Cla008390 (gene) Watermelon (97103) v1

Overview
NameCla008390
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionStromal membrane-associated protein 1 (AHRD V1 *--- E3KJ46_PUCGT); contains Interpro domain(s) IPR001164 Arf GTPase activating protein
LocationChr1 : 9754064 .. 9755619 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACGGTCTACTACTCTTGATACATGGCTACCGGAACAGGTTGCTTTTATGCAGTGTAAGAATATTTGGCATTTATTAAATTTGTCATTTCAGTAAGAAAAATTAAGTTAGGAACTTCAATAGACCATTGTCAATCAAAATTGCTACTGAATTGGGTTGATACTTGATCCCCAAAGGAAAATCTCCTGCTCAGATATCTTATTGTCAGAAAATTAAATTTTCTTTTTTGTCAGCTACTTGAGGTTGATGGTCATTTACATATTGTTTAATGTATTGGTCATTGTATTTGTAGCGATGGGAAATGAGAGATCGAATTGTTACTGGGAAGCAGAACTACCACCAAATTTTGATAGGAGAGGGCAAATGTTCATTCGTGCCAAGTAATTGCTCTGCTTAAATTTAGAACAACTTTTTAAAGAAATTTGGATATGATTTATTCATTCTTGTTCTTTTCTTTTTATCTAACTTTGTTGAGGAACTTCCAGGTACGAAGAGAAAAGGTGGGTTTCTAAGAACAGAACATGCCCAGCTCCAAAATTAGGTGGAATGAGAAGTATTTATTGTGATTCGATTGAAGCTGGACCCAAATGCTCTATTTCAAAGAAGATGAGGAACTATTCTCTTGAGGAAGAGATTCTCACTAAGCACGTGGCAAAAGCCACTCCCACAGTAGTAAAAGCACGCGGGGTAAGTTTGTTTGTAATCCTGTTGCATAGTATTCTTTATTCCGGTTTTCCTTTAAGACCTATTTGTTTCACAGATATTGTCAAGAAATTTCAAACAAACATTAAATATTCTTATTTGTTTAACAGTATTTCACTTTTTAAAACCTATGATGTTATTATCCAGATAACATTAAAACCCATCTGACATTTGCTTTTTAATACTCTCCATAATTGTGAGATTTTTATACCTGATATAAGATTGATGTGAAAGGACACGAACAATGCCTAAACCTGAGGATATTCCAAAACCTTTTCGATTGCGAAAAAAAAAAAGGTGGTGCACAAATTACACCAAATTCTTTTATATCTGTAGCCTTTTAATGATTATTAGCAATTGGAAGGCCTTCCCTTCATTAGTCTAGAATTCTGGGGAAGGTTTTTGTGCCAAAGGCTTTAGGTGGCAAAAATCATGCATTAGAAAACTTAGAATGCTACCCTTTTCATTTCTGTCTTCCTAGCGATAACACTGCAGCAGTATAGATTCTCAAATGAATTTAAGATATATATATATTTTTTTAAAATGGTATCCAGGCCATATTAACCCCCTATATACTTTATTGTTATTCTATGCTTGCCTTATCTGATAAGTAAGAAGCTATAGTTTTAAGTGTGTGATCATGGTGGTTCATATTTCTCTTGCAGAGTTCTTTAGATATGAAGAACCATATGATTGCTTCAGCTCCTCCAAGAGGGCCTTCGTTTGTGAAAGAAATTGATCCATCAACGAAAAATACCAGCGGAACCCCAGATCTCTTCAAATATGTCCAAGATGCAAAACAGGACTGCTCTAGTGTAATTCCAGCTCGTTGGGCAACTTTCGACTGTAAGTGA

mRNA sequence

GTACGGTCTACTACTCTTGATACATGGCTACCGGAACAGGTTGCTTTTATGCAGTCGATGGGAAATGAGAGATCGAATTGTTACTGGGAAGCAGAACTACCACCAAATTTTGATAGGAGAGGGCAAATGTTCATTCGTGCCAAGTACGAAGAGAAAAGGTGGGTTTCTAAGAACAGAACATGCCCAGCTCCAAAATTAGGTGGAATGAGAAGTATTTATTGTGATTCGATTGAAGCTGGACCCAAATGCTCTATTTCAAAGAAGATGAGGAACTATTCTCTTGAGGAAGAGATTCTCACTAAGCACGTGGCAAAAGCCACTCCCACAGTAGTAAAAGCACGCGGGAGTTCTTTAGATATGAAGAACCATATGATTGCTTCAGCTCCTCCAAGAGGGCCTTCGTTTGTGAAAGAAATTGATCCATCAACGAAAAATACCAGCGGAACCCCAGATCTCTTCAAATATGTCCAAGATGCAAAACAGGACTGCTCTAGTGTAATTCCAGCTCGTTGGGCAACTTTCGACTGTAAGTGA

Coding sequence (CDS)

GTACGGTCTACTACTCTTGATACATGGCTACCGGAACAGGTTGCTTTTATGCAGTCGATGGGAAATGAGAGATCGAATTGTTACTGGGAAGCAGAACTACCACCAAATTTTGATAGGAGAGGGCAAATGTTCATTCGTGCCAAGTACGAAGAGAAAAGGTGGGTTTCTAAGAACAGAACATGCCCAGCTCCAAAATTAGGTGGAATGAGAAGTATTTATTGTGATTCGATTGAAGCTGGACCCAAATGCTCTATTTCAAAGAAGATGAGGAACTATTCTCTTGAGGAAGAGATTCTCACTAAGCACGTGGCAAAAGCCACTCCCACAGTAGTAAAAGCACGCGGGAGTTCTTTAGATATGAAGAACCATATGATTGCTTCAGCTCCTCCAAGAGGGCCTTCGTTTGTGAAAGAAATTGATCCATCAACGAAAAATACCAGCGGAACCCCAGATCTCTTCAAATATGTCCAAGATGCAAAACAGGACTGCTCTAGTGTAATTCCAGCTCGTTGGGCAACTTTCGACTGTAAGTGA

Protein sequence

VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRGQMFIRAKYEEKRWVSKNRTCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLDMKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFKYVQDAKQDCSSVIPARWATFDCK
Homology
[Close]
BLAST of Cla008390 vs. Swiss-Prot
Match: AGD15_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-29
Identity = 77/178 (43.26%), Postives = 98/178 (55.06%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRGQ-MFIRAKYEEKRWVSKNR 60
           VRS TLDTWLP+QVAFM+S GN + N YWE+ELP +F+R     FIRAKY EKRWVS   
Sbjct: 68  VRSITLDTWLPDQVAFMKSTGNAKGNEYWESELPQHFERSSSDTFIRAKYSEKRWVSPGA 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
             PAP +  +       +E+G K    KK R  SL+EEIL  HV + TP   + R  S+D
Sbjct: 128 IQPAPIVSQLSCKVSHLVESGYKPETPKKARTLSLDEEILLHHVLQVTPPETRTRAGSVD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFKYVQDAKQDCSSVI--PARWATFD 176
           MK ++        P F K   P+ KN +       +  +  Q+  + I  P+ WATFD
Sbjct: 188 MKENVYVVPL---PEFKK---PNQKNEN-------FSSEVNQNRRTTIAPPSSWATFD 232

[Close]
BLAST of Cla008390 vs. Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-22
Identity = 63/152 (41.45%), Postives = 83/152 (54.61%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRG-QMFIRAKYEEKRWVSKNR 60
           VRS TLDTWLPEQVAF+QSMGN+++N YWEAELPPN+DR G + FIRAKYEEKRWVS+  
Sbjct: 68  VRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRGE 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
              +P            +E   + S+ +    Y         ++ +   T+  +R  +  
Sbjct: 128 KARSP----------PRVEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPASRTRNNV 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTK-NTSGTP 151
               +    PP+GPS V  I P  K  ++ TP
Sbjct: 188 AATRINLPVPPQGPSQV--IKPQQKMESAATP 207

[Close]
BLAST of Cla008390 vs. Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-08
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNF-----DRRGQMFIRAKYEEKRWV 59
           V+S  LD W PEQ+  MQ MGN ++   +EA LP NF     D+  + FIR KYE+K++ 
Sbjct: 70  VKSVNLDQWTPEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYY 129

[Close]
BLAST of Cla008390 vs. Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNF-----DRRGQMFIRAKYEEKRWV 59
           V+S  LD W  EQ+  MQ MGN ++   +EA LP NF     D+  + FIR KYE+K++ 
Sbjct: 70  VKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYY 129

[Close]
BLAST of Cla008390 vs. Swiss-Prot
Match: YIQ9_SCHPO (Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 39/132 (29.55%), Postives = 56/132 (42.42%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNF---DRRGQMFIRAKYEEKRWVSK 60
           V+S  LD+W  EQ   M   GNER+N YWEA+L       D +   FI+ KYE K+WV  
Sbjct: 66  VKSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGGHVPSDSKIATFIKTKYEFKKWVLY 125

Query: 61  NRTCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSS 120
               P+P+            E      ++   R+ S       K  + AT T V ++  +
Sbjct: 126 PE-IPSPETLKPEQNTRPVSEVNASLDLNTASRSSSAHS---VKSTSSATVTNVTSKKEA 185

Query: 121 LDMKNHMIASAP 130
           +     +  S+P
Sbjct: 186 ISATTSLAQSSP 193

[Close]
BLAST of Cla008390 vs. TrEMBL
Match: A0A0A0LQZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043060 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.0e-81
Identity = 150/176 (85.23%), Postives = 162/176 (92.05%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRR-GQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR+  Q FIRAKYEEKRWVS+NR
Sbjct: 68  VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRKENQTFIRAKYEEKRWVSRNR 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
           T PAP+LGG  S+YCDSIE GP+ SISKKMRN+SLEEEILTKHV +ATPTV KARG+SLD
Sbjct: 128 THPAPQLGGTSSVYCDSIEIGPRSSISKKMRNFSLEEEILTKHVTRATPTVAKARGNSLD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFKYVQDAKQDCSSVIPARWATFD 176
           M+NHMI SAPPRGPSFVKEI+PSTKNT+ +PDLFKYVQ AKQD SSVIPARWATFD
Sbjct: 188 MRNHMITSAPPRGPSFVKEINPSTKNTNESPDLFKYVQHAKQDRSSVIPARWATFD 243

[Close]
BLAST of Cla008390 vs. TrEMBL
Match: A0A067E0K8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041407mg PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.9e-44
Identity = 101/182 (55.49%), Postives = 122/182 (67.03%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR-RGQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNE+SN +WEAELPPNFDR R + FIR KYEE++WV K  
Sbjct: 51  VRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGA 110

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKAT--PTVVKARGSS 120
           T P  K   + +     +E G K  I +K R  SLEEEILTKH+A+    PTV ++RG S
Sbjct: 111 TQPTTKAVQINNNVSKFLE-GLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGS 170

Query: 121 LDMKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFK--YVQDAKQDCSSVIPARWATFD 178
           LDM     A  PPR P  V E+   T N +GT DL+   YV + +Q+ +   P+RWATFD
Sbjct: 171 LDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFD 230

[Close]
BLAST of Cla008390 vs. TrEMBL
Match: M5WVB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010611mg PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 91/178 (51.12%), Postives = 119/178 (66.85%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRG-QMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFM+S+GNE++N YWE ELP +F+R   + FIRAKYE K WV+KN 
Sbjct: 68  VRSTTLDTWLPEQVAFMESVGNEKANSYWEKELPAHFERSEIKKFIRAKYEGKMWVAKNA 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
             PAPKL  M       +E G    + KK R +SLEE +L+KH+ ++ P++ ++RG SLD
Sbjct: 128 KQPAPKLVEMSISSNKLVEGGATSEVPKKTRRHSLEEAVLSKHLGQSAPSMARSRGISLD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFK--YVQDAKQDCSSVIPARWATFD 176
           + +    S PP GP  + E D ++  ++GT DLF   YV DAKQD  +  P RW TFD
Sbjct: 188 LNHKFTTSPPPNGPPSMMECDTASNKSNGTTDLFSLLYVPDAKQDYPT--PPRWQTFD 243

[Close]
BLAST of Cla008390 vs. TrEMBL
Match: F6HVT2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0053g00430 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.2e-38
Identity = 96/183 (52.46%), Postives = 112/183 (61.20%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR-RGQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNERSN YWEA LPPN+DR   + FIRAKY EK+WVSK  
Sbjct: 68  VRSTTLDTWLPEQVAFMQSMGNERSNDYWEANLPPNYDRSENERFIRAKYVEKKWVSKKA 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
           T P  K     S +  S+E+G +  I  K R  SLEEEI T H+A+  P   + R  SLD
Sbjct: 128 TQPTTKPSEKSSNFHKSMESGTRSGIRSKTRKLSLEEEIFTNHIAQIAPPAGRTRWGSLD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLF--KYVQDAK---QDCSSVIPARWATF 178
           +      S P +GP F    + S    + T DLF   YVQDAK      SS   + WATF
Sbjct: 188 LNK---ISPPEKGPPFT-GCNTSLNKGNATTDLFHLPYVQDAKPRRSIASSSYYSSWATF 246

[Close]
BLAST of Cla008390 vs. TrEMBL
Match: A0A068TQP2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022721001 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.5e-35
Identity = 89/180 (49.44%), Postives = 112/180 (62.22%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRG-QMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGN+++N YWEAELP N DR   + FIRAKY+EK+W S   
Sbjct: 68  VRSTTLDTWLPEQVAFMQSMGNQKANSYWEAELPLNVDRSNMEKFIRAKYQEKKWSSPKA 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
           T P   +G   SI  D+  AG +  I +K R YSLEEE+ +KH+++      + R  SLD
Sbjct: 128 TQPIHAVGEKSSI-TDTSAAGTRNGIPRKARKYSLEEEMFSKHMSQ-IGLAARPRTGSLD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLF--KYVQDAKQDCSSVIPARWATFDCK 178
           +   M++   P     V E   S  N     DLF   YV D KQ+ + V P+RWATF+CK
Sbjct: 188 IAELMVS---PTTDGLVNENPASVNNVGTEQDLFGLLYVSDVKQNRTLVPPSRWATFECK 242

[Close]
BLAST of Cla008390 vs. NCBI nr
Match: gi|659066941|ref|XP_008467216.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 isoform X1 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 155/176 (88.07%), Postives = 167/176 (94.89%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRR-GQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR+  QMFIRAKYEEKRWVSKNR
Sbjct: 68  VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRKENQMFIRAKYEEKRWVSKNR 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
           T PAP+LGG RS+YCDS+E GP+ SISKKMRN+SLEEEILTKHV +ATPTV KARG+SLD
Sbjct: 128 THPAPQLGGARSVYCDSVEIGPRNSISKKMRNFSLEEEILTKHVTRATPTVAKARGNSLD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFKYVQDAKQDCSSVIPARWATFD 176
           M+NHMIASAPPRGPSFVKEIDPSTKNT+ +PDLFKYVQDAK+DCSSVIPARWATFD
Sbjct: 188 MRNHMIASAPPRGPSFVKEIDPSTKNTNQSPDLFKYVQDAKKDCSSVIPARWATFD 243

[Close]
BLAST of Cla008390 vs. NCBI nr
Match: gi|778657482|ref|XP_004137634.2| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81
Identity = 150/176 (85.23%), Postives = 162/176 (92.05%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRR-GQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR+  Q FIRAKYEEKRWVS+NR
Sbjct: 68  VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRKENQTFIRAKYEEKRWVSRNR 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLD 120
           T PAP+LGG  S+YCDSIE GP+ SISKKMRN+SLEEEILTKHV +ATPTV KARG+SLD
Sbjct: 128 THPAPQLGGTSSVYCDSIEIGPRSSISKKMRNFSLEEEILTKHVTRATPTVAKARGNSLD 187

Query: 121 MKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFKYVQDAKQDCSSVIPARWATFD 176
           M+NHMI SAPPRGPSFVKEI+PSTKNT+ +PDLFKYVQ AKQD SSVIPARWATFD
Sbjct: 188 MRNHMITSAPPRGPSFVKEINPSTKNTNESPDLFKYVQHAKQDRSSVIPARWATFD 243

[Close]
BLAST of Cla008390 vs. NCBI nr
Match: gi|659066944|ref|XP_008467226.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 isoform X2 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRR-GQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR+  QMFIRAKYEEKRWVSKNR
Sbjct: 68  VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRKENQMFIRAKYEEKRWVSKNR 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARG 116
           T PAP+LGG RS+YCDS+E GP+ SISKKMRN+SLEEEILTKHV +ATPTV KARG
Sbjct: 128 THPAPQLGGARSVYCDSVEIGPRNSISKKMRNFSLEEEILTKHVTRATPTVAKARG 183

[Close]
BLAST of Cla008390 vs. NCBI nr
Match: gi|641829620|gb|KDO48734.1| (hypothetical protein CISIN_1g041407mg, partial [Citrus sinensis])

HSP 1 Score: 186.0 bits (471), Expect = 5.5e-44
Identity = 101/182 (55.49%), Postives = 122/182 (67.03%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDR-RGQMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQVAFMQSMGNE+SN +WEAELPPNFDR R + FIR KYEE++WV K  
Sbjct: 51  VRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGA 110

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKAT--PTVVKARGSS 120
           T P  K   + +     +E G K  I +K R  SLEEEILTKH+A+    PTV ++RG S
Sbjct: 111 TQPTTKAVQINNNVSKFLE-GLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGS 170

Query: 121 LDMKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFK--YVQDAKQDCSSVIPARWATFD 178
           LDM     A  PPR P  V E+   T N +GT DL+   YV + +Q+ +   P+RWATFD
Sbjct: 171 LDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFD 230

[Close]
BLAST of Cla008390 vs. NCBI nr
Match: gi|1009133590|ref|XP_015883982.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43
Identity = 99/183 (54.10%), Postives = 120/183 (65.57%), Query Frame = 1 

Query: 1   VRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRG-QMFIRAKYEEKRWVSKNR 60
           VRSTTLDTWLPEQV FM S GNE++N YWEA LPPN DR G + FI AKY EKRWVSK+ 
Sbjct: 68  VRSTTLDTWLPEQVTFMASTGNEKANRYWEARLPPNSDRNGIEKFIHAKYVEKRWVSKDE 127

Query: 61  TCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKA---TPTVVKARGS 120
           T P P+   M   +  +     + +  KK R+ SLEE IL+KH+  A    P V K+RG 
Sbjct: 128 TQPTPRSAEMSGNFMSA--RAMQRNFPKKTRSLSLEEAILSKHLGVAQVSPPPVAKSRGG 187

Query: 121 SLDMKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFK--YVQDAKQDCSSVIPARWATF 178
           S D+KN M  S P +GPS   E   ST+ T+GT DL+   YV DAK+D S+V P+ WATF
Sbjct: 188 SFDLKNSMFVSPPCKGPSMTTECLTSTRRTNGTKDLYNLIYVHDAKKDSSTVTPSSWATF 247

The following BLAST results are available for this feature:
BLAST of Cla008390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGD15_ARATH6.6e-2943.26Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis ... [more]
AGD5_ARATH4.6e-2241.45Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis t... [more]
SMAP1_MOUSE2.2e-0846.03Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1[more]
SMAP1_HUMAN1.9e-0744.44Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2[more]
YIQ9_SCHPO1.6e-0629.55Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
BLAST of Cla008390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQZ1_CUCSA1.0e-8185.23Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043060 PE=4 SV=1[more]
A0A067E0K8_CITSI3.9e-4455.49Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041407mg PE=4 S... [more]
M5WVB0_PRUPE1.4e-4151.12Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010611mg PE=4 SV=1[more]
F6HVT2_VITVI3.2e-3852.46Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0053g00430 PE=4 SV=... [more]
A0A068TQP2_COFCA9.5e-3549.44Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022721001 PE=4 SV=1[more]
BLAST of Cla008390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066941|ref|XP_008467216.1|1.0e-8588.07PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 isof... [more]
gi|778657482|ref|XP_004137634.2|1.5e-8185.23PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 [Cuc... [more]
gi|659066944|ref|XP_008467226.1|1.2e-5187.07PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 isof... [more]
gi|641829620|gb|KDO48734.1|5.5e-4455.49hypothetical protein CISIN_1g041407mg, partial [Citrus sinensis][more]
gi|1009133590|ref|XP_015883982.1|1.2e-4354.10PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15 isof... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001164ArfGAP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005096GTPase activator activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008390Cla008390.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001164Arf GTPase activating proteinPFAMPF01412ArfGapcoord: 1..57
score: 7.5
NoneNo IPR availablePANTHERPTHR23180CENTAURIN/ARFcoord: 1..167
score: 5.9
NoneNo IPR availablePANTHERPTHR23180:SF262ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATEDcoord: 1..167
score: 5.9
NoneNo IPR availableunknownSSF57863ArfGap/RecO-like zinc fingercoord: 1..57
score: 1.02