Cla010775 (gene) Watermelon (97103) v1

Overview
NameCla010775
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLipid transfer protein (AHRD V1 **** Q42158_ARATH); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical
LocationChr7 : 29746236 .. 29746484 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTTTCTCAGCGGAGCTCGTGTGGCGGAGGCGGTGACTTGCAGCCCTTCGGAGCTGAGCTCATGTGCGGGGGCAATCTGGTCGTCATCGTCGAATCCATCGAGCTTTTGCTGCAGTAAGTTGAGAGAGCAACAACCATGCCTTTGTGGGTACATAAGGAACCCATCCTTAAGGCCTTATGTGCAATCTCCTGGCGCTAAATCTGTGGCTTCCAAGTGTGGTGTTCCCTTCCCCAGCTGCTAG

mRNA sequence

ATGGCTGTTTTTCTCAGCGGAGCTCGTGTGGCGGAGGCGGTGACTTGCAGCCCTTCGGAGCTGAGCTCATGTGCGGGGGCAATCTGGTCGTCATCGTCGAATCCATCGAGCTTTTGCTGCAGTAAGTTGAGAGAGCAACAACCATGCCTTTGTGGGTACATAAGGAACCCATCCTTAAGGCCTTATGTGCAATCTCCTGGCGCTAAATCTGTGGCTTCCAAGTGTGGTGTTCCCTTCCCCAGCTGCTAG

Coding sequence (CDS)

ATGGCTGTTTTTCTCAGCGGAGCTCGTGTGGCGGAGGCGGTGACTTGCAGCCCTTCGGAGCTGAGCTCATGTGCGGGGGCAATCTGGTCGTCATCGTCGAATCCATCGAGCTTTTGCTGCAGTAAGTTGAGAGAGCAACAACCATGCCTTTGTGGGTACATAAGGAACCCATCCTTAAGGCCTTATGTGCAATCTCCTGGCGCTAAATCTGTGGCTTCCAAGTGTGGTGTTCCCTTCCCCAGCTGCTAG

Protein sequence

MAVFLSGARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAKSVASKCGVPFPSC
Homology
[Close]
BLAST of Cla010775 vs. Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.5e-23
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1 

Query: 10 VAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAK 69
          VAEAVTC+P+ELSSC  AI +  S PSS CCSKL+ Q+PCLC YI+NPSL+ YV SPGAK
Sbjct: 28 VAEAVTCNPTELSSCVPAI-TGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAK 87

Query: 70 SVASKCGVPFPSC 83
           V S CGV +P+C
Sbjct: 88 KVLSNCGVTYPNC 99

[Close]
BLAST of Cla010775 vs. Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-20
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 14 VTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAKSVAS 73
          VTCSP +LS C G I S + +P++ CC KLREQ+PCLCGY++NPSLR YV SP A+ +AS
Sbjct: 1  VTCSPVQLSPCLGPINSGAPSPTT-CCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLAS 60

Query: 74 KCGVPFPSC 83
           CGVP P C
Sbjct: 61 NCGVPVPQC 68

[Close]
BLAST of Cla010775 vs. Swiss-Prot
Match: NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-15
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 

Query: 15 TCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAKSVASK 74
          TCS  +LS C  AI + ++ PS+ CC+KL+EQ+PCLCGY+++P+L+ YV SPGA+  AS 
Sbjct: 2  TCSAVQLSPCLAAI-TKNTPPSAACCNKLKEQKPCLCGYLKDPNLKNYVNSPGARKTASS 61

Query: 75 CGV 78
          CGV
Sbjct: 62 CGV 63

[Close]
BLAST of Cla010775 vs. Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-12
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 6   SGARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQS 65
           +GA       C P++L+ CA AI   +  PS  CC  LR QQ CLC Y+++P+   YV S
Sbjct: 27  AGADAGAGAACEPAQLAVCASAILGGTK-PSGECCGNLRAQQGCLCQYVKDPNYGHYVSS 86

Query: 66  PGAKSVASKCGVPFPSC 83
           P A+   + CG+P P C
Sbjct: 87  PHARDTLNLCGIPVPHC 102

[Close]
BLAST of Cla010775 vs. Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-11
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 

Query: 15 TCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAKSVASK 74
          +C+  +L+ CAGAI +  + P++ CCS LR QQ C C + ++P    YV SP A+   S 
Sbjct: 29 SCNAGQLTVCAGAI-AGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSS 88

Query: 75 CGVPFPSC 83
          CG+  P+C
Sbjct: 89 CGIALPTC 95

[Close]
BLAST of Cla010775 vs. TrEMBL
Match: A0A0B2QIV0_GLYSO (Putative non-specific lipid-transfer protein AKCS9 OS=Glycine soja GN=glysoja_037194 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-24
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 10 VAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAK 69
          +AEAVTCSP ELS C GAI +SSS PS+ CC K+REQ+PCLCGY++NPSLRPYV SPG++
Sbjct: 26 MAEAVTCSPVELSPCLGAI-TSSSPPSTTCCQKVREQRPCLCGYLKNPSLRPYVNSPGSR 85

Query: 70 SVASKCGVPFPSC 83
           VAS CGVPFP+C
Sbjct: 86 RVASSCGVPFPTC 97

[Close]
BLAST of Cla010775 vs. TrEMBL
Match: I1N5L5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G002300 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-24
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 10 VAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAK 69
          +AEAVTCSP ELS C GAI +SSS PS+ CC K+REQ+PCLCGY++NPSLRPYV SPG++
Sbjct: 26 MAEAVTCSPVELSPCLGAI-TSSSPPSTTCCQKVREQRPCLCGYLKNPSLRPYVNSPGSR 85

Query: 70 SVASKCGVPFPSC 83
           VAS CGVPFP+C
Sbjct: 86 RVASSCGVPFPTC 97

[Close]
BLAST of Cla010775 vs. TrEMBL
Match: A0A059BT60_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02788 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 8   ARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPG 67
           ARVAEAVTCS +ELSSC  AI +SS+ PS+ CCSKLREQ+PCLCGYIRNP+LR YV SP 
Sbjct: 30  ARVAEAVTCSATELSSCVSAI-TSSAPPSALCCSKLREQRPCLCGYIRNPNLRQYVTSPN 89

Query: 68  AKSVASKCGVPFPSC 83
           AK VA  CGVP+P+C
Sbjct: 90  AKRVARTCGVPYPTC 103

[Close]
BLAST of Cla010775 vs. TrEMBL
Match: I3SYA6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-23
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 8   ARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPG 67
           A +AEAVTCSP  LS C GAI SSS+ PS+ CC KLREQ+PCLCGY+RNPSL PYV SPG
Sbjct: 31  APIAEAVTCSPVALSPCLGAI-SSSTPPSAACCQKLREQKPCLCGYLRNPSLAPYVNSPG 90

Query: 68  AKSVASKCGVPFPSC 83
           A++VAS CG+P+P C
Sbjct: 91  ARAVASTCGIPYPRC 104

[Close]
BLAST of Cla010775 vs. TrEMBL
Match: A0A151RN87_CAJCA (Non-specific lipid-transfer protein 2 OS=Cajanus cajan GN=KK1_034539 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-23
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 1 

Query: 12 EAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAKSV 71
          E+VTCSP ELS C GAI +SSS PSS CC K+REQ+PCLCGY++NPSLR YV SPGA+ V
Sbjct: 27 ESVTCSPVELSPCLGAI-TSSSPPSSTCCQKVREQRPCLCGYLKNPSLRQYVNSPGARRV 86

Query: 72 ASKCGVPFPSC 83
          AS CGVPFP+C
Sbjct: 87 ASSCGVPFPTC 96

[Close]
BLAST of Cla010775 vs. NCBI nr
Match: gi|659086721|ref|XP_008444081.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 1 

Query: 5  LSGARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQ 64
          L   RVAEAV+C+P ELSSC+GAI +S +NPSS CC+KL++Q+ CLCGYI+NP+L PYV 
Sbjct: 18 LGRVRVAEAVSCNPVELSSCSGAI-TSGTNPSSICCNKLKQQKACLCGYIKNPALGPYVN 77

Query: 65 SPGAKSVASKCGVPFPSC 83
          SPGAK+VASKCGVP PSC
Sbjct: 78 SPGAKNVASKCGVPIPSC 94

[Close]
BLAST of Cla010775 vs. NCBI nr
Match: gi|734371828|gb|KHN19692.1| (Putative non-specific lipid-transfer protein AKCS9 [Glycine soja])

HSP 1 Score: 117.9 bits (294), Expect = 8.6e-24
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 10 VAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPGAK 69
          +AEAVTCSP ELS C GAI +SSS PS+ CC K+REQ+PCLCGY++NPSLRPYV SPG++
Sbjct: 26 MAEAVTCSPVELSPCLGAI-TSSSPPSTTCCQKVREQRPCLCGYLKNPSLRPYVNSPGSR 85

Query: 70 SVASKCGVPFPSC 83
           VAS CGVPFP+C
Sbjct: 86 RVASSCGVPFPTC 97

[Close]
BLAST of Cla010775 vs. NCBI nr
Match: gi|702374176|ref|XP_010062205.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Eucalyptus grandis])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 8   ARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPG 67
           ARVAEAVTCS +ELSSC  AI +SS+ PS+ CCSKLREQ+PCLCGYIRNP+LR YV SP 
Sbjct: 30  ARVAEAVTCSATELSSCVSAI-TSSAPPSALCCSKLREQRPCLCGYIRNPNLRQYVTSPN 89

Query: 68  AKSVASKCGVPFPSC 83
           AK VA  CGVP+P+C
Sbjct: 90  AKRVARTCGVPYPTC 103

[Close]
BLAST of Cla010775 vs. NCBI nr
Match: gi|388514373|gb|AFK45248.1| (unknown [Lotus japonicus])

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 8   ARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLRPYVQSPG 67
           A +AEAVTCSP  LS C GAI SSS+ PS+ CC KLREQ+PCLCGY+RNPSL PYV SPG
Sbjct: 31  APIAEAVTCSPVALSPCLGAI-SSSTPPSAACCQKLREQKPCLCGYLRNPSLAPYVNSPG 90

Query: 68  AKSVASKCGVPFPSC 83
           A++VAS CG+P+P C
Sbjct: 91  ARAVASTCGIPYPRC 104

[Close]
BLAST of Cla010775 vs. NCBI nr
Match: gi|697144902|ref|XP_009626576.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformis])

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-23
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 1  MAVFLSGARVAEAVTCSPSELSSCAGAIWSSSSNPSSFCCSKLREQQPCLCGYIRNPSLR 60
          + +FL   R  EAVTCS  ELS C GAI +SS  PSS CC+KLREQ+PCLCGY++NP+LR
Sbjct: 17 LVLFLGEFRATEAVTCSAVELSPCVGAI-TSSQPPSSACCAKLREQKPCLCGYLKNPNLR 76

Query: 61 PYVQSPGAKSVASKCGVPFPSC 83
          PYV SP AK VA  CGVP PSC
Sbjct: 77 PYVNSPNAKRVARSCGVPTPSC 97

The following BLAST results are available for this feature:
BLAST of Cla010775 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NLTP_VIGUN9.5e-2367.12Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=... [more]
NLTP2_PRUAR4.4e-2062.32Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1[more]
NLTP2_APIGA4.3e-1555.56Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=... [more]
NLTP2_HORVU1.2e-1241.56Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=... [more]
NLTPX_ORYSI4.9e-1141.18Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=... [more]
BLAST of Cla010775 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2QIV0_GLYSO6.0e-2472.60Putative non-specific lipid-transfer protein AKCS9 OS=Glycine soja GN=glysoja_03... [more]
I1N5L5_SOYBN6.0e-2472.60Uncharacterized protein OS=Glycine max GN=GLYMA_19G002300 PE=4 SV=1[more]
A0A059BT60_EUCGR1.3e-2373.33Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02788 PE=4 SV=1[more]
I3SYA6_LOTJA1.7e-2370.67Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A151RN87_CAJCA8.6e-2373.24Non-specific lipid-transfer protein 2 OS=Cajanus cajan GN=KK1_034539 PE=4 SV=1[more]
BLAST of Cla010775 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086721|ref|XP_008444081.1|1.0e-2470.51PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo][more]
gi|734371828|gb|KHN19692.1|8.6e-2472.60Putative non-specific lipid-transfer protein AKCS9 [Glycine soja][more]
gi|702374176|ref|XP_010062205.1|1.9e-2373.33PREDICTED: non-specific lipid-transfer protein 2-like [Eucalyptus grandis][more]
gi|388514373|gb|AFK45248.1|2.5e-2370.67unknown [Lotus japonicus][more]
gi|697144902|ref|XP_009626576.1|7.3e-2365.85PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU51439watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010775Cla010775.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU51439WMU51439transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 11..79
score: 3.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 16..82
score: 6.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 15..82
score: 1.83
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 15..82
score: 1.1
NoneNo IPR availablePANTHERPTHR33214FAMILY NOT NAMEDcoord: 1..82
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010775Watermelon (Charleston Gray)wcgwmB372
Cla010775Watermelon (97103) v2wmwmbB174
Cla010775Wax gourdwgowmB179