Cla009198 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009198
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 4392941 .. 4394069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCGTCAAGCTCACGGACTTTGAACCTCTTATGGAAGCAACCTCCTTATTGGCTCAAATTTCGAAGGATGCCGACGTGAAATTTACGCCGTTGAAGCTCTACATAATTGTCTCGAACCGTTCCCCTCGCTTCTTTGCAACGCTCCAATTGTCGGATCGATTCTTCACCAACTTTTCCGTCAATCATGATCACAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATCTTTTGGATAAAACAAAACAATTGATCCTTAGATTTGAGACTTCAAGTTAGTATATTTCTACCATTTTTCTTCTCTTGAGAATAATCAATCTTTTGCTTCTAATTAATTACATGAATTCTTGTCATTTCTTGAACAACATCTTAGATTATTGTGGGAGATTTTTCCTTCAAGGTCTTAGCTTAAATCTTTTTTTTTTTGTTTTTCTCTCTCTTACTTTGGGGTCTAATTCTTATCTGATTTCTCTTTACTATTCAAATTTCTTGTAGATTTGAGACTTCAAGTTAGTATATTTCCACCATTTTTCTTCTCTTGAGAGTAATCAATCTTTTGGTTCTATTTACATGAATTCTTGTGATCATTTCTTGAACAACATTATTTTAGATTAATATTTTTGATGTATTGTGAGAAATCTTTGTTACTTTTTGGTTTCAAGAACATAGTTACATAAAAATCTTGATTGTTTTTGTAGGAGATTTTTCCTTCAAGTTCTTAATCTGATTTCTCTTTTAGGTCAAATATTCCCACCTTTGCATTATGAATTGACATTGTCACCTCCCCAATTAGCAGAGAATAATAATATAGGGGGCCAACTTGAAGAAGGAAAATTTTTCATAGTTAAATCTAAGGAATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATGATTCAGGTAATGATACTATTTTTTTCATATTTATTTGGAAGAAAGTGATTAAATTATGTTTTTTTTTTTTTAACAGTTTGTTTATGTGTCACAGTCGTTCGTATTGGTGTAACCAATTCTCGAATCAAGTTCTCCATTGCATCTAAGGAGATTACGCTTACTAAAGAGGTATTCTTCTTTTGCTAA

mRNA sequence

ATGTTCTTCGTCAAGCTCACGGACTTTGAACCTCTTATGGAAGCAACCTCCTTATTGGCTCAAATTTCGAAGGATGCCGACGTGAAATTTACGCCGTTGAAGCTCTACATAATTGTCTCGAACCGTTCCCCTCGCTTCTTTGCAACGCTCCAATTGTCGGATCGATTCTTCACCAACTTTTCCGTCAATCATGATCACAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATCTTTTGGATAAAACAAAACAATTGATCCTTAGATTTGAGACTTCAACAGAGAATAATAATATAGGGGGCCAACTTGAAGAAGGAAAATTTTTCATAGTTAAATCTAAGGAATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATGATTCAGTCGTTCGTATTGGTGTAACCAATTCTCGAATCAAGTTCTCCATTGCATCTAAGGAGATTACGCTTACTAAAGAGGTATTCTTCTTTTGCTAA

Coding sequence (CDS)

ATGTTCTTCGTCAAGCTCACGGACTTTGAACCTCTTATGGAAGCAACCTCCTTATTGGCTCAAATTTCGAAGGATGCCGACGTGAAATTTACGCCGTTGAAGCTCTACATAATTGTCTCGAACCGTTCCCCTCGCTTCTTTGCAACGCTCCAATTGTCGGATCGATTCTTCACCAACTTTTCCGTCAATCATGATCACAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTTGTTCAATGACTATCCATCTTTTGGATAAAACAAAACAATTGATCCTTAGATTTGAGACTTCAACAGAGAATAATAATATAGGGGGCCAACTTGAAGAAGGAAAATTTTTCATAGTTAAATCTAAGGAATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATGATTCAGTCGTTCGTATTGGTGTAACCAATTCTCGAATCAAGTTCTCCATTGCATCTAAGGAGATTACGCTTACTAAAGAGGTATTCTTCTTTTGCTAA

Protein sequence

MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNFSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFETSTENNNIGGQLEEGKFFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTKEVFFFC

Homology

[Close]

BLAST of Cla009198 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.7e-49
Identity = 109/162 (67.28%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQIS-KDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTN 60
           MF VKLT+F+PL++ATS  AQIS  DADVKFTP K +II S+RSPRF ATLQLS ++FT+
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFET-------------- 120
           FSV+HDHSSKVSLESFHDA+LDGGSF SMTIHLLDKT Q+ILRF+T              
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 ---STENNNIG-GQLEEGKFFIVKSKELRRIIKELPIFQDDS 144
                E+N IG  +L+EGK+FIVKSK LRRIIKELPIFQ+DS
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 162

[Close]

BLAST of Cla009198 vs. TrEMBL
Match: A0A0A0K9W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTN 60
           MF VKLT+FEPL+++T  LA  S + A VKFTP KL++IVSNR P F ATLQLS R+FTN
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  FSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFET 106
           FSV+H HSSKVSLESFHDA+LDGG F +M+IHLLDKT Q+ILRF+T
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDT 106

[Close]

BLAST of Cla009198 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 41/117 (35.04%), Postives = 70/117 (59.83%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQ-ISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTN 60
           MF +K+ + +P ++ATSL  + I+ +  +KF+P    +I   + P FFA L +    F  
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  FSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFETSTENNNIGGQL 117
           +SV+ +H S++SL  F +ALL+G S+ SM+IHL +    ++ +FE S    + G Q+
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQI 117

[Close]

BLAST of Cla009198 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNF 60
           M   ++     L+  T +L+ + ++ D++ +PLKL +++ N SP F A LQ++  FF  +
Sbjct: 3   MLKFRVNPLSGLLNPTPVLSHLGEEVDIRVSPLKLSLMLPNFSPSFIAGLQMTHEFFNLY 62

Query: 61  SVNHDHSSKVSLESFHDAL----LDGGSFCSMTIHLLDKTKQLILRFETSTENN------ 120
             +  +  + SL  F+  +    L G S    T+ +    K+L+  + T   NN      
Sbjct: 63  ISDRTYQFRFSLRKFYTFMYRMELQGFSSMLFTVDM----KRLLSVYLTFENNNAKRERR 122

Query: 121 ---------NIGGQLEEGKFFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASK 169
                    ++ G +E   F  + S++ RRI  EL    +   V +  TNSR+ F   +K
Sbjct: 123 RLKLLAYDLDLDGDIEYTTFVSIDSRDFRRIASEL----NSRSVSVTFTNSRVNFFNKNK 181

[Close]

BLAST of Cla009198 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 121/186 (65.05%), Postives = 146/186 (78.49%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTN 60
           MF VKL +F+PL++ATS LAQIS D AD+KFTP K +II S+RSPRF ATLQLS ++FT 
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFET-------------- 120
           FSV++DHSSKVSLESFHDA+LDGGSF SMTIHLLDKT Q+ILRF+T              
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 ---STENNNIG-GQLEEGKFFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASK 168
                E+N IG  +L+E K+FIVKSK LRRIIK+LPIFQ+DS++ + VTNSR+KFSIASK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180

[Close]

BLAST of Cla009198 vs. NCBI nr
Match: gi|659117591|ref|XP_008458682.1| (PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 117/183 (63.93%), Postives = 139/183 (75.96%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNF 60
           MF V+L  FEPL++ATSLLAQ++KDADVKFTPL L IIVSNRSP+F ATLQLS R FTNF
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 61  SVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFETSTEN----------- 120
           SV+H+ SSKVSL+ FHDA+LDGGSF SMTIHLLD T Q++LRFET + +           
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120

Query: 121 ----NNIGGQLEEGKFFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITL 169
                N+ GQ+E G FF V S+ELRRIIKELP+F  D+ V + VT S++KFSI SKEI L
Sbjct: 121 PPQAENL-GQVEYGNFFTVTSRELRRIIKELPLFHQDT-VSVTVTGSQVKFSIQSKEIIL 180

[Close]

BLAST of Cla009198 vs. NCBI nr
Match: gi|700190704|gb|KGN45908.1| (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 109/162 (67.28%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQIS-KDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTN 60
           MF VKLT+F+PL++ATS  AQIS  DADVKFTP K +II S+RSPRF ATLQLS ++FT+
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFET-------------- 120
           FSV+HDHSSKVSLESFHDA+LDGGSF SMTIHLLDKT Q+ILRF+T              
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 ---STENNNIG-GQLEEGKFFIVKSKELRRIIKELPIFQDDS 144
                E+N IG  +L+EGK+FIVKSK LRRIIKELPIFQ+DS
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 162

[Close]

BLAST of Cla009198 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 6.4e-45
Identity = 100/181 (55.25%), Postives = 130/181 (71.82%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQISKDADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTNF 60
           MF V+L DF+PL +ATS LAQI+++AD+KFTPL   II SNRSPRF A LQ++   F N+
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62

Query: 61  SVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFETSTENNNIG------- 120
            V++DH+S++SLESFHDALLDGG+  SMTIHLL   KQLILRFE+S+    +        
Sbjct: 63  KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLTP 122

Query: 121 ------GQLEEGKFFIVKSKELRRIIKELPIFQDDSVVRIGVTNSRIKFSIASKEITLTK 169
                 G+++  KFF + SK+LRR+I+ LPIF  DS+  +  T S++KFSIASKEI LTK
Sbjct: 123 SQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSIC-VTATGSQVKFSIASKEIVLTK 182

[Close]

BLAST of Cla009198 vs. NCBI nr
Match: gi|700190430|gb|KGN45634.1| (hypothetical protein Csa_6G002290 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1


Query: 1   MFFVKLTDFEPLMEATSLLAQISKD-ADVKFTPLKLYIIVSNRSPRFFATLQLSDRFFTN 60
           MF VKLT+FEPL+++T  LA  S + A VKFTP KL++IVSNR P F ATLQLS R+FTN
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  FSVNHDHSSKVSLESFHDALLDGGSFCSMTIHLLDKTKQLILRFET 106
           FSV+H HSSKVSLESFHDA+LDGG F +M+IHLLDKT Q+ILRF+T
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDT 106

The following BLAST results are available for this feature:

BLAST of Cla009198 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K902_CUCSA	8.7e-49	67.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1	[more]
A0A0A0K9W4_CUCSA	1.1e-32	70.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1	[more]
A0A0A0LIE0_CUCSA	2.9e-12	35.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1	[more]
A0A0A0K9W8_CUCSA	1.0e-09	27.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1	[more]

BLAST of Cla009198 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128729\|ref\|XP_008464344.1\|	1.4e-55	65.05	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
gi\|659117591\|ref\|XP_008458682.1\|	1.1e-52	63.93	PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo]	[more]
gi\|700190704\|gb\|KGN45908.1\|	1.2e-48	67.28	hypothetical protein Csa_6G020220 [Cucumis sativus]	[more]
gi\|659128753\|ref\|XP_008464355.1\|	6.4e-45	55.25	PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]	[more]
gi\|700190430\|gb\|KGN45634.1\|	1.6e-32	70.75	hypothetical protein Csa_6G002290 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007150	Hus1/Mec3

Vocabulary: **Biological Process**
Term	Definition
GO:0000077	DNA damage checkpoint

Vocabulary: **Cellular Component**
Term	Definition
GO:0030896	checkpoint clamp complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000077	DNA damage checkpoint
biological_process	GO:0008150	biological_process
biological_process	GO:0006260	DNA replication
biological_process	GO:0006275	regulation of DNA replication
cellular_component	GO:0030896	checkpoint clamp complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0042575	DNA polymerase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030337	DNA polymerase processivity factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009198	Cla009198.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007150	Checkpoint protein Hus1/Mec3	PFAM	PF04005	Hus1	coord: 4..138 score: 4.
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 1..107 score: 5.
None	No IPR available	unknown	SSF55979	DNA clamp	coord: 1..105 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009198	Cla97C06G113490	Watermelon (97103) v2	wmwmbB406
Cla009198	Csa6G002290	Cucumber (Chinese Long) v2	cuwmB546
Cla009198	ClCG06G004070	Watermelon (Charleston Gray)	wcgwmB344
Cla009198	CSPI06G00270	Wild cucumber (PI 183967)	cpiwmB565
Cla009198	CmaCh17G004140	Cucurbita maxima (Rimu)	cmawmB358
Cla009198	CmoCh17G003960	Cucurbita moschata (Rifu)	cmowmB353
Cla009198	Lsi09G015390	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla009198	Cp4.1LG12g03560	Cucurbita pepo (Zucchini)	cpewmB161
Cla009198	CsGy6G000330	Cucumber (Gy14) v2	cgybwmB511
Cla009198	MELO3C035205.2	Melon (DHL92) v3.6.1	medwmB139
Cla009198	Carg05587	Silver-seed gourd	carwmB0073
Cla009198	CsaV3_6G000340	Cucumber (Chinese Long) v3	cucwmB572

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009198	Melon (DHL92) v3.5.1	mewmB141