Cla009038 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009038
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ras-related protein Rab-25 (AHRD V1 ***- RAB25_CANFA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type
Location	Chr1 : 20633651 .. 20635124 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTTATTCTGAGGAGGAAAAAACTGAGGATTATCTTTTCAAGATTGTTTTAATTGGTGATTCAGCCGTGGGAAAATCAAATTTGCTCGCTAGATTTGCTAGAGATGAATTTTACCCTAATTCAAAGTCAACCATTGGAGTGGAGTTCCAAACCCAAAAGATGGAAATAAACGGTAAGGAAATCAAAGCTCAGATATGGGATACAGCTGGTCAAGAGCGATTTAGGGCTGTTACGTCTGCATATTATAGGGGAGCTGTTGGAGCTCTTCTGGTATATGACATTAGTAGGCGTCAGACCTTTGACAGCATCGGGAGATGGCTGAATGAACTTCACAGTGAGTATATAAAGATGTTATGTGATGTTTCTTGAAAATAAAATCTCCAATATTACATTGTCATGCCTTTTTATTTGATTCTTGTCCTAGTTGTTGAACTGGTTCTCTTCTCATTACTCTATCAGTTTGTATTACCGTATCCTTTTTATGAATTTAGACAGTAGTTGATGTTGAAAAAAAATTAAGAAACAGTGATTTCCTTTCTGCTTGAGTGTTAGAAGGCTTCAAAGATCTTTAATTCTACAATTCGCCCTCACCAGTTTGTGTTCTGGAAATAGTAGAATATTCTTTAAGAAAGAGGACTTTAAGTAATGGAAGATCATAAGTTGGAATTTCGTCGAGAGCTGCATCTGAATTGGAAATGTAAAATAAAAGGAGAAAAAATCACTGTGAGAAGTTTCTTGGTTGTAATTATATCGTTACAGTGTTCAATCAACGCTTTTAAAGGCTCAAGCATTTGTCAATCTTTTGGTTTGATGTTTCTCTGTGTTTGGCCTGGTTTGTCTTTGTTTAGTTTATCTCTTAGTTCCTTTCTTGTGCTTCAAAGTTGAAGGTTTTCTTCTTTTTGGGCCTGTGTTCTTCAGTTGTGTTTTTCTTTTTAATTTATTTATTTTTTTTAATTTTTTTTTTTAGAGATCTTGTATTTTGGAGCAGTAATCTTCATTATATGAGTGGATTTTTTTTGTTTCTGTTTAAAGAAAAAAGGCTCAAGCAGTATATTGTTTCTGTTCAACTGATGTTGGGAAGTTTGCCTTGTCTTAACCTAAAAGGACTGATTAAGTAATCTTTCATTGAACAGCTCATTCTGACATGAACGTAGTAACCATACTGGTTGGCAACAAGTCTGATCTCAAGGATGCTAGAGAAGTACCTACTGCTGAAGGCAAGTCTTTGGCAGAAGCTCAGGGTCTGTTTTTTATAGAAACCTCAGCCCTCGATTCTTCGAATGTGACGAACGCATTTCAGACGGTCGTGAAAGAAATCTACAACATATTGAGCCGAAAAGTTATGATATCTCAAGAACTTAACAAGCAGGATGTGAGCTGGATGGAGAATGGAAAGACTACTGTAGTTATACAGGGAGAGGACCAAGTAGAAGGAGAGCCCAAAAAAGGTGGGTGCTGCTCATCCTAG

mRNA sequence

ATGGCTTTTTATTCTGAGGAGGAAAAAACTGAGGATTATCTTTTCAAGATTGTTTTAATTGGTGATTCAGCCGTGGGAAAATCAAATTTGCTCGCTAGATTTGCTAGAGATGAATTTTACCCTAATTCAAAGTCAACCATTGGAGTGGAGTTCCAAACCCAAAAGATGGAAATAAACGGTAAGGAAATCAAAGCTCAGATATGGGATACAGCTGGTCAAGAGCGATTTAGGGCTGTTACGTCTGCATATTATAGGGGAGCTGTTGGAGCTCTTCTGGTATATGACATTAGTAGGCGTCAGACCTTTGACAGCATCGGGAGATGGCTGAATGAACTTCACACTCATTCTGACATGAACGTAGTAACCATACTGGTTGGCAACAAGTCTGATCTCAAGGATGCTAGAGAAGTACCTACTGCTGAAGGCAAGTCTTTGGCAGAAGCTCAGGGTCTGTTTTTTATAGAAACCTCAGCCCTCGATTCTTCGAATGTGACGAACGCATTTCAGACGGTCGTGAAAGAAATCTACAACATATTGAGCCGAAAAGTTATGATATCTCAAGAACTTAACAAGCAGGATGTGAGCTGGATGGAGAATGGAAAGACTACTGTAGTTATACAGGGAGAGGACCAAGTAGAAGGAGAGCCCAAAAAAGGTGGGTGCTGCTCATCCTAG

Coding sequence (CDS)

ATGGCTTTTTATTCTGAGGAGGAAAAAACTGAGGATTATCTTTTCAAGATTGTTTTAATTGGTGATTCAGCCGTGGGAAAATCAAATTTGCTCGCTAGATTTGCTAGAGATGAATTTTACCCTAATTCAAAGTCAACCATTGGAGTGGAGTTCCAAACCCAAAAGATGGAAATAAACGGTAAGGAAATCAAAGCTCAGATATGGGATACAGCTGGTCAAGAGCGATTTAGGGCTGTTACGTCTGCATATTATAGGGGAGCTGTTGGAGCTCTTCTGGTATATGACATTAGTAGGCGTCAGACCTTTGACAGCATCGGGAGATGGCTGAATGAACTTCACACTCATTCTGACATGAACGTAGTAACCATACTGGTTGGCAACAAGTCTGATCTCAAGGATGCTAGAGAAGTACCTACTGCTGAAGGCAAGTCTTTGGCAGAAGCTCAGGGTCTGTTTTTTATAGAAACCTCAGCCCTCGATTCTTCGAATGTGACGAACGCATTTCAGACGGTCGTGAAAGAAATCTACAACATATTGAGCCGAAAAGTTATGATATCTCAAGAACTTAACAAGCAGGATGTGAGCTGGATGGAGAATGGAAAGACTACTGTAGTTATACAGGGAGAGGACCAAGTAGAAGGAGAGCCCAAAAAAGGTGGGTGCTGCTCATCCTAG

Protein sequence

MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILSRKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS

Homology

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BLAST of Cla009038 vs. Swiss-Prot
Match: RAA5A_ARATH (Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 7.9e-104
Identity = 197/224 (87.95%), Postives = 205/224 (91.52%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSE++K+EDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYSEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF SIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKD REV TAEGK+LAEAQGLFF+ETSALDSSNV  AF+TVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVM SQELNKQD + + NGK  VVI  + Q  GE KKGGCCSS
Sbjct: 181 RKVMSSQELNKQDPASLSNGK-KVVIPSDGQ--GEFKKGGCCSS 221

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BLAST of Cla009038 vs. Swiss-Prot
Match: RAA5D_ARATH (Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.7e-70
Identity = 138/220 (62.73%), Postives = 170/220 (77.27%), Query Frame = 1


Query: 5   SEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEIK 64
           S++E  E+YLFKIV+IGDSAVGKSNLL+R+AR+EF  +SK+TIGVEFQTQ MEI GKE+K
Sbjct: 3   SDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVK 62

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
           AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRR TF+S+GRWL+EL THSD  V  +L
Sbjct: 63  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARML 122

Query: 125 VGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILSRKVM 184
           VGNK DL+  R V   EGK+LAE +GLFF+ETSALDS+NV  AF+ V+++IY  +SRK  
Sbjct: 123 VGNKCDLESIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRK-Q 182

Query: 185 ISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           ++ +  K ++S M+N  + V    +   +G      CCSS
Sbjct: 183 LNSDTYKTELS-MKNRVSLVKDDNKSSTQG--FGFSCCSS 218

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BLAST of Cla009038 vs. Swiss-Prot
Match: RAA5C_ARATH (Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 132/198 (66.67%), Postives = 163/198 (82.32%), Query Frame = 1


Query: 6   EEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEIKA 65
           ++E+ E+YLFKIV+IGDSAVGKSNLL R+AR+EF PNSK+TIGVEFQTQ M I+GKE+KA
Sbjct: 4   DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKA 63

Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
           QIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+R  TF+++GRWL+EL+THSD  V  +L+
Sbjct: 64  QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLI 123

Query: 126 GNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILSRKVMI 185
           GNK DL+  R V   EGKSLAE++GLFF+ETSALDS+NV  AF+ V++EIY+ +SRK + 
Sbjct: 124 GNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLN 183

Query: 186 S----QELNKQDVSWMEN 200
           S    +EL    VS ++N
Sbjct: 184 SDSYKEELTVNRVSLVKN 201

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BLAST of Cla009038 vs. Swiss-Prot
Match: RAA5E_ARATH (Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.8e-69
Identity = 134/220 (60.91%), Postives = 164/220 (74.55%), Query Frame = 1


Query: 5   SEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEIK 64
           S++E  E+YLFKIV+IGDSAVGKSNLL+R+AR+EF  NSK+TIGVEFQTQ MEI GKE+K
Sbjct: 3   SDDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVK 62

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
           AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+RR TF+S+GRWL+EL  HSD  V  +L
Sbjct: 63  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARML 122

Query: 125 VGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILSRKVM 184
           VGNK DL++ R V   EGK+LAE +GLFF+ETSALDS+NV  AF+ V+ +IYN +SRK  
Sbjct: 123 VGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRK-- 182

Query: 185 ISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
              +LN              +++ ++    +     CCSS
Sbjct: 183 ---QLNSDTYKDELTVNRVSLVKDDNSASKQSSGFSCCSS 217

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BLAST of Cla009038 vs. Swiss-Prot
Match: RAA5B_ARATH (Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-68
Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 1


Query: 6   EEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEIKA 65
           E+++ E+YLFKIVLIGDSAVGKSNLL+RF+RDEF  NSK+TIGVEFQTQ +EI GKE+KA
Sbjct: 4   EDDRGEEYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKA 63

Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
           QIWDTAGQERFRAVTSAYYRGA GAL+VYDI+R  TF+S+ RWL EL+TH D  V  +LV
Sbjct: 64  QIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLV 123

Query: 126 GNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILSRKVMI 185
           GNK DL+D R V   EGK+LAE +GLFF+ETSALD++NV  AF+ V++EI+N +SRK++ 
Sbjct: 124 GNKCDLEDIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLN 183

Query: 186 SQ----ELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCS 224
           S     EL+   VS + N         +D  E   +   CCS
Sbjct: 184 SDAYKAELSVNRVSLVNN---------QDGSESSWRNPSCCS 216

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BLAST of Cla009038 vs. TrEMBL
Match: A0A0A0LVS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181510 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 2.5e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK+EING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIEING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVMISQEL KQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS
Sbjct: 181 RKVMISQELKKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 224

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BLAST of Cla009038 vs. TrEMBL
Match: M5X299_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011035mg PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 3.7e-108
Identity = 205/227 (90.31%), Postives = 213/227 (93.83%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTIL+GNKSDLKDAREVPT+EGK+LAEAQGLFF+ETSALDSSNV  AFQ VVKEIYNILS
Sbjct: 121 VTILIGNKSDLKDAREVPTSEGKALAEAQGLFFMETSALDSSNVVAAFQMVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVE---GEPKKGGCCSS 225
           RKVMISQEL KQD SW+ NGK TVV+QG+   E    EPKKGGCCSS
Sbjct: 181 RKVMISQELKKQDPSWVGNGK-TVVLQGDGNQEDAAAEPKKGGCCSS 226

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BLAST of Cla009038 vs. TrEMBL
Match: Q41654_VICFA (Guanine nucleotide regulatory protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.8e-108
Identity = 202/224 (90.18%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFY+EEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREVPT EGK+LAEAQGLFF+ETSALDSSNV +AFQTVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTPEGKALAEAQGLFFMETSALDSSNVVSAFQTVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVM+SQEL KQD  W ENGKT V+ +G+ +VE E KK GCCSS
Sbjct: 181 RKVMMSQELKKQDTPWTENGKTVVLQEGDREVEVESKK-GCCSS 223

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BLAST of Cla009038 vs. TrEMBL
Match: A0A0B2Q453_GLYSO (Ras-related protein RABA5a OS=Glycine soja GN=glysoja_020942 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.4e-107
Identity = 203/224 (90.62%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFY+EEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREV TAEGK+LAEAQGLFF+ETSALDSSNV  AF+TVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVATAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVMISQELNKQDV+ +ENGK TVV+QGE  VE    K GCCSS
Sbjct: 181 RKVMISQELNKQDVTRIENGK-TVVLQGEGDVEAAQSKKGCCSS 223

[Close]

BLAST of Cla009038 vs. TrEMBL
Match: I1LBW5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G171600 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.4e-107
Identity = 203/224 (90.62%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFY+EEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREV TAEGK+LAEAQGLFF+ETSALDSSNV  AF+TVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVATAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVMISQELNKQDV+ +ENGK TVV+QGE  VE    K GCCSS
Sbjct: 181 RKVMISQELNKQDVTRIENGK-TVVLQGEGDVEAAQSKKGCCSS 223

[Close]

BLAST of Cla009038 vs. NCBI nr
Match: gi|449443538|ref|XP_004139534.1| (PREDICTED: ras-related protein RABA5a [Cucumis sativus])

HSP 1 Score: 439.5 bits (1129), Expect = 3.5e-120
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK+EING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIEING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVMISQEL KQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS
Sbjct: 181 RKVMISQELKKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 224

[Close]

BLAST of Cla009038 vs. NCBI nr
Match: gi|659127268|ref|XP_008463615.1| (PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABA5a [Cucumis melo])

HSP 1 Score: 434.1 bits (1115), Expect = 1.5e-118
Identity = 222/224 (99.11%), Postives = 222/224 (99.11%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVMISQEL KQDVSWMENGKTTVVIQGEDQVEGEPKK GCCSS
Sbjct: 181 RKVMISQELKKQDVSWMENGKTTVVIQGEDQVEGEPKK-GCCSS 223

[Close]

BLAST of Cla009038 vs. NCBI nr
Match: gi|595868231|ref|XP_007211991.1| (hypothetical protein PRUPE_ppa011035mg [Prunus persica])

HSP 1 Score: 399.1 bits (1024), Expect = 5.3e-108
Identity = 205/227 (90.31%), Postives = 213/227 (93.83%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTIL+GNKSDLKDAREVPT+EGK+LAEAQGLFF+ETSALDSSNV  AFQ VVKEIYNILS
Sbjct: 121 VTILIGNKSDLKDAREVPTSEGKALAEAQGLFFMETSALDSSNVVAAFQMVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVE---GEPKKGGCCSS 225
           RKVMISQEL KQD SW+ NGK TVV+QG+   E    EPKKGGCCSS
Sbjct: 181 RKVMISQELKKQDPSWVGNGK-TVVLQGDGNQEDAAAEPKKGGCCSS 226

[Close]

BLAST of Cla009038 vs. NCBI nr
Match: gi|560504|emb|CAA82710.1| (guanine nucleotide regulatory protein [Vicia faba])

HSP 1 Score: 398.7 bits (1023), Expect = 6.9e-108
Identity = 202/224 (90.18%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFY+EEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREVPT EGK+LAEAQGLFF+ETSALDSSNV +AFQTVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTPEGKALAEAQGLFFMETSALDSSNVVSAFQTVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGEDQVEGEPKKGGCCSS 225
           RKVM+SQEL KQD  W ENGKT V+ +G+ +VE E KK GCCSS
Sbjct: 181 RKVMMSQELKKQDTPWTENGKTVVLQEGDREVEVESKK-GCCSS 223

[Close]

BLAST of Cla009038 vs. NCBI nr
Match: gi|1009166874|ref|XP_015901821.1| (PREDICTED: ras-related protein RABA5a [Ziziphus jujuba])

HSP 1 Score: 397.9 bits (1021), Expect = 1.2e-107
Identity = 204/226 (90.27%), Postives = 214/226 (94.69%), Query Frame = 1


Query: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60
           MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF+SIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180
           VTILVGNKSDLKDAREV TAEGK+LAEAQGLFF+ETSALDSSNV++AFQTVVKEIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVSTAEGKALAEAQGLFFMETSALDSSNVSSAFQTVVKEIYNILS 180

Query: 181 RKVMISQELNKQDVSWMENGKTTVVIQGED--QVEGEPKKGGCCSS 225
           RKVM+SQEL KQD  W+ NGK TVV+QGED  +   EPKK GCCSS
Sbjct: 181 RKVMMSQELKKQDPGWVGNGK-TVVLQGEDIQEASTEPKKAGCCSS 225

The following BLAST results are available for this feature:

BLAST of Cla009038 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAA5A_ARATH	7.9e-104	87.95	Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1	[more]
RAA5D_ARATH	9.7e-70	62.73	Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=1 SV=1	[more]
RAA5C_ARATH	1.3e-69	66.67	Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1 SV=1	[more]
RAA5E_ARATH	4.8e-69	60.91	Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2 SV=1	[more]
RAA5B_ARATH	2.4e-68	61.26	Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1	[more]

BLAST of Cla009038 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVS7_CUCSA	2.5e-120	99.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181510 PE=4 SV=1	[more]
M5X299_PRUPE	3.7e-108	90.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011035mg PE=4 SV=1	[more]
Q41654_VICFA	4.8e-108	90.18	Guanine nucleotide regulatory protein OS=Vicia faba PE=2 SV=1	[more]
A0A0B2Q453_GLYSO	2.4e-107	90.63	Ras-related protein RABA5a OS=Glycine soja GN=glysoja_020942 PE=4 SV=1	[more]
I1LBW5_SOYBN	2.4e-107	90.63	Uncharacterized protein OS=Glycine max GN=GLYMA_10G171600 PE=4 SV=1	[more]

BLAST of Cla009038 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443538\|ref\|XP_004139534.1\|	3.5e-120	99.11	PREDICTED: ras-related protein RABA5a [Cucumis sativus]	[more]
gi\|659127268\|ref\|XP_008463615.1\|	1.5e-118	99.11	PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABA5a [Cucumis melo]	[more]
gi\|595868231\|ref\|XP_007211991.1\|	5.3e-108	90.31	hypothetical protein PRUPE_ppa011035mg [Prunus persica]	[more]
gi\|560504\|emb\|CAA82710.1\|	6.9e-108	90.18	guanine nucleotide regulatory protein [Vicia faba]	[more]
gi\|1009166874\|ref\|XP_015901821.1\|	1.2e-107	90.27	PREDICTED: ras-related protein RABA5a [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0008150	biological_process
biological_process	GO:0032482	Rab protein signal transduction
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12478	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU15861	watermelon EST collection version 2.0	transcribed_cluster
WMU45487	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009038	Cla009038.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15861	WMU15861	transcribed_cluster
WMU12478	WMU12478	transcribed_cluster
WMU45487	WMU45487	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 16..176 score: 2.1
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 13..172 score: 1.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 7..222 score: 1.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..191 score: 5.28
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 38..54 score: 1.3E-40coord: 56..78 score: 1.3E-40coord: 153..175 score: 1.3E-40coord: 118..131 score: 1.3E-40coord: 15..36 score: 1.3
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 7..224 score: 1.7E
None	No IPR available	PANTHER	PTHR24073:SF430	RAS-RELATED PROTEIN RABA5A	coord: 7..224 score: 1.7E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 12..178 score: 5.6
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 17..178 score: 5.6
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 15..178 score: 2.2E
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 20..212 score: 3.
None	No IPR available	PROFILE	PS51419	RAB	coord: 10..222 score: 34

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009038	Cla97C01G010380	Watermelon (97103) v2	wmwmbB239
Cla009038	Csa1G181510	Cucumber (Chinese Long) v2	cuwmB051
Cla009038	MELO3C025545	Melon (DHL92) v3.5.1	mewmB168
Cla009038	CSPI01G15800	Wild cucumber (PI 183967)	cpiwmB054
Cla009038	CmaCh18G005990	Cucurbita maxima (Rimu)	cmawmB381
Cla009038	CmaCh13G003820	Cucurbita maxima (Rimu)	cmawmB197
Cla009038	CmoCh13G004070	Cucurbita moschata (Rifu)	cmowmB184
Cla009038	CmoCh18G005950	Cucurbita moschata (Rifu)	cmowmB381
Cla009038	Lsi02G011230	Bottle gourd (USVL1VR-Ls)	lsiwmB201
Cla009038	Cp4.1LG09g06500	Cucurbita pepo (Zucchini)	cpewmB041
Cla009038	Cp4.1LG20g06630	Cucurbita pepo (Zucchini)	cpewmB521
Cla009038	Carg25110	Silver-seed gourd	carwmB1039
Cla009038	CsaV3_UNG049340	Cucumber (Chinese Long) v3	cucwmB575
Cla009038	Bhi08G000633	Wax gourd	wgowmB511

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009038	Cucumber (Chinese Long) v3	cucwmB057
Cla009038	Cucumber (Gy14) v1	cgywmB344
Cla009038	Watermelon (Charleston Gray)	wcgwmB146
Cla009038	Cucumber (Gy14) v2	cgybwmB051
Cla009038	Melon (DHL92) v3.6.1	medwmB154
Cla009038	Silver-seed gourd	carwmB0052