Cla010361 (gene) Watermelon (97103) v1

NameCla010361
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 30842124 .. 30842549 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTTGTTTGAAGAGAGCTGTGGTTATGTTCTTGGTTGAGCAATGGCGGATCTGGGTGTTCCTTGTATTAAACCTCATTCTTGTTGCAATTTTCTTCACTTCAAATCCTTCAAGTTACAGTGATAACCAAAGCGAAGAGCCAAGTGCTAAAATAAAGCAGAAGAAGATTAAAAACAGAGAGTGCAATGAGGCTGAAAAAGTAGAAAAAGTAGAGATCAAACAACAACAAGAAATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGAAGAAGAAGTTGGGTTATCAAAAGAGGAATTGAATGAGAGAGTGGAAGCTTTCATTGTAATGTTCAAGAAGCAATTGATTTCAGATGCAAGAAAAAGGGGAAACAGACCCACTCCATTCAGCTATAACAATAAACAATAA

mRNA sequence

ATGGCTGCTTGTTTGAAGAGAGCTGTGGTTATGTTCTTGGTTGAGCAATGGCGGATCTGGGTGTTCCTTGTATTAAACCTCATTCTTGTTGCAATTTTCTTCACTTCAAATCCTTCAAGTTACAGTGATAACCAAAGCGAAGAGCCAAGTGCTAAAATAAAGCAGAAGAAGATTAAAAACAGAGAGTGCAATGAGGCTGAAAAAGTAGAAAAAGTAGAGATCAAACAACAACAAGAAATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGAAGAAGAAGTTGGGTTATCAAAAGAGGAATTGAATGAGAGAGTGGAAGCTTTCATTGTAATGTTCAAGAAGCAATTGATTTCAGATGCAAGAAAAAGGGGAAACAGACCCACTCCATTCAGCTATAACAATAAACAATAA

Coding sequence (CDS)

ATGGCTGCTTGTTTGAAGAGAGCTGTGGTTATGTTCTTGGTTGAGCAATGGCGGATCTGGGTGTTCCTTGTATTAAACCTCATTCTTGTTGCAATTTTCTTCACTTCAAATCCTTCAAGTTACAGTGATAACCAAAGCGAAGAGCCAAGTGCTAAAATAAAGCAGAAGAAGATTAAAAACAGAGAGTGCAATGAGGCTGAAAAAGTAGAAAAAGTAGAGATCAAACAACAACAAGAAATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGAAGAAGAAGTTGGGTTATCAAAAGAGGAATTGAATGAGAGAGTGGAAGCTTTCATTGTAATGTTCAAGAAGCAATTGATTTCAGATGCAAGAAAAAGGGGAAACAGACCCACTCCATTCAGCTATAACAATAAACAATAA

Protein sequence

MAACLKRAVVMFLVEQWRIWVFLVLNLILVAIFFTSNPSSYSDNQSEEPSAKIKQKKIKNRECNEAEKVEKVEIKQQQEIEEEEEEEEEEEDEDEEEEVGLSKEELNERVEAFIVMFKKQLISDARKRGNRPTPFSYNNKQ
BLAST of Cla010361 vs. Swiss-Prot
Match: FB38_ARATH (Putative F-box protein At1g47300 OS=Arabidopsis thaliana GN=At1g47300 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 6.2e-06
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 1

Query: 58  IKNRECNEAEKVEKVEIKQQQEIEEEEEEEEEEEDEDEEEEVGLSKEELNERVEAFIVMF 117
           +++ + N+ + +E  E ++++E EEEEEEEEEEE+E+EEEE    + E  +++E  I  +
Sbjct: 228 VEDLDVNDPKLLESKEEEEEEEEEEEEEEEEEEEEEEEEEEEESKEREKEKKIETVIGGW 287

Query: 118 KKQ 121
            KQ
Sbjct: 288 IKQ 290

BLAST of Cla010361 vs. NCBI nr
Match: gi|659117638|ref|XP_008458709.1| (PREDICTED: ABC transporter F family member 4 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-45
Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 1

Query: 1   MAACLKRAVVMFLVEQWRIWVFLVLNLILVAIFFTSNPSSYSDNQSEEPSAKIKQKKIKN 60
           MA CLK+AVVMFLVEQWRIWVFL LNLILVAIFFTSNP++YS+ Q +E S K KQKK +N
Sbjct: 36  MATCLKKAVVMFLVEQWRIWVFLALNLILVAIFFTSNPANYSETQKQETSGKTKQKKTEN 95

Query: 61  RECNEAEKVE------KVEIKQQQEIEEEEEEEEEEEDEDEEEEVGLSKEELNERVEAFI 120
            E  EA+K E      K E ++ +E  +EE+E EEEE+E+EEEE+GLSKEELNERVEAFI
Sbjct: 96  IELKEAKKEEDKTKQKKTENREFKEARKEEDEIEEEEEEEEEEEIGLSKEELNERVEAFI 155

Query: 121 VMFKKQLISDARKRGNRPTPFSYNN 140
           VMFKKQLISDARK GNR    SYNN
Sbjct: 156 VMFKKQLISDARKGGNR---LSYNN 177

BLAST of Cla010361 vs. NCBI nr
Match: gi|778707154|ref|XP_011655979.1| (PREDICTED: uncharacterized protein LOC105435604 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 3.0e-40
Identity = 100/151 (66.23%), Postives = 118/151 (78.15%), Query Frame = 1

Query: 1   MAACLKR-AVVMFLVEQWRIWVFLVLNLILVAIFFTS---NPSSYSDNQSEEPSAKIKQK 60
           MA CLK+ AVVMFLVEQWRIWVFLVLNLILVAIFFTS   NP++YS+ Q +E S K K K
Sbjct: 36  MATCLKKLAVVMFLVEQWRIWVFLVLNLILVAIFFTSNPANPANYSETQKQETSGKTKLK 95

Query: 61  KIKNRECNEAEKVE------KVEIKQQQEI--EEEEEEEEEEEDEDEEEEVGLSKEELNE 120
           KI+ RE  EA+K E      K+E ++ +E   EE+E +EE+E +E+EEEE+ LSKEELNE
Sbjct: 96  KIEKRELEEAKKEEDKTKQKKIENREIKEAIKEEDEIKEEDEIEEEEEEEIELSKEELNE 155

Query: 121 RVEAFIVMFKKQLISDARKRGNRPTPFSYNN 140
           RVEAFIVMFKKQLISDARK GNR   FSYN+
Sbjct: 156 RVEAFIVMFKKQLISDARKGGNR---FSYNH 183

BLAST of Cla010361 vs. NCBI nr
Match: gi|823167683|ref|XP_012483741.1| (PREDICTED: ABC transporter F family member 4 [Gossypium raimondii])

HSP 1 Score: 129.4 bits (324), Expect = 4.9e-27
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 1

Query: 1   MAACLKRAVVMFLVEQWRIWVFLVLNLILVAIFFTSNPSSYSDNQSEEPSAKIKQKKIKN 60
           +  CLKRA+++FLV+QWR WVFLVLNL+L+AIFFTS   + S    +E +   ++ K K 
Sbjct: 20  LLVCLKRALLLFLVQQWRAWVFLVLNLVLLAIFFTSMTPNSSQISQQEMNKNEEEMKKKR 79

Query: 61  RECNEAE---------------KVEKVE-IKQQQEIEEEEEEEEEEEDEDEEEEVGLSKE 120
              NEAE               K E+VE + +++ + EEEEEEEEEE+E+  E + LSKE
Sbjct: 80  GNFNEAEACTEDHQVSNSKQISKSEEVEDLVEKEVVVEEEEEEEEEEEEENIEALKLSKE 139

Query: 121 ELNERVEAFIVMFKKQLISDARKRGNRPTPFS 137
           ELNERVEAFI MF++QL  DARK G +P   S
Sbjct: 140 ELNERVEAFIAMFRQQLALDARK-GRKPADCS 170

BLAST of Cla010361 vs. NCBI nr
Match: gi|1012260555|ref|XP_015945989.1| (PREDICTED: uncharacterized protein LOC107471059 [Arachis duranensis])

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-21
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 1

Query: 1   MAACLKRAVVMFLVEQWRIWVFLVLNLILVAIFFTSNPSSYSDNQSEEPSAKIKQKKIKN 60
           +  CLKR    FLVEQWR WVFL+LN+IL+AIFF S        Q++E   +I+  K   
Sbjct: 38  LMVCLKR----FLVEQWRAWVFLLLNVILLAIFFMSTKKPRWSVQTQESQNRIQPIKTHL 97

Query: 61  RE------CNEAEKVEKVEIKQQQEIEEEEEEEEEEEDEDEEEEVGLSKEELNERVEAFI 120
           ++        E+++  +  +   ++I+ EE+E EEEE+E+EE    LSKEELNERVEAFI
Sbjct: 98  KKDSVPPRSEESKECSENNVSANKKIDGEEDEGEEEEEEEEEAVAVLSKEELNERVEAFI 157

Query: 121 VMFKKQLISDARKRGNRP 133
            MF++ LISD ++  N P
Sbjct: 158 AMFRQHLISDVKQGFNFP 171

BLAST of Cla010361 vs. NCBI nr
Match: gi|645249927|ref|XP_008230968.1| (PREDICTED: uncharacterized protein LOC103330199 [Prunus mume])

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-21
Identity = 70/142 (49.30%), Postives = 94/142 (66.20%), Query Frame = 1

Query: 1   MAACLKRAVVM-FLVEQWRIWVFLVLNLILVAIFFT--SNPSSYSDNQ---SEEPSAKIK 60
           + ACL+RA++M FL+EQWR WVFLVLNLIL+AI FT  S+ S++  NQ   S   +A++ 
Sbjct: 31  LMACLQRAILMVFLMEQWRAWVFLVLNLILLAILFTPISSTSNFDQNQQCSSNNSNAEVV 90

Query: 61  ---QKKIKNRECNEAEKVEKVEIKQQQEIEEE-------EEEEEEEEDEDEEEEVGLSKE 120
              ++K K REC      E+  +++ +E +EE         E EEE  ED+ EEV  SKE
Sbjct: 91  ENIERKNKRRECYRCPSSEQA-VEEVKECDEEICKKRSTSVENEEEGFEDQTEEV--SKE 150

Query: 121 ELNERVEAFIVMFKKQLISDAR 127
            LNERVEAFIVMF++ L+SDAR
Sbjct: 151 ALNERVEAFIVMFRQHLVSDAR 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FB38_ARATH6.2e-0639.68Putative F-box protein At1g47300 OS=Arabidopsis thaliana GN=At1g47300 PE=3 SV=2[more]
Match NameE-valueIdentityDescription
gi|659117638|ref|XP_008458709.1|1.8e-4569.66PREDICTED: ABC transporter F family member 4 [Cucumis melo][more]
gi|778707154|ref|XP_011655979.1|3.0e-4066.23PREDICTED: uncharacterized protein LOC105435604 [Cucumis sativus][more]
gi|823167683|ref|XP_012483741.1|4.9e-2749.34PREDICTED: ABC transporter F family member 4 [Gossypium raimondii][more]
gi|1012260555|ref|XP_015945989.1|5.2e-2144.93PREDICTED: uncharacterized protein LOC107471059 [Arachis duranensis][more]
gi|645249927|ref|XP_008230968.1|5.2e-2149.30PREDICTED: uncharacterized protein LOC103330199 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU55441watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010361Cla010361.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU55441WMU55441transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 66..100
scor

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010361Watermelon (97103) v2wmwmbB007
Cla010361Watermelon (97103) v2wmwmbB012
Cla010361Watermelon (97103) v2wmwmbB042
Cla010361Wax gourdwgowmB000
Cla010361Wax gourdwgowmB467
Cla010361Watermelon (97103) v1wmwmB009
Cla010361Watermelon (97103) v1wmwmB024
Cla010361Cucumber (Gy14) v1cgywmB123
Cla010361Cucumber (Gy14) v1cgywmB607
Cla010361Cucurbita maxima (Rimu)cmawmB078
Cla010361Cucurbita maxima (Rimu)cmawmB184
Cla010361Cucurbita maxima (Rimu)cmawmB219
Cla010361Cucurbita maxima (Rimu)cmawmB362
Cla010361Cucurbita moschata (Rifu)cmowmB069
Cla010361Cucurbita moschata (Rifu)cmowmB172
Cla010361Cucurbita moschata (Rifu)cmowmB206
Cla010361Cucurbita moschata (Rifu)cmowmB243
Cla010361Cucurbita moschata (Rifu)cmowmB646
Cla010361Wild cucumber (PI 183967)cpiwmB000
Cla010361Wild cucumber (PI 183967)cpiwmB185
Cla010361Melon (DHL92) v3.5.1mewmB143
Cla010361Melon (DHL92) v3.5.1mewmB343
Cla010361Watermelon (Charleston Gray)wcgwmB048
Cla010361Watermelon (Charleston Gray)wcgwmB116
Cla010361Cucumber (Chinese Long) v2cuwmB000
Cla010361Cucumber (Chinese Long) v2cuwmB183
Cla010361Cucurbita pepo (Zucchini)cpewmB381
Cla010361Cucurbita pepo (Zucchini)cpewmB502
Cla010361Bottle gourd (USVL1VR-Ls)lsiwmB170
Cla010361Bottle gourd (USVL1VR-Ls)lsiwmB173
Cla010361Bottle gourd (USVL1VR-Ls)lsiwmB236
Cla010361Cucumber (Gy14) v2cgybwmB001
Cla010361Cucumber (Gy14) v2cgybwmB172
Cla010361Cucumber (Gy14) v2cgybwmB340
Cla010361Melon (DHL92) v3.6.1medwmB140
Cla010361Melon (DHL92) v3.6.1medwmB341
Cla010361Silver-seed gourdcarwmB1002
Cla010361Cucumber (Chinese Long) v3cucwmB000
Cla010361Cucumber (Chinese Long) v3cucwmB195