Cla009989 (gene) Watermelon (97103) v1

Overview
NameCla009989
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat-containing protein (AHRD V1 ***- D7L220_ARALL); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr5 : 32974648 .. 32975091 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGCAAGCGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATCGTGCGCAAGAACAGAAGGCTATGAAACTACTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTTAAATCCTGTTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAAGTTATTGGATGAGATGATAAATAAACATCATCTGAGCCTTGATATATCAACCTATTCCCTTCTAATTCATGGTCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATATAAAGCCGAGATACCTCACATGTCAACTGCTTTTGGATGAAGTTAAGCAGAAGAATATGGGTGAAGTTGCTGATAGGATTGAAGATATCATGAAGAACTTGTGA

mRNA sequence

ATGCCAAGCAAGCGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATCGTGCGCAAGAACAGAAGGCTATGAAACTACTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTTAAATCCTGTTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAAGTTATTGGATGAGATGATAAATAAACATCATCTGAGCCTTGATATATCAACCTATTCCCTTCTAATTCATGGTCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATATAAAGCCGAGATACCTCACATGTCAACTGCTTTTGGATGAAGTTAAGCAGAAGAATATGGGTGAAGTTGCTGATAGGATTGAAGATATCATGAAGAACTTGTGA

Coding sequence (CDS)

ATGCCAAGCAAGCGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATCGTGCGCAAGAACAGAAGGCTATGAAACTACTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTTAAATCCTGTTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAAGTTATTGGATGAGATGATAAATAAACATCATCTGAGCCTTGATATATCAACCTATTCCCTTCTAATTCATGGTCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATATAAAGCCGAGATACCTCACATGTCAACTGCTTTTGGATGAAGTTAAGCAGAAGAATATGGGTGAAGTTGCTGATAGGATTGAAGATATCATGAAGAACTTGTGA

Protein sequence

MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDEVKQKNMGEVADRIEDIMKNL
Homology
[Close]
BLAST of Cla009989 vs. Swiss-Prot
Match: PP211_ARATH (Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-48
Identity = 97/147 (65.99%), Postives = 110/147 (74.83%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V  NTSTYNSMI+MYCH  +E KA++LL+EME S LC PDV TY PLL+SCF+ G
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 415

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
               V  KLL EM+ KHHLSLD STY+ LI  LCRAN CEWAY LFE+MISQDI PR+ T
Sbjct: 416 DVVEV-GKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRT 475

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C LLL+EVK+KNM E A+RIE IMK +
Sbjct: 476 CLLLLEEVKKKNMHESAERIEHIMKTV 501

[Close]
BLAST of Cla009989 vs. Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEME--KSGLCKPDVQTYYPLLKSCFR 60
           M ++ V  +   YN+MIS   H ++++ A++LL+ ME  +   C P+V+TY PLLK C  
Sbjct: 404 MTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCH 463

Query: 61  TGKTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRY 120
             K   +L  LL  M+ K+ +S+D+STY LLI GLC + K E A   FE+ + + + PR 
Sbjct: 464 KKKMK-LLGILLHHMV-KNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRD 523

Query: 121 LTCQLLLDEVKQKNMGEVADRIEDIMKN 147
            TC++L+DE+++KNM E   +I+ ++++
Sbjct: 524 STCKMLVDELEKKNMAEAKLKIQSLVQS 549


HSP 2 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 38/134 (28.36%), Postives = 64/134 (47.76%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           P+  TY S +  YC     ++  ++LEEM ++G C P+V TY  ++ S    GK+  V  
Sbjct: 306 PDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENG-CNPNVVTYTIVMHS---LGKSKQVAE 365

Query: 68  KL-LDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLD 127
            L + E + +     D   YS LIH L +  + + A ++FE M +Q ++   L    ++ 
Sbjct: 366 ALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMIS 425

Query: 128 EVKQKNMGEVADRI 141
                +  E+A R+
Sbjct: 426 AALHHSRDEMALRL 435


HSP 3 Score: 39.7 bits (91), Expect = 3.3e-02
Identity = 33/144 (22.92%), Postives = 60/144 (41.67%), Query Frame = 1 

Query: 7   LPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDY-- 66
           L    T + ++       +  KA+    EMEKS   K D      L+ +  +    ++  
Sbjct: 200 LVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAH 259

Query: 67  -VLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQL 126
            V  KL D       +  D  T+++LIHG C+A K + A  + + M   +  P  +T   
Sbjct: 260 EVFLKLFDT------IKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTS 319

Query: 127 LLDE-VKQKNMGEVADRIEDIMKN 147
            ++   K+ +   V + +E++ +N
Sbjct: 320 FVEAYCKEGDFRRVNEMLEEMREN 337

[Close]
BLAST of Cla009989 vs. Swiss-Prot
Match: PP218_ARATH (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 51/144 (35.42%), Postives = 76/144 (52.78%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           M   R+ P+  TYN++I+ YC   +   A +LL  MEK   CKP+V+T+  L++   R G
Sbjct: 362 MVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA-CKPNVRTFNELMEGLCRVG 421

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           K  Y    LL  M++ + LS DI +Y++LI GLCR      AY+L   M   DI+P  LT
Sbjct: 422 KP-YKAVHLLKRMLD-NGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLT 481

Query: 121 CQLLLDEVKQKNMGEVADRIEDIM 145
              +++   ++   +VA     +M
Sbjct: 482 FTAIINAFCKQGKADVASAFLGLM 502


HSP 2 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           PN+ +Y+ +I   C   + ++A  L ++M + G C+P  +TY  L+K+    G  D   +
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG-CQPSTRTYTVLIKALCDRGLIDKAFN 323

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLD 127
            L DEMI +     ++ TY++LI GLCR  K E A  +  KM+   I P  +T   L++
Sbjct: 324 -LFDEMIPRG-CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379


HSP 3 Score: 48.1 bits (113), Expect = 9.4e-05
Identity = 28/112 (25.00%), Postives = 50/112 (44.64%), Query Frame = 1 

Query: 15  SMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDEMI 74
           S++  +C     + A+K+ + M K   C P+  +Y  L+      G+ +      L + +
Sbjct: 235 SLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFG--LKDQM 294

Query: 75  NKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLD 127
            +        TY++LI  LC     + A+ LF++MI +  KP   T  +L+D
Sbjct: 295 GEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLID 344


HSP 4 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 35/119 (29.41%), Postives = 54/119 (45.38%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           P+  +YN +I   C       A KLL  M    + +PD  T+  ++ +  + GK D V S
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDI-EPDCLTFTAIINAFCKQGKAD-VAS 498

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLD 127
             L  M+ K  +SLD  T + LI G+C+  K   A  + E ++   I     +  ++LD
Sbjct: 499 AFLGLMLRKG-ISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILD 554


HSP 5 Score: 39.3 bits (90), Expect = 4.4e-02
Identity = 28/92 (30.43%), Postives = 44/92 (47.83%), Query Frame = 1 

Query: 7   LPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVL 66
           LPN   Y  +I+  C   + ++A KLL  M+ SG+  P+  TY  ++K     GK D  L
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV-SPNHVTYTVMVKGYVNNGKLDRAL 672

Query: 67  SKLLDEMINKHHLSLDISTYSLLIHGLCRANK 99
            + +  M+ + +  L+   YS L+ G   + K
Sbjct: 673 -ETVRAMVERGY-ELNDRIYSSLLQGFVLSQK 701


HSP 6 Score: 37.7 bits (86), Expect = 1.3e-01
Identity = 30/132 (22.73%), Postives = 56/132 (42.42%), Query Frame = 1 

Query: 13  YNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDE 72
           Y ++++  C     + A   + ++ K G           LL  C      D +  K+ D 
Sbjct: 198 YRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDAL--KVFDV 257

Query: 73  MINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDEVKQKN 132
           M  +   + +  +YS+LIHGLC   + E A+ L ++M  +  +P   T  +L+  +  + 
Sbjct: 258 MSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 317

Query: 133 MGEVADRIEDIM 145
           + + A  + D M
Sbjct: 318 LIDKAFNLFDEM 327

[Close]
BLAST of Cla009989 vs. Swiss-Prot
Match: RF1_ORYSI (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-14
Identity = 42/126 (33.33%), Postives = 74/126 (58.73%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           M S  + PNT TY+++I+ YC  ++ + A+ L +EME SG+  PD+ TY  +L+  F+T 
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV-SPDIITYNIILQGLFQTR 596

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           +T    +K L   I +    +++STY++++HGLC+    + A Q+F+ +   D+K    T
Sbjct: 597 RT--AAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEART 656

Query: 121 CQLLLD 127
             +++D
Sbjct: 657 FNIMID 659


HSP 2 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           M  + +LP+  TYNS+I+  C      KAM++L  M K+G+  PD  TY  +L     +G
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVM-PDCMTYNSILHGYCSSG 281

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           +    +  L  + +    +  D+ TYSLL+  LC+  +C  A ++F+ M  + +KP   T
Sbjct: 282 QPKEAIGFL--KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 341

Query: 121 CQLLL 126
              LL
Sbjct: 342 YGTLL 343


HSP 3 Score: 62.8 bits (151), Expect = 3.7e-09
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           M  + +  NT  +NS+I  +C   +  ++ KL E M + G+ KP+V TY  L+      G
Sbjct: 467 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGV-KPNVITYNTLINGYCLAG 526

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           K D  + KLL  M++   L  +  TYS LI+G C+ ++ E A  LF++M S  + P  +T
Sbjct: 527 KMDEAM-KLLSGMVSVG-LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 586

Query: 121 CQLLLDEVKQ 131
             ++L  + Q
Sbjct: 587 YNIILQGLFQ 593


HSP 4 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 36/137 (26.28%), Postives = 66/137 (48.18%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           P+  +Y ++I+ +       KA     EM   G+  PDV TY  ++ +  +    D  + 
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGIL-PDVVTYNSIIAALCKAQAMDKAM- 253

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDE 127
           ++L+ M+ K+ +  D  TY+ ++HG C + + + A    +KM S  ++P  +T  LL+D 
Sbjct: 254 EVLNTMV-KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 313

Query: 128 VKQKNMGEVADRIEDIM 145
           + +      A +I D M
Sbjct: 314 LCKNGRCMEARKIFDSM 327


HSP 5 Score: 45.4 bits (106), Expect = 6.1e-04
Identity = 28/110 (25.45%), Postives = 56/110 (50.91%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVL- 67
           P+   ++ +I  Y  + +  +AM +  +M + GL  P+  TY  ++    ++G+ +  + 
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL-NPNAVTYGAVIGILCKSGRVEDAML 428

Query: 68  --SKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDI 115
              +++DE ++  ++      Y+ LIHGLC  NK E A +L  +M+ + I
Sbjct: 429 YFEQMIDEGLSPGNI-----VYNSLIHGLCTCNKWERAEELILEMLDRGI 472

[Close]
BLAST of Cla009989 vs. Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-13
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           + SK +LP+  T+NS+I   C     + AM+L EEM   G C+PD  TY  L+ S    G
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG-CEPDEFTYNMLIDSLCSKG 450

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           K D  L+ L  + +     +  + TY+ LI G C+ANK   A ++F++M    +    +T
Sbjct: 451 KLDEALNML--KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 510

Query: 121 CQLLLDEVKQKNMGEVADRIEDIM 145
              L+D + +    E A ++ D M
Sbjct: 511 YNTLIDGLCKSRRVEDAAQLMDQM 531


HSP 2 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           M SK   P+  TYN +I   C + +  +A+ +L++ME SG C   V TY  L+    +  
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG-CARSVITYNTLIDGFCKAN 485

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKP-RYL 120
           KT     ++ DEM   H +S +  TY+ LI GLC++ + E A QL ++MI +  KP +Y 
Sbjct: 486 KTREA-EEIFDEM-EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 545

Query: 121 TCQLLLDEVKQKNMGEVADRIEDIMKN 147
              LL    +  ++ + AD ++ +  N
Sbjct: 546 YNSLLTHFCRGGDIKKAADIVQAMTSN 569


HSP 3 Score: 59.3 bits (142), Expect = 4.1e-08
Identity = 35/124 (28.23%), Postives = 62/124 (50.00%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           P+  TYNS+IS  C   + ++A+++L++M     C P+  TY  L+ +  +  + +    
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATE 387

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDE 127
             L  ++    +  D+ T++ LI GLC       A +LFE+M S+  +P   T  +L+D 
Sbjct: 388 --LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS 447

Query: 128 VKQK 132
           +  K
Sbjct: 448 LCSK 448


HSP 4 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           PNT TYN++IS  C   Q ++A +L   +   G+  PDV T+  L++    T +   V  
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGIL-PDVCTFNSLIQGLCLT-RNHRVAM 422

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDE 127
           +L +EM +K     D  TY++LI  LC   K + A  + ++M         +T   L+D 
Sbjct: 423 ELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 482

Query: 128 VKQKNMGEVADRIEDIMK 146
             + N    A+ I D M+
Sbjct: 483 FCKANKTREAEEIFDEME 497


HSP 5 Score: 55.8 bits (133), Expect = 4.5e-07
Identity = 29/131 (22.14%), Postives = 66/131 (50.38%), Query Frame = 1 

Query: 14  NSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDEM 73
           N ++  +C   + + A+  ++EM       PD  T+  L+    + G   + + +++D M
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAI-EIMDVM 322

Query: 74  INKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDEVKQKNM 133
           + + +   D+ TY+ +I GLC+  + + A ++ ++MI++D  P  +T   L+  + ++N 
Sbjct: 323 LQEGY-DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 382

Query: 134 GEVADRIEDIM 145
            E A  +  ++
Sbjct: 383 VEEATELARVL 391

[Close]
BLAST of Cla009989 vs. TrEMBL
Match: A0A0A0KQ08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590150 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.9e-69
Identity = 131/147 (89.12%), Postives = 136/147 (92.52%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MPSK VLPNTSTYNSMI+MYC RA+E+KAMKLLEEM+KS  CKPDVQTYYPLLKSCFRTG
Sbjct: 373 MPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTG 432

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           KTDY LS LLDEMINKHHLSLDISTYSLLIHGLCRANKC+WAYQLFEKMISQDIKPRYLT
Sbjct: 433 KTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLT 492

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           CQLLLDE KQKNM  VADRIE IMK L
Sbjct: 493 CQLLLDEFKQKNMDGVADRIEGIMKKL 519

[Close]
BLAST of Cla009989 vs. TrEMBL
Match: A0A0A0KQ08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590150 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-04
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           P   +Y+++I  YCHR    K  +LL+EM+  G C  +V TY  ++  C  T   ++  +
Sbjct: 274 PCVISYSTIILFYCHRCNFNKVYELLDEMDAQG-CPANVITYTTIM--CSLTKSEEFEEA 333

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFE-KMISQDIKPRYLT 121
             + E +       D   Y+ LIH L RA K   A  +FE +M S+ + P   T
Sbjct: 334 LQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTST 384


HSP 2 Score: 221.5 bits (563), Expect = 6.9e-55
Identity = 101/147 (68.71%), Postives = 126/147 (85.71%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V PNTSTY+SMISM C+ AQE++A ++L+EME SG CKPD+QTY+PL+KSCFRTG
Sbjct: 231 MPKAGVAPNTSTYSSMISMLCYHAQEKRAFEILKEMENSGNCKPDLQTYHPLIKSCFRTG 290

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
             D +L+ +L++MINKHHLSLD+STY+LLIHGLCRA++C WA+ LFE+MI QDI PRY T
Sbjct: 291 NIDSLLNDILNDMINKHHLSLDLSTYTLLIHGLCRADRCNWAFSLFEEMIDQDIIPRYRT 350

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C LLLDEVKQKNM + A++IED+MKNL
Sbjct: 351 CHLLLDEVKQKNMYQAAEKIEDLMKNL 377

[Close]
BLAST of Cla009989 vs. TrEMBL
Match: K7MFE1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G058400 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V PNTSTYNSMISM+C+ AQE++A+++L+EME SG CKPD QTY+PL+KSCFR+G
Sbjct: 325 MPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSG 384

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           K D VLS++L++MINK HLSLD+STY+LLIHGLCR ++C WA+ LFE+MI QDI PRY T
Sbjct: 385 KIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRT 444

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C+LLLDEVKQKNM + A++IED+MK L
Sbjct: 445 CRLLLDEVKQKNMYQAAEKIEDLMKKL 471

[Close]
BLAST of Cla009989 vs. TrEMBL
Match: A0A0B2PSV2_GLYSO (Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_027426 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V PNTSTYNSMISM+C+ AQE++A+++L+EME SG CKPD QTY+PL+KSCFR+G
Sbjct: 351 MPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSG 410

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           K D VLS++L++MINK HLSLD+STY+LLIHGLCR ++C WA+ LFE+MI QDI PRY T
Sbjct: 411 KIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRT 470

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C+LLLDEVKQKNM + A++IED+MK L
Sbjct: 471 CRLLLDEVKQKNMYQAAEKIEDLMKKL 497

[Close]
BLAST of Cla009989 vs. TrEMBL
Match: A0A0R0FWF4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G058400 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V PNTSTYNSMISM+C+ AQE++A+++L+EME SG CKPD QTY+PL+KSCFR+G
Sbjct: 325 MPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSG 384

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           K D VLS++L++MINK HLSLD+STY+LLIHGLCR ++C WA+ LFE+MI QDI PRY T
Sbjct: 385 KIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRT 444

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C+LLLDEVKQKNM + A++IED+MK L
Sbjct: 445 CRLLLDEVKQKNMYQAAEKIEDLMKKL 471

[Close]
BLAST of Cla009989 vs. NCBI nr
Match: gi|659090566|ref|XP_008446085.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 8.3e-70
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MPSK VLPNTSTYNSMISMYC RA+E+KA KLLEEMEKSG CKPDVQTYYPLLKSCFR G
Sbjct: 371 MPSKSVLPNTSTYNSMISMYCRRAREEKARKLLEEMEKSGYCKPDVQTYYPLLKSCFRNG 430

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           KTDY LS LLDEM NKHHLSLDISTYSLLIHGLCRANKC+WAYQLFEKMISQDIKPRYLT
Sbjct: 431 KTDYDLSNLLDEMTNKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLT 490

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           CQLLLDEVKQKNM +VADRIE IMK L
Sbjct: 491 CQLLLDEVKQKNMDKVADRIEGIMKKL 517

[Close]
BLAST of Cla009989 vs. NCBI nr
Match: gi|778704731|ref|XP_011655585.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 7.0e-69
Identity = 131/147 (89.12%), Postives = 136/147 (92.52%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MPSK VLPNTSTYNSMI+MYC RA+E+KAMKLLEEM+KS  CKPDVQTYYPLLKSCFRTG
Sbjct: 373 MPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTG 432

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           KTDY LS LLDEMINKHHLSLDISTYSLLIHGLCRANKC+WAYQLFEKMISQDIKPRYLT
Sbjct: 433 KTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLT 492

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           CQLLLDE KQKNM  VADRIE IMK L
Sbjct: 493 CQLLLDEFKQKNMDGVADRIEGIMKKL 519

[Close]
BLAST of Cla009989 vs. NCBI nr
Match: gi|778704731|ref|XP_011655585.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Cucumis sativus])

HSP 1 Score: 52.4 bits (124), Expect = 7.9e-04
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 1 

Query: 8   PNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLS 67
           P   +Y+++I  YCHR    K  +LL+EM+  G C  +V TY  ++  C  T   ++  +
Sbjct: 274 PCVISYSTIILFYCHRCNFNKVYELLDEMDAQG-CPANVITYTTIM--CSLTKSEEFEEA 333

Query: 68  KLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFE-KMISQDIKPRYLT 121
             + E +       D   Y+ LIH L RA K   A  +FE +M S+ + P   T
Sbjct: 334 LQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTST 384


HSP 2 Score: 229.9 bits (585), Expect = 2.8e-57
Identity = 107/147 (72.79%), Postives = 126/147 (85.71%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP K V PNTSTYN+MI+M+CH A+EQKA+ +L +ME + LCKPDVQTYYPLLK CF+TG
Sbjct: 360 MPKKGVPPNTSTYNTMIAMFCHHAEEQKALDVLLQMENARLCKPDVQTYYPLLKMCFKTG 419

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           KTD  LSKLLD+M+N+HHLSLD+STY+LLIHGLCR+NKCEWAY LFE+MI Q+IKPRY T
Sbjct: 420 KTDNFLSKLLDDMVNRHHLSLDLSTYTLLIHGLCRSNKCEWAYLLFEEMIGQEIKPRYKT 479

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C+LL DEVK+KNM   AD IED MK L
Sbjct: 480 CRLLWDEVKRKNMFGPADTIEDFMKKL 506

[Close]
BLAST of Cla009989 vs. NCBI nr
Match: gi|764578548|ref|XP_011463463.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 221.9 bits (564), Expect = 7.6e-55
Identity = 101/147 (68.71%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V  NTSTYN++I+M+C+ AQE++A+K+L++ME+SGLCKPDVQTYYPLLK CF+TG
Sbjct: 353 MPENEVPHNTSTYNTLIAMFCNHAQEEEALKILQKMERSGLCKPDVQTYYPLLKMCFKTG 412

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
           KTD  L+KL++ M+N HHLS D+STY+LLIHGLCRA KCEWAY LFE+MI+QD+KPRY T
Sbjct: 413 KTDNXLNKLVNGMVNGHHLSFDLSTYTLLIHGLCRAGKCEWAYSLFEEMIAQDMKPRYRT 472

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C+LL DEVK KNM   AD IED MK L
Sbjct: 473 CRLLWDEVKLKNMSAAADSIEDFMKKL 499

[Close]
BLAST of Cla009989 vs. NCBI nr
Match: gi|1012329428|gb|KYP41009.1| (hypothetical protein KK1_037612 [Cajanus cajan])

HSP 1 Score: 221.5 bits (563), Expect = 9.9e-55
Identity = 101/147 (68.71%), Postives = 126/147 (85.71%), Query Frame = 1 

Query: 1   MPSKRVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTG 60
           MP   V PNTSTY+SMISM C+ AQE++A ++L+EME SG CKPD+QTY+PL+KSCFRTG
Sbjct: 231 MPKAGVAPNTSTYSSMISMLCYHAQEKRAFEILKEMENSGNCKPDLQTYHPLIKSCFRTG 290

Query: 61  KTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLT 120
             D +L+ +L++MINKHHLSLD+STY+LLIHGLCRA++C WA+ LFE+MI QDI PRY T
Sbjct: 291 NIDSLLNDILNDMINKHHLSLDLSTYTLLIHGLCRADRCNWAFSLFEEMIDQDIIPRYRT 350

Query: 121 CQLLLDEVKQKNMGEVADRIEDIMKNL 148
           C LLLDEVKQKNM + A++IED+MKNL
Sbjct: 351 CHLLLDEVKQKNMYQAAEKIEDLMKNL 377

The following BLAST results are available for this feature:
BLAST of Cla009989 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP211_ARATH3.1e-4865.99Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidop... [more]
PP248_ARATH1.4e-2138.51Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidop... [more]
PP218_ARATH1.7e-1435.42Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidop... [more]
RF1_ORYSI6.5e-1433.33Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1[more]
PP281_ARATH5.5e-1332.64Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
BLAST of Cla009989 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ08_CUCSA4.9e-6989.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590150 PE=4 SV=1[more]
A0A0A0KQ08_CUCSA5.5e-0431.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590150 PE=4 SV=1[more]
K7MFE1_SOYBN1.2e-5468.71Uncharacterized protein OS=Glycine max GN=GLYMA_16G058400 PE=4 SV=1[more]
A0A0B2PSV2_GLYSO1.2e-5468.71Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=gl... [more]
A0A0R0FWF4_SOYBN1.2e-5468.71Uncharacterized protein OS=Glycine max GN=GLYMA_16G058400 PE=4 SV=1[more]
BLAST of Cla009989 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090566|ref|XP_008446085.1|8.3e-7089.80PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial ... [more]
gi|778704731|ref|XP_011655585.1|7.0e-6989.12PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial ... [more]
gi|778704731|ref|XP_011655585.1|7.9e-0431.58PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial ... [more]
gi|764578548|ref|XP_011463463.1|7.6e-5568.71PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g... [more]
gi|1012329428|gb|KYP41009.1|9.9e-5568.71hypothetical protein KK1_037612 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009989Cla009989.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 79..109
score: 4.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..56
score: 1.1
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 85..116
score: 2.1E-8coord: 12..45
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 45..80
score: 7.443coord: 9..43
score: 11.915coord: 82..116
score: 12
NoneNo IPR availableunknownCoilCoilcoord: 137..147
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..147
score: 8.3
NoneNo IPR availablePANTHERPTHR24015:SF347SUBFAMILY NOT NAMEDcoord: 1..147
score: 8.3