAGATAGATATCTCTATTTTGTTTGTGACCTTTATGCTTGTTGTGGACCTTAGTAACTTGTAATGTAGTTCTTAGACACATAGACATGCATAGTGATACAAATGGCTCATATATATATGGTTAATTCCTAAAGTATCCAATGCATCAACTTCTTCAATGAACCCCTTAACCATTATTTTTTTCTACAAGGAACCGAGTTGCATGGACGGAACGAAATATTTAACATGAGGCAAAATCTCATTGAATTAAAAGTATGTGATCGAAAGACAAGAAATCGGATGATTATAAAGAAATTTAGACAAGGAACTTGATGAGGAAGCCATGAAAATAGTAAAATTCTATTAGTCTCCCAAGAGATCTCCAAATTCAGACACTTCCCCTAGAATAGTTTAGATCCCAAAAAGCCATAGAAATTGTTCATCCTTGAACATAAGTGAAAGACCAACCAAAAGATGAACAACAGCTCCTTAACGTGATATGGAATCAACCCAAGGGAAAGTTTTGGAACAGATTACCTTGATGATCAAGATCAAAAGTAAAGAAAACTCGTTTCTAAACTCCTGATTCGAATCACTCCACAAGATAGTTTGATCAAAACTTCTTGAATGACTCTAACATGCAAATTTAAACACAAGAAATGCAACGTAACAAGCTCATGACTTAAGAAAAGCATAATATGCAACTTTCATTATATCTAAAATCTTCGTACTAAAGCAACAACATGAATGACTATTTATAGTTTTGGAAATAAACCTTATGGTAACCTAATTGAAAGATGGTAACTTTCATGATCATCAATACCATAATGGTCACTAGCTAATTGTAACTTATAATCTTAAACGCTTCTCGCAGGGCAGCTTCAAGTTAAAAAATATCAAACGACCTCCACTCAGGATCATCTCTTTCTTCATACCTTTTTCACATATTATACTGGGGCAAAGAATGAAATTGATGTTTGTGTGCATAATGAAAGTCAAATTTTTTTCAGTTGTCGTTACCCTTTTCCTAACATTTTCAGGACATCCATTATAGGGCCGTTCTTTAGTCCAGCATCCCGCAGTCTCCTACTACTAAAATAGGTGGAGGGGGTTTAGATATAAAAATCAAATACCTGTCTTGTCGTGCATTATATACATATATTCACACATGCGCACACACGTATGTATGTATTCTTTTGGTAAATAATGTGCCTCTTCATTGACATGAAACAGCTTTCAAATAGGACTATATTTGGCACTGGGAAGTTCGTAGGATACCTTCTTAGATAGGTCATCACCATGATTTTGAACCATGTTCTCAAAGTTGTCCGAACAAACAACTTTTCCTTTACCAATTACAGCCATTTTAGTACTACTACTGCACATGTTGATGTATTTGCCAACTAATTAGGCACTCAAACTGATAGTTCATAACTGCCGGGGAAATTGCACCCACCTTTCTTCTAAGACTCATCAAGCTTGTAATGGCCCAAGTCCACCGCTAGCAGATATTATCCTCTTTGGACTTTTCTTTTCGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGCGGTTTCCACACCCTTATAAAAAATGTTTCGTTCTCCTCTCCAACTGATTGAGATTTCACAATCCGCCTGTGCAAACACATGCTACTCATGAGTTAGGGACCTATCATTAAAACCATCTTAAGATAGTGGTATTTTATTTCCTAGACATTAGGTTAGGATAGGATGTTTTTACTTTTATTGTTCATTTGTTTCATTTAGTATTTCGTTATGTTGTTTTAAAAATGTTTTCAAACACACAAGTCCATGACAATGTTTTATGATGAAGTTTTAAATGTTCAATTCCGCATAAGAGCATAGGTTATAACGATGGTAACGACTTTAGGTTAGTAGCAACCTAGGGTCGTTACAGTTAGATATTGCCACTCAGTCATGGGTTGACTCAAATTTTTGTAATTCTTACCCCGCCCTCTTTTTTCTTCTTTACACTCTTCTCCTAAGACTGATTTAGGCATTGATGAAATTATTGGCATTTGGGCTGATGGTGTTGCTAATAACTTTCAGATGCGAAGAAGCAGTTTCAGCAATTTGCCACGCAGACCATTGCTTCTCAGTTCTCTTCTACATTACAATCAGCCTTTAGTGTATGAGGCGTCCATACCATATGTGAATGAAAGCAGACGGAAGCGCAAGAGATGTGTTGAGCAGCAGCTCTCAGGGCATGTAAATATGCATTGTTTTAGGCATTACTGGATTGAACTTTCTTTTTTGGTTATACAAAGAAAAAATATTGAATAACTTTGTATGTCTCCCTTTTACCAATGTTTTGTATTGTGATGATCCAATGAAATGAATAGTAGAAAAAAATATTAATTTTGCT

mRNA sequence

TCAATTTTCCTCGGCGAGCGCGTAGCGACGGAGGGAGCGGCGTTTACTCCTCATTTCTGCATCCCCAAACGCAAATTCAACCCATACCAGCAAGAAAAAATTGTGCAAAATCTCACAGTTTCCCGATCATGGATCCGAACCAGCCACCCGTAGAAAATTATGCTAACCCGAAGACTTGTTTCTTTCATGTCTTTTTTAAGGCTGGAGCATTGGCTTTTTACATTCTTTCCTCTCTATTTTTCAGCAGTTTTGTTATCATTTTTGTGGTGACTGTTTTTCTCGCTGCTCTCGACTTTTGGGTTGTGAAGAATTTGAGTGGACGTATATTGGTCGGTTTAAGGTGGTGGAATGAAATAGATGATATGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGTCATTGGCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGCAGTTGCATGGACTGTGCTGGGCATATTCTCGTTGATAAAGTTTCAAGCTGATTATCTCCTCGTCGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATTATCGGCTTTACAAAATGTCGTAAAGATGCGAAGAAGCAGTTTCAGCAATTTGCCACGCAGACCATTGCTTCTCAGTTCTCTTCTACATTACAATCAGCCTTTAGTGTATGAGGCGTCCATACCATATGTGAATGAAAGCAGACGGAAGCGCAAGAGATGTGTTGAGCAGCAGCTCTCAGGGCATGTAAATATGCATTGTTTTAGGCATTACTGGATTGAACTTTCTTTTTTGGTTATACAAAGAAAAAATATTGAATAACTTTGTATGTCTCCCTTTTACCAATGTTTTGTATTGTGATGATCCAATGAAATGAATAGTAGAAAAAAATATTAATTTTGCT

Coding sequence (CDS)

ATGGATCCGAACCAGCCACCCGTAGAAAATTATGCTAACCCGAAGACTTGTTTCTTTCATGTCTTTTTTAAGGCTGGAGCATTGGCTTTTTACATTCTTTCCTCTCTATTTTTCAGCAGTTTTGTTATCATTTTTGTGGTGACTGTTTTTCTCGCTGCTCTCGACTTTTGGGTTGTGAAGAATTTGAGTGGACGTATATTGGTCGGTTTAAGGTGGTGGAATGAAATAGATGATATGGGTGAGAGTGTGTGGAAATTTGAAAGCCTTGATCAAGAGTCATTGGCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTACCTCACGGCAGTTGCATGGACTGTGCTGGGCATATTCTCGTTGATAAAGTTTCAAGCTGATTATCTCCTCGTCGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATTATCGGCTTTACAAAATGTCGTAAAGATGCGAAGAAGCAGTTTCAGCAATTTGCCACGCAGACCATTGCTTCTCAGTTCTCTTCTACATTACAATCAGCCTTTAGTGTATGA

Protein sequence

MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV
Homology
[Close]
BLAST of Carg27419 vs. NCBI nr
Match: XP_022961589.1 (Golgi apparatus membrane protein-like protein ECHIDNA isoform X2 [Cucurbita moschata] >XP_023515688.1 Golgi apparatus membrane protein-like protein ECHIDNA [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.8 bits (917), Expect = 2.1e-95
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. NCBI nr
Match: XP_022968800.1 (Golgi apparatus membrane protein-like protein ECHIDNA [Cucurbita maxima])

HSP 1 Score: 357.8 bits (917), Expect = 2.1e-95
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. NCBI nr
Match: XP_004151115.1 (PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Cucumis sativus] >XP_008442125.1 PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA isoform X2 [Cucumis melo] >KGN54797.1 hypothetical protein Csa_4G499830 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 9.9e-93
Identity = 176/182 (96.70%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. NCBI nr
Match: XP_022961588.1 (Golgi apparatus membrane protein-like protein ECHIDNA isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 

Query: 5   QPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSG 64
           QPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSG
Sbjct: 9   QPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSG 68

Query: 65  RILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSL 124
           RILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSL
Sbjct: 69  RILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSL 128

Query: 125 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV 183
           IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV
Sbjct: 129 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV 186

[Close]
BLAST of Carg27419 vs. NCBI nr
Match: XP_022159687.1 (Golgi apparatus membrane protein-like protein ECHIDNA [Momordica charantia])

HSP 1 Score: 344.7 bits (883), Expect = 1.9e-91
Identity = 173/182 (95.05%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTA AWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAAAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLS+ANIIGFTKCRKDAKKQ QQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSVANIIGFTKCRKDAKKQLQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. TAIR10
Match: AT1G09330.1 (unknown protein)

HSP 1 Score: 310.5 bits (794), Expect = 7.1e-85
Identity = 154/185 (83.24%), Postives = 172/185 (92.97%), Query Frame = 0 

Query: 1   MDPN---QPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFW 60
           MDPN   Q PVENYANP+TC FHV FK  ALAFYILS+LFF+SFVIIFVVTV LAALDFW
Sbjct: 1   MDPNNQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFW 60

Query: 61  VVKNLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWT 120
           VVKN+SGRILVGLRWWNEI+D+GESVWKFESLDQESLARMNKKDSWLFWWTLYL A AW 
Sbjct: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWF 120

Query: 121 VLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQ 180
           +LG+FSLI+FQADYLLVVGVCL+L++ANIIGFTKC+KDAKKQFQQFA+QTIAS+F ST+Q
Sbjct: 121 ILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQ 180

Query: 181 SAFSV 183
           SAF++
Sbjct: 181 SAFTL 185

[Close]
BLAST of Carg27419 vs. Swiss-Prot
Match: sp|Q8LEK2|TVP23_ARATH (Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana OX=3702 GN=ECH PE=1 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-83
Identity = 154/185 (83.24%), Postives = 172/185 (92.97%), Query Frame = 0 

Query: 1   MDPN---QPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFW 60
           MDPN   Q PVENYANP+TC FHV FK  ALAFYILS+LFF+SFVIIFVVTV LAALDFW
Sbjct: 1   MDPNNQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFW 60

Query: 61  VVKNLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWT 120
           VVKN+SGRILVGLRWWNEI+D+GESVWKFESLDQESLARMNKKDSWLFWWTLYL A AW 
Sbjct: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWF 120

Query: 121 VLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQ 180
           +LG+FSLI+FQADYLLVVGVCL+L++ANIIGFTKC+KDAKKQFQQFA+QTIAS+F ST+Q
Sbjct: 121 ILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQ 180

Query: 181 SAFSV 183
           SAF++
Sbjct: 181 SAFTL 185

[Close]
BLAST of Carg27419 vs. Swiss-Prot
Match: sp|Q8IQC1|TVP23_DROME (Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophila melanogaster OX=7227 GN=CG5021 PE=2 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 6.2e-30
Identity = 68/165 (41.21%), Postives = 97/165 (58.79%), Query Frame = 0 

Query: 9   ENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSGRILV 68
           + Y +P   FFH+FF+  A+  Y+    F  SF+  FV  V   + DFW VKN+SGR+LV
Sbjct: 33  QKYTHPYVTFFHLFFRGAAILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLV 92

Query: 69  GLRWWNEIDDMGESVWKFESLDQESL-ARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKF 128
           GLRWWN +DD G S W FES + ES  +R+NK +  +FW  L L  V W +  +F+L   
Sbjct: 93  GLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGL 152

Query: 129 QADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQF 173
           +  +LL+V + + L+ AN+ G+ KC   A K     AT  + +QF
Sbjct: 153 KFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQF 197

[Close]
BLAST of Carg27419 vs. Swiss-Prot
Match: sp|Q86I95|TV23A_DICDI (Uncharacterized Golgi apparatus membrane protein-like protein 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0276319 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-27
Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 0 

Query: 4   NQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLS 63
           +QP      +P + FFH+FFK  A+A +ILSS     FV+ F++    +A DFWV KN++
Sbjct: 24  SQPQSNAPKHPISVFFHLFFKIVAVAIFILSSFVNIGFVLTFIIVTLSSAFDFWVTKNVT 83

Query: 64  GRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFS 123
           GR LVGLRWWN+I + G + W FES+  +S  ++N  +S +FW  +     AW V  I S
Sbjct: 84  GRKLVGLRWWNQIKEDGTNNWVFESVQDKS--QVNPAESLMFWVPVLAFTAAWFVFSIIS 143

Query: 124 LIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQF----QQFATQTIASQ 172
           L      +L+V  VC  L+ AN++G+ KC KDA+K+     Q +   TI +Q
Sbjct: 144 LFGLSFLWLVVEIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYIVGTIVNQ 193

[Close]
BLAST of Carg27419 vs. Swiss-Prot
Match: sp|Q9Y7K7|TVP23_SCHPO (Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tvp23 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 68/167 (40.72%), Postives = 99/167 (59.28%), Query Frame = 0 

Query: 12  ANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSGRILVGLR 71
           ++P   FF + F+ GA+  YIL   F SSF+++F+V   L A+D W VKN+SGR+LVGLR
Sbjct: 46  SHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLR 105

Query: 72  WWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKFQADY 131
           W NE    GES+W FES D       N  D   FW+ LYL    W +LGI ++I+F+  +
Sbjct: 106 WRNETGVDGESIWIFESADPS--RPRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLW 165

Query: 132 LLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQS 179
           L +V V + L+  N   +++C KDAK+++      + +S F S   S
Sbjct: 166 LALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLS 210

[Close]
BLAST of Carg27419 vs. Swiss-Prot
Match: sp|Q29S14|TV23B_BOVIN (Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus OX=9913 GN=TVP23B PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-26
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 0 

Query: 4   NQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLS 63
           N+P      +P   FFH+FF+  A+  Y+L  LF SSF+   V  + L + DFW VKN++
Sbjct: 24  NRPKKSRIRHPVASFFHLFFRVSAIIVYLLCELFSSSFIACMVTIILLLSCDFWAVKNVT 83

Query: 64  GRILVGLRWWNEIDDMGESVWKFES--LDQESLARMNKKDSWLFWWTLYLTAVAWTVLGI 123
           GR++VGLRWWN ID+ G+S W FES     +    +++ +S +FW  L    V W V   
Sbjct: 84  GRLMVGLRWWNHIDEDGKSHWVFESRKASPQEGKTVSEAESRIFWLGLVACPVLWVVFAF 143

Query: 124 FSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQF 173
            +L  F+  +L VV + + L  AN+ G+ +C+  ++K     AT  +  QF
Sbjct: 144 SALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATTYLGRQF 194

[Close]
BLAST of Carg27419 vs. TrEMBL
Match: tr|A0A1S3B4J1|A0A1S3B4J1_CUCME (Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 6.5e-93
Identity = 176/182 (96.70%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. TrEMBL
Match: tr|A0A0A0L2G2|A0A0A0L2G2_CUCSA (Golgi apparatus membrane protein TVP23 OS=Cucumis sativus OX=3659 GN=Csa_4G499830 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 6.5e-93
Identity = 176/182 (96.70%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDPNQPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVK
Sbjct: 1   MDPNQPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTAVAWTVLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF
Sbjct: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. TrEMBL
Match: tr|A0A1S4DU76|A0A1S4DU76_CUCME (Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 172/178 (96.63%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 5   QPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVKNLSG 64
           QPPVENYANPKTCFFHV FKAGALAFYILSSLFF+SFVIIFVVTVFLAALDFWVVKN+SG
Sbjct: 6   QPPVENYANPKTCFFHVLFKAGALAFYILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSG 65

Query: 65  RILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSL 124
           RILVGLRWWNEI+D+GESVWKFESLDQESL+RMNKKDSWLFWWTLYLTAVAWTVLGIFSL
Sbjct: 66  RILVGLRWWNEINDLGESVWKFESLDQESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSL 125

Query: 125 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV 183
           IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV
Sbjct: 126 IKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAFSV 183

[Close]
BLAST of Carg27419 vs. TrEMBL
Match: tr|B9N466|B9N466_POPTR (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa OX=3694 GN=POPTR_005G010400v3 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 9.1e-87
Identity = 163/182 (89.56%), Postives = 176/182 (96.70%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDP+QPP ENYANPKTCFFHV FKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPSQPPGENYANPKTCFFHVLFKAGALAFYILSALFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESLARMNKKDSWLFWWTLY+TAVAW VLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYITAVAWIVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLI+FQADY L+VGVCLTLSIANI+GFTKCRKDAKKQFQQFA+QTIAS+ SST+QSAF
Sbjct: 121 IFSLIRFQADYCLIVGVCLTLSIANIVGFTKCRKDAKKQFQQFASQTIASRVSSTIQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

[Close]
BLAST of Carg27419 vs. TrEMBL
Match: tr|A9PJZ6|A9PJZ6_9ROSI (Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 7.7e-86
Identity = 162/182 (89.01%), Postives = 173/182 (95.05%), Query Frame = 0 

Query: 1   MDPNQPPVENYANPKTCFFHVFFKAGALAFYILSSLFFSSFVIIFVVTVFLAALDFWVVK 60
           MDP QPPVENYANPKTCFFHV FKAGALAFYILS+LFF+SFVIIFVVTV LAALDFWVVK
Sbjct: 1   MDPIQPPVENYANPKTCFFHVLFKAGALAFYILSTLFFNSFVIIFVVTVLLAALDFWVVK 60

Query: 61  NLSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLG 120
           N+SGRILVGLRWWNEI+D+GESVWKFESLDQESLARMNKKDSWLFWWTLYL A AW VLG
Sbjct: 61  NVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWIVLG 120

Query: 121 IFSLIKFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQQFATQTIASQFSSTLQSAF 180
           IFSLI+F+ DY L+VGVCLTLSIANI+GFTKCRKDAKKQFQQFATQTIAS+ SST+QSAF
Sbjct: 121 IFSLIRFEPDYCLIVGVCLTLSIANIVGFTKCRKDAKKQFQQFATQTIASRVSSTIQSAF 180

Query: 181 SV 183
           SV
Sbjct: 181 SV 182

The following BLAST results are available for this feature:
BLAST of Carg27419 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961589.12.1e-95100.00Golgi apparatus membrane protein-like protein ECHIDNA isoform X2 [Cucurbita mosc... [more]
XP_022968800.12.1e-95100.00Golgi apparatus membrane protein-like protein ECHIDNA [Cucurbita maxima][more]
XP_004151115.19.9e-9396.70PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Cucumis sativu... [more]
XP_022961588.11.3e-92100.00Golgi apparatus membrane protein-like protein ECHIDNA isoform X1 [Cucurbita mosc... [more]
XP_022159687.11.9e-9195.05Golgi apparatus membrane protein-like protein ECHIDNA [Momordica charantia][more]
BLAST of Carg27419 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09330.17.1e-8583.24unknown protein[more]
BLAST of Carg27419 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LEK2|TVP23_ARATH1.3e-8383.24Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana OX... [more]
sp|Q8IQC1|TVP23_DROME6.2e-3041.21Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophi... [more]
sp|Q86I95|TV23A_DICDI6.4e-2740.70Uncharacterized Golgi apparatus membrane protein-like protein 1 OS=Dictyostelium... [more]
sp|Q9Y7K7|TVP23_SCHPO2.4e-2640.72Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe (strain 972 ... [more]
sp|Q29S14|TV23B_BOVIN3.2e-2636.84Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus OX=9913 GN=TVP23B... [more]
BLAST of Carg27419 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4J1|A0A1S3B4J1_CUCME6.5e-9396.70Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 P... [more]
tr|A0A0A0L2G2|A0A0A0L2G2_CUCSA6.5e-9396.70Golgi apparatus membrane protein TVP23 OS=Cucumis sativus OX=3659 GN=Csa_4G49983... [more]
tr|A0A1S4DU76|A0A1S4DU76_CUCME4.0e-9096.63Golgi apparatus membrane protein TVP23 OS=Cucumis melo OX=3656 GN=LOC103486078 P... [more]
tr|B9N466|B9N466_POPTR9.1e-8789.56Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa OX=3694 GN=POPTR_0... [more]
tr|A9PJZ6|A9PJZ6_9ROSI7.7e-8689.01Golgi apparatus membrane protein TVP23 OS=Populus trichocarpa x Populus deltoide... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008564TVP23-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27419-RACarg27419-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008564Golgi apparatus membrane protein TVP23-likePFAMPF05832DUF846coord: 13..152
e-value: 6.0E-48
score: 162.3
IPR008564Golgi apparatus membrane protein TVP23-likePANTHERPTHR13019UNCHARACTERIZEDcoord: 1..182
NoneNo IPR availablePANTHERPTHR13019:SF14SUBFAMILY NOT NAMEDcoord: 1..182

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27419Cla010958Watermelon (97103) v1carwmB0740
Carg27419ClCG01G010840Watermelon (Charleston Gray)carwcgB0720
Carg27419CmaCh10G011690Cucurbita maxima (Rimu)carcmaB1039
Carg27419CmoCh10G012480Cucurbita moschata (Rifu)carcmoB1011
Carg27419Lsi02G011440Bottle gourd (USVL1VR-Ls)carlsiB680
Carg27419Cp4.1LG18g00100Cucurbita pepo (Zucchini)carcpeB1046
Carg27419Cla97C01G010600Watermelon (97103) v2carwmbB0778
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None